Homologs of PS417_26370 from Pseudomonas simiae WCS417

RNA helicase
SEED: ATP-dependent 23S rRNA helicase DbpA
KEGG: ATP-independent RNA helicase DbpA

Top 100 hits from BLASTp (E < 0.01)

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Orth	Species	Gene	Name	Description	Fitness	%Id	Cov
	Pseudomonas simiae WCS417	PS417_26370		RNA helicase	strong	100	100
o	Pseudomonas fluorescens SBW25	PFLU_RS28020		ATP-dependent RNA helicase DbpA	insig.	100	100
o	Pseudomonas fluorescens SBW25-INTG	PFLU_RS28020		ATP-dependent RNA helicase DbpA	strong	100	100
o	Pseudomonas lactucae CFBP13502	GEMAOFIL_05400		ATP-dependent RNA helicase DbpA	cofit	99	100
o	Pseudomonas fluorescens FW300-N2C3	AO356_13770		ATP-dependent RNA helicase	strong	94	100
o	Pseudomonas fluorescens FW300-N2E2	Pf6N2E2_4673		ATP-dependent 23S rRNA helicase DbpA	strong	94	100
o	Pseudomonas sp. RS175	PFR28_04172		ATP-dependent RNA helicase DbpA	sig.	93	100
o	Pseudomonas fluorescens FW300-N1B4	Pf1N1B4_2412		ATP-dependent 23S rRNA helicase DbpA	strong	93	100
o	Pseudomonas fluorescens GW456-L13	PfGW456L13_1078		ATP-dependent 23S rRNA helicase DbpA	insig.	92	100
o	Pseudomonas sp. DMC3	GFF142		ATP-dependent RNA helicase DbpA	insig.	92	100
o	Pseudomonas fluorescens FW300-N2E3	AO353_07850		ATP-dependent RNA helicase	strong	90	100
o	Pseudomonas syringae pv. syringae B728a	Psyr_0516		ATP-dependent RNA helicase DbpA	insig.	87	99
o	Pseudomonas syringae pv. syringae B728a ΔmexB	Psyr_0516		ATP-dependent RNA helicase DbpA	insig.	87	99
o	Pseudomonas putida KT2440	PP_4952		ATP-dependent RNA helicase, specific for 23S rRNA	insig.	82	100
o	Pseudomonas stutzeri RCH2	Psest_0344		Superfamily II DNA and RNA helicases	insig.	82	99
o	Pseudomonas sp. SVBP6	COO64_RS17620	dbpA	ATP-dependent RNA helicase DbpA	insig.	83	97
o	Pseudomonas sp. BP01	JOY50_RS09935	dbpA	ATP-dependent RNA helicase DbpA	insig.	83	97
o	Pseudomonas segetis P6	MPMX49_00675		ATP-dependent RNA helicase DbpA	insig.	83	97
o	Pseudomonas aeruginosa PA14	IKLFDK_23155		ATP-dependent RNA helicase DbpA	insig.	76	99
o	Pseudomonas sp. S08-1	OH686_14770		ATP-dependent 23S rRNA helicase DbpA	insig.	73	99
o	Hydrogenophaga sp. GW460-11-11-14-LB1	GFF5449		ATP-dependent 23S rRNA helicase DbpA	insig.	62	99
o	Ralstonia solanacearum GMI1000	RS_RS03120		ATP-dependent RNA helicase DbpA	insig.	60	99
o	Marinobacter adhaerens HP15	HP15_1329		DEAD/DEAH box helicase domain protein	sig.	59	98
o	Ralstonia solanacearum PSI07	RPSI07_RS20905		ATP-dependent RNA helicase DbpA	insig.	60	99
o	Paraburkholderia sabiae LMG 24235	QEN71_RS00065		ATP-dependent RNA helicase DbpA	cofit	60	97
o	Serratia liquefaciens MT49	IAI46_14765		ATP-dependent RNA helicase DbpA	insig.	58	100
o	Paraburkholderia graminis OAS925	ABIE53_000368		ATP-independent RNA helicase DbpA	insig.	59	97
o	Paraburkholderia bryophila 376MFSha3.1	H281DRAFT_02294		ATP-dependent RNA helicase DbpA	insig.	59	97
o	Ralstonia sp. UNC404CL21Col	ABZR87_RS19855		ATP-dependent RNA helicase DbpA	insig.	60	99
o	Cupriavidus basilensis FW507-4G11	RR42_RS00295		DEAD/DEAH box helicase	sig.	58	99
o	Variovorax sp. OAS795	ABID97_RS02340		ATP-dependent RNA helicase DbpA	insig.	59	98
o	Burkholderia phytofirmans PsJN	BPHYT_RS00150		DEAD/DEAH box helicase	insig.	59	97
o	Pectobacterium carotovorum WPP14	HER17_RS06775		ATP-dependent RNA helicase DbpA	insig.	58	99
o	Dechlorosoma suillum PS	Dsui_2946		DNA/RNA helicase, superfamily II	insig.	57	99
o	Acidovorax sp. GW101-3H11	Ac3H11_4671		ATP-dependent 23S rRNA helicase DbpA	insig.	58	100
o	Variovorax sp. SCN45	GFF7138		ATP-dependent 23S rRNA helicase DbpA	insig.	58	99
o	Rahnella sp. WP5	EX31_RS24740		ATP-dependent RNA helicase DbpA	insig.	58	99
o	Dyella japonica UNC79MFTsu3.2	ABZR86_RS05195		ATP-dependent RNA helicase DbpA	insig.	56	99
o	Shewanella amazonensis SB2B	Sama_0752		ATP-dependent RNA helicase DbpA (RefSeq)	insig.	55	99
o	Klebsiella michiganensis M5al	BWI76_RS12705		ATP-dependent RNA helicase	insig.	55	99
o	Shewanella sp. ANA-3	Shewana3_3384		ATP-dependent RNA helicase DbpA (RefSeq)	insig.	54	100
o	Dickeya dadantii 3937	DDA3937_RS11045		ATP-dependent RNA helicase DbpA	insig.	55	100
o	Shewanella oneidensis MR-1	SO0897	dbpA	ATP-dependent RNA helicase DbpA (NCBI ptt file)	insig.	55	99
o	Klebsiella pneumoniae MKP103	KDGMDA_20600		ATP-dependent RNA helicase DbpA	insig.	55	99
o	Dickeya dianthicola 67-19	HGI48_RS11065		ATP-dependent RNA helicase DbpA	insig.	55	100
o	Castellaniella sp019104865 MT123	ABCV34_RS04635		ATP-dependent RNA helicase DbpA	insig.	56	100
o	Enterobacter asburiae PDN3	EX28DRAFT_1006		Superfamily II DNA and RNA helicases	insig.	54	99
o	Dickeya dianthicola ME23	DZA65_RS11470		ATP-dependent RNA helicase DbpA	insig.	54	100
o	Escherichia coli Nissle 1917	ECOLIN_RS08060		ATP-dependent RNA helicase DbpA	insig.	55	99
o	Shewanella loihica PV-4	Shew_0598		ATP-dependent RNA helicase DbpA (RefSeq)	insig.	54	99
o	Rhodanobacter sp. FW510-T8	OKGIIK_16320	dbpA	ATP-dependent RNA helicase DbpA	insig.	54	99
o	Escherichia coli ECRC62	BNILDI_18025	dbpA	ATP-dependent RNA helicase DbpA	insig.	54	99
o	Escherichia coli ECOR27	NOLOHH_19875	dbpA	ATP-dependent RNA helicase DbpA	insig.	54	99
o	Escherichia fergusonii Becca	EFB2_02584		ATP-dependent RNA helicase DbpA	insig.	54	99
o	Escherichia coli ECOR38	HEPCGN_26000	dbpA	ATP-dependent RNA helicase DbpA	insig.	54	99
o	Enterobacter sp. TBS_079	MPMX20_02441		ATP-dependent RNA helicase DbpA	insig.	54	99
o	Rhodanobacter sp000427505 FW510-R12	LRK53_RS02835		ATP-dependent RNA helicase DbpA	insig.	55	98
o	Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868	GFF2649		ATP-dependent 23S rRNA helicase DbpA	insig.	54	100
o	Escherichia coli BL21	ECD_01320		ATP-dependent RNA helicase, specific for 23S rRNA	insig.	54	99
o	Escherichia coli HS(pFamp)R (ATCC 700891)	OHPLBJKB_02338		ATP-dependent RNA helicase DbpA	insig.	54	99
o	Escherichia coli BW25113	b1343	dbpA	ATP-dependent RNA helicase, specific for 23S rRNA (NCBI)	insig.	54	99
o	Escherichia coli ECRC100	OKFHMN_02160	dbpA	ATP-dependent RNA helicase DbpA	cofit	54	99
o	Escherichia coli ECRC101	MCAODC_16095	dbpA	ATP-dependent RNA helicase DbpA	insig.	54	99
o	Escherichia coli ECRC102	NIAGMN_26330	dbpA	ATP-dependent RNA helicase DbpA	insig.	54	99
o	Escherichia coli ECRC98	JDDGAC_04720	dbpA	ATP-dependent RNA helicase DbpA	insig.	54	99
o	Escherichia coli ECRC99	KEDOAH_26595	dbpA	ATP-dependent RNA helicase DbpA	no data	54	99
o	Rhodanobacter denitrificans MT42	LRK55_RS09695		ATP-dependent RNA helicase DbpA	insig.	54	99
o	Rhodanobacter denitrificans FW104-10B01	LRK54_RS10055		ATP-dependent RNA helicase DbpA	insig.	54	99
o	Vibrio cholerae E7946 ATCC 55056	CSW01_12980		ATP-dependent RNA helicase DbpA	insig.	54	99
o	Erwinia amylovora T8	OLJFJH_13775		ATP-dependent RNA helicase DbpA	insig.	54	99
o	Kangiella aquimarina DSM 16071	B158DRAFT_2047		ATP-dependent RNA helicase DbpA (EC 5.99.1.-)	insig.	53	98
o	Pantoea sp. MT58	IAI47_15055		ATP-dependent RNA helicase DbpA	insig.	54	99
o	Pantoea agglomerans CFBP13505 P0401	PagCFBP13505_RS10105		ATP-dependent RNA helicase DbpA	cofit	54	99
o	Xanthomonas campestris pv. campestris strain 8004	Xcc-8004.2274.1		ATP-dependent 23S rRNA helicase DbpA	sig.	54	98
o	Erwinia tracheiphila HP pepo 2.2	IJEDHG_24880	dbpA	ATP-dependent RNA helicase DbpA	cofit	54	99
o	Erwinia tracheiphila SCR3	LU632_RS11995	dbpA	ATP-dependent RNA helicase DbpA	insig.	54	99
o	Lysobacter sp. OAE881	ABIE51_RS14930		ATP-dependent RNA helicase DbpA	insig.	52	98
o	Alteromonas macleodii MIT1002	MIT1002_03748		ATP-independent RNA helicase DbpA	no data	47	98
o	Pontibacter actiniarum KMM 6156, DSM 19842	CA264_06050		ATP-dependent RNA helicase	insig.	43	98
	Desulfovibrio vulgaris Miyazaki F	DvMF_2125		DEAD/DEAH box helicase domain protein (RefSeq)	no data	42	79
	Echinicola vietnamensis KMM 6221, DSM 17526	Echvi_3056		Superfamily II DNA and RNA helicases	no data	42	79
	Desulfovibrio vulgaris Hildenborough JW710	DVU3310	deaD	ATP-dependent RNA helicase, DEAD/DEAH family (TIGR)	strong	44	79
	Pontibacter actiniarum KMM 6156, DSM 19842	CA264_05910		RNA helicase	strong	40	80
	Shewanella loihica PV-4	Shew_0531		DEAD/DEAH box helicase domain-containing protein (RefSeq)	strong	41	80
	Rhodanobacter sp000427505 FW510-R12	LRK53_RS07300		DEAD/DEAH box helicase	insig.	41	81
	Rhodanobacter denitrificans MT42	LRK55_RS02405		DEAD/DEAH box helicase	cofit	41	81
	Rhodanobacter denitrificans FW104-10B01	LRK54_RS02650		DEAD/DEAH box helicase	insig.	41	81
	Kangiella aquimarina DSM 16071	B158DRAFT_1850		ATP-dependent RNA helicase CsdA (EC 5.99.1.-)	insig.	40	80
	Dechlorosoma suillum PS	Dsui_1351		DNA/RNA helicase, superfamily II	strong	42	80
	Rhodanobacter sp. FW510-T8	OKGIIK_09705		ATP-dependent RNA helicase	cofit	40	81
	Shewanella oneidensis MR-1	SO4034	deaD	ATP-dependent RNA helicase DeaD (NCBI ptt file)	strong	42	79
	Methanococcus maripaludis JJ	MMJJ_RS02855		DEAD/DEAH box helicase	strong	39	79
	Methanococcus maripaludis S2	MMP_RS02420		DEAD/DEAH box helicase	no data	39	79
	Shewanella amazonensis SB2B	Sama_0512		ATP-dependent RNA helicase DeaD (RefSeq)	strong	41	79
	Dyella japonica UNC79MFTsu3.2	ABZR86_RS08990		DEAD/DEAH box helicase	strong	40	78
	Pseudomonas sp. S08-1	OH686_22545		DEAD-box ATP-dependent RNA helicase DeaD ( CshA)	cofit	41	81
	Xanthomonas campestris pv. campestris strain 8004	Xcc-8004.1841.1		DEAD-box ATP-dependent RNA helicase CshA (EC 3.6.4.13)	insig.	40	80
	Pseudomonas segetis P6	MPMX49_02165		ATP-dependent RNA helicase DeaD	insig.	41	81
	Pseudomonas stutzeri RCH2	Psest_1804		Superfamily II DNA and RNA helicases	strong	41	81
	Alteromonas macleodii MIT1002	MIT1002_00666		Cold-shock DEAD box protein A	strong	41	79