Homologs of GFF3820 from Sphingobium sp. HT1-2

RNase adapter protein RapZ
SEED: ATP-binding protein ManX
KEGG: UPF0042 nucleotide-binding protein

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Sphingobium sp. HT1-2 GFF3820 RNase adapter protein RapZ cofit 100 100
o Sphingomonas koreensis DSMZ 15582 Ga0059261_0917 Predicted P-loop-containing kinase strong 68 96
o Rhodospirillum rubrum S1H Rru_A3448 Uncharacterized P-loop ATPase protein UPF0042 (NCBI) strong 46 93
o Azospirillum brasilense Sp245 AZOBR_RS30485 nucleotide-binding protein sig. 47 91
o Magnetospirillum magneticum AMB-1 AMB_RS22235 RNase adaptor protein RapZ cofit 47 91
o Azospirillum sp. SherDot2 MPMX19_02622 Nucleotide-binding protein insig. 46 91
o Dinoroseobacter shibae DFL-12 Dshi_0209 hypothetical protein (RefSeq) insig. 46 94
o Phaeobacter inhibens DSM 17395 PGA1_c01180 Predicted P-loop-containing kinase insig. 44 93
o Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.1658.1 hypothetical protein strong 43 93
o Shewanella sp. ANA-3 Shewana3_0669 hypothetical protein (RefSeq) insig. 38 92
o Shewanella oneidensis MR-1 SO3964 conserved hypothetical protein (NCBI ptt file) strong 38 92
o Paraburkholderia sabiae LMG 24235 QEN71_RS01735 RNase adapter RapZ sig. 42 93
o Lysobacter sp. OAE881 ABIE51_RS15975 RNase adapter RapZ strong 38 94
o Vibrio cholerae E7946 ATCC 55056 CSW01_12830 RNase adaptor protein RapZ insig. 36 91
o Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_01931 UPF0042 nucleotide-binding protein sig. 41 93
o Erwinia amylovora T8 OLJFJH_07055 RNase adapter RapZ strong 37 96
o Paraburkholderia graminis OAS925 ABIE53_000714 UPF0042 nucleotide-binding protein strong 42 85
o Burkholderia phytofirmans PsJN BPHYT_RS02885 glmZ(sRNA)-inactivating NTPase strong 40 91
o Pseudomonas fluorescens SBW25 PFLU_RS04385 RNase adapter RapZ strong 38 91
o Pseudomonas fluorescens SBW25-INTG PFLU_RS04385 RNase adapter RapZ strong 38 91
o Pseudomonas simiae WCS417 PS417_04330 glmZ(sRNA)-inactivating NTPase no data 38 91
o Mycobacterium tuberculosis H37Rv Rv1421 Conserved protein strong 38 93
o Rahnella sp. WP5 EX31_RS12385 RNase adapter RapZ sig. 38 92
o Serratia liquefaciens MT49 IAI46_22485 RNase adapter RapZ insig. 37 93
o Dickeya dadantii 3937 DDA3937_RS01515 RNase adapter RapZ strong 38 92
o Dickeya dianthicola 67-19 HGI48_RS01430 RNase adapter RapZ insig. 38 92
o Dickeya dianthicola ME23 DZA65_RS01495 RNase adapter RapZ sig. 38 92
o Kangiella aquimarina DSM 16071 B158DRAFT_2077 Predicted P-loop-containing kinase strong 35 91
o Klebsiella michiganensis M5al BWI76_RS25280 RNase adaptor protein RapZ sig. 37 92
o Pseudomonas lactucae CFBP13502 GEMAOFIL_01072 RNase adapter protein RapZ cofit 38 91
o Pseudomonas aeruginosa PA14 IKLFDK_01755 RNase adapter RapZ insig. 37 92
o Escherichia coli BL21 ECD_03070 adaptor protein for GlmZ/GlmY sRNA decay, glucosamine-6-phosphate-regulated; NTPase strong 37 96
o Escherichia fergusonii Becca EFB2_00618 RNase adapter protein RapZ strong 37 96
o Escherichia coli ECOR27 NOLOHH_09725 rapZ RNase adapter RapZ strong 37 96
o Escherichia coli ECOR38 HEPCGN_16800 rapZ RNase adapter RapZ strong 37 96
o Escherichia coli ECRC100 OKFHMN_17925 rapZ RNase adapter RapZ strong 37 96
o Escherichia coli ECRC101 MCAODC_08445 rapZ RNase adapter RapZ strong 37 96
o Escherichia coli ECRC102 NIAGMN_15685 rapZ RNase adapter RapZ strong 37 96
o Escherichia coli ECRC62 BNILDI_01810 rapZ RNase adapter RapZ cofit 37 96
o Escherichia coli ECRC98 JDDGAC_21550 rapZ RNase adapter RapZ strong 37 96
o Escherichia coli ECRC99 KEDOAH_10225 rapZ RNase adapter RapZ no data 37 96
o Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_00495 RNase adapter protein RapZ sig. 37 96
o Escherichia coli Nissle 1917 ECOLIN_RS18440 RNase adapter RapZ strong 37 96
o Escherichia coli BW25113 b3205 yhbJ hypothetical protein (NCBI) strong 37 96
o Klebsiella pneumoniae MKP103 KDGMDA_06095 RNase adapter RapZ strong 37 92
o Pantoea sp. MT58 IAI47_17200 RNase adapter RapZ strong 37 92
o Pseudomonas fluorescens GW456-L13 PfGW456L13_5017 Hypothetical ATP-binding protein UPF0042, contains P-loop strong 38 91
o Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_1083 Hypothetical ATP-binding protein UPF0042, contains P-loop no data 37 91
o Pectobacterium carotovorum WPP14 HER17_RS20075 RNase adapter RapZ strong 37 96
o Enterobacter asburiae PDN3 EX28DRAFT_3259 Predicted P-loop-containing kinase sig. 37 92
o Erwinia tracheiphila HP pepo 2.2 IJEDHG_13725 rapZ RNase adapter RapZ strong 37 92
o Erwinia tracheiphila SCR3 LU632_RS21295 rapZ RNase adapter RapZ sig. 37 92
o Pantoea agglomerans CFBP13505 P0401 PagCFBP13505_RS09365 RNase adapter RapZ cofit 37 92
o Shewanella amazonensis SB2B Sama_3091 hypothetical protein (RefSeq) strong 36 92
o Pseudomonas fluorescens FW300-N2E3 AO353_05195 glmZ(sRNA)-inactivating NTPase strong 37 91
o Enterobacter sp. TBS_079 MPMX20_04111 RNase adapter protein RapZ strong 37 92
o Marinobacter adhaerens HP15 HP15_2445 protein yhbJ strong 35 91
o Bifidobacterium breve UCC2003 BBR_RS15525 RNase adapter RapZ strong 39 90
o Pseudomonas fluorescens FW300-N2C3 AO356_07050 glmZ(sRNA)-inactivating NTPase strong 37 91
o Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_3270 Hypothetical ATP-binding protein UPF0042, contains P-loop strong 37 91
o Pseudomonas sp. DMC3 GFF1825 RNase adapter protein RapZ cofit 38 91
o Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF2949 Hypothetical ATP-binding protein UPF0042, contains P-loop cofit 37 92
o Desulfovibrio vulgaris Hildenborough JW710 DVU1631 conserved hypothetical protein (TIGR) strong 38 91
o Pseudomonas sp. S08-1 OH686_08560 RNase adapter protein RapZ strong 38 91
o Pseudomonas putida KT2440 PP_0949 putative ATP-binding protein UPF0042 strong 37 91
o Dyella japonica UNC79MFTsu3.2 ABZR86_RS19800 RNase adapter RapZ strong 38 91
o Pseudomonas sp. SVBP6 COO64_RS04270 rapZ RNase adapter RapZ insig. 37 91
o Rhodanobacter sp000427505 FW510-R12 LRK53_RS15720 RNase adapter RapZ sig. 36 94
o Alteromonas macleodii MIT1002 MIT1002_00824 glmZ(sRNA)-inactivating NTPase insig. 35 91
o Shewanella loihica PV-4 Shew_3314 hypothetical protein (RefSeq) no data 35 91
o Castellaniella sp019104865 MT123 ABCV34_RS14330 RNase adapter RapZ sig. 40 91
o Rhodanobacter denitrificans MT42 LRK55_RS12560 RNase adapter RapZ strong 36 94
o Rhodanobacter denitrificans FW104-10B01 LRK54_RS12860 RNase adapter RapZ strong 36 94
o Pseudomonas syringae pv. syringae B728a Psyr_4150 Uncharacterized P-loop ATPase protein UPF0042 sig. 38 91
o Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_4150 Uncharacterized P-loop ATPase protein UPF0042 sig. 38 91
o Pseudomonas sp. RS175 PFR28_00170 RNase adapter protein RapZ strong 37 91
o Pseudomonas sp. BP01 JOY50_RS11115 rapZ RNase adapter RapZ insig. 37 91
o Rhodanobacter sp. FW510-T8 OKGIIK_02250 rapZ RNase adapter RapZ strong 36 91
o Fusobacterium nucleatum SB010 HUW76_06700 RNase adapter RapZ strong 36 92
o Desulfovibrio vulgaris Miyazaki F DvMF_0424 hypothetical protein (RefSeq) strong 37 91
o Pseudomonas segetis P6 MPMX49_03861 RNase adapter protein RapZ strong 36 91
o Ralstonia solanacearum IBSBF1503 RALBFv3_RS11145 RNase adapter RapZ strong 37 91
o Ralstonia solanacearum UW163 UW163_RS02435 RNase adapter RapZ strong 37 91
o Ralstonia solanacearum PSI07 RPSI07_RS22155 RNase adapter RapZ sig. 39 91
o Ralstonia solanacearum GMI1000 RS_RS01995 RNase adaptor protein RapZ strong 38 91
o Ralstonia sp. UNC404CL21Col ABZR87_RS07035 RNase adapter RapZ strong 38 91
o Acinetobacter baumannii LAC-4 RR41_RS16040 RNase adapter RapZ strong 36 92
o Pseudomonas stutzeri RCH2 Psest_3316 Predicted P-loop-containing kinase strong 37 91
o Acinetobacter radioresistens SK82 MPMX26_00547 RNase adapter protein RapZ strong 36 92
o Methylophilus sp. DMC18 GFF2266 RNase adapter protein RapZ cofit 35 92
o Hydrogenophaga sp. GW460-11-11-14-LB1 GFF828 Hypothetical ATP-binding protein UPF0042, contains P-loop strong 36 94
o Variovorax sp. OAS795 ABID97_RS23710 RNase adapter RapZ strong 38 86
o Acidovorax sp. GW101-3H11 Ac3H11_3459 Hypothetical ATP-binding protein UPF0042, contains P-loop strong 36 87
o Herbaspirillum seropedicae SmR1 HSERO_RS19535 nucleotide-binding protein strong 37 87
o Cupriavidus basilensis FW507-4G11 RR42_RS02060 nucleotide-binding protein strong 34 91
o Dechlorosoma suillum PS Dsui_0990 putative P-loop-containing kinase insig. 35 93
o Variovorax sp. SCN45 GFF2356 RNase adapter protein RapZ cofit 36 92
  Bacteroides stercoris CC31F HMPREF1181_RS10545 phosphotransferase insig. 36 38
  Bacteroides ovatus ATCC 8483 BACOVA_04370 phosphotransferase enzyme family insig. 35 38
  Bacteroides thetaiotaomicron VPI-5482 BT1634 conserved hypothetical protein (NCBI ptt file) insig. 35 38