Homologs of GFF1987 from Variovorax sp. SCN45

Pseudouridine synthase (EC 4.2.1.70), PA2043 type
SEED: Similar to ribosomal large subunit pseudouridine synthase A

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Variovorax sp. SCN45 GFF1987 Pseudouridine synthase (EC 4.2.1.70), PA2043 type insig. 100 100
o Variovorax sp. OAS795 ABID97_RS25165 pseudouridine synthase insig. 84 98
o Acidovorax sp. GW101-3H11 Ac3H11_4190 Similar to ribosomal large subunit pseudouridine synthase A insig. 53 96
o Hydrogenophaga sp. GW460-11-11-14-LB1 GFF5185 Similar to ribosomal large subunit pseudouridine synthase A insig. 51 93
o Lysobacter sp. OAE881 ABIE51_RS09995 pseudouridine synthase insig. 49 96
o Pseudomonas fluorescens SBW25 PFLU_RS08610 pseudouridine synthase cofit 50 91
o Pseudomonas fluorescens SBW25-INTG PFLU_RS08610 pseudouridine synthase strong 50 91
o Herbaspirillum seropedicae SmR1 HSERO_RS13490 pseudouridine synthase insig. 48 95
o Pseudomonas syringae pv. syringae B728a Psyr_2133 Pseudouridine synthase insig. 50 92
o Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_2133 Pseudouridine synthase insig. 50 92
o Pseudomonas sp. S08-1 OH686_18350 Pseudouridine synthase , type insig. 51 92
o Pseudomonas lactucae CFBP13502 GEMAOFIL_01863 hypothetical protein cofit 50 92
o Pseudomonas aeruginosa MRSN321 DY961_RS16400 RluA family pseudouridine synthase sig. 51 91
o Pseudomonas aeruginosa PA14 IKLFDK_09995 pseudouridine synthase sig. 51 91
o Pseudomonas aeruginosa PUPa3 DQ20_RS38725 RluA family pseudouridine synthase sig. 51 91
o Pseudomonas fluorescens FW300-N2C3 AO356_03000 pseudouridine synthase insig. 50 92
o Rhodanobacter denitrificans MT42 LRK55_RS15670 RluA family pseudouridine synthase insig. 50 91
o Pseudomonas simiae WCS417 PS417_08655 pseudouridine synthase insig. 50 91
o Rhodanobacter denitrificans FW104-10B01 LRK54_RS15915 RluA family pseudouridine synthase insig. 50 91
o Pseudomonas fluorescens GW456-L13 PfGW456L13_2270 Similar to ribosomal large subunit pseudouridine synthase A insig. 50 92
o Pseudomonas orientalis W4I3 QF045_RS11365 pseudouridine synthase insig. 49 92
o Pseudomonas stutzeri RCH2 Psest_3527 Pseudouridylate synthases, 23S RNA-specific insig. 48 91
o Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_2426 Similar to ribosomal large subunit pseudouridine synthase A sig. 50 91
o Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.5337.1 Similar to ribosomal large subunit pseudouridine synthase A insig. 49 95
o Pseudomonas sp. RS175 PFR28_01002 hypothetical protein sig. 50 91
o Pseudomonas sp. BP01 JOY50_RS22025 pseudouridine synthase insig. 50 91
o Pseudomonas sp. DMC3 GFF4577 hypothetical protein insig. 49 92
o Pseudomonas fluorescens FW300-N2E3 AO353_19240 pseudouridine synthase sig. 49 92
o Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_239 Similar to ribosomal large subunit pseudouridine synthase A insig. 48 92
o Pseudomonas segetis P6 ACVTMO_RS18770 pseudouridine synthase insig. 46 92
o Pseudomonas sp. SVBP6 COO64_RS05220 pseudouridine synthase insig. 49 91
o Rhodanobacter sp. FW510-T8 OKGIIK_09070 Pseudouridine synthase insig. 51 93
o Pseudomonas putida KT2440 PP_2110 putative ribosomal large subunit pseudouridine synthase insig. 50 91
o Acinetobacter radioresistens SK82 MPMX26_01205 hypothetical protein strong 43 95
o Acinetobacter baumannii LAC-4 RR41_RS07060 pseudouridylate synthase insig. 42 95
o Shewanella amazonensis SB2B Sama_0506 pseudouridine synthase (RefSeq) insig. 42 90
o Shewanella sp. ANA-3 Shewana3_3712 pseudouridine synthase (RefSeq) cofit 40 91
o Kangiella aquimarina DSM 16071 B158DRAFT_1363 Pseudouridylate synthases, 23S RNA-specific insig. 38 91
o Mycobacterium tuberculosis H37Rv Rv3300c Conserved hypothetical protein insig. 46 75
o Shewanella loihica PV-4 Shew_3348 pseudouridine synthase (RefSeq) insig. 33 87
  Bifidobacterium breve UCC2003 BBR_RS13075 23S rRNA pseudouridylate synthase insig. 35 66
  Acinetobacter baumannii LAC-4 RR41_RS05195 RluA family pseudouridine synthase insig. 35 68
  Alteromonas macleodii MIT1002 MIT1002_01725 Ribosomal large subunit pseudouridine synthase C insig. 34 68
  Synechocystis sp000284455 PCC 6803 SGL_RS04000 RluA family pseudouridine synthase insig. 27 93
  Marinobacter adhaerens HP15 HP15_2221 pseudouridine synthase, RluA family sig. 32 70
  Sphingomonas koreensis DSMZ 15582 Ga0059261_3705 Pseudouridylate synthases, 23S RNA-specific insig. 32 56
  Vibrio cholerae E7946 ATCC 55056 CSW01_14535 RluA family pseudouridine synthase insig. 32 64
  Acinetobacter radioresistens SK82 MPMX26_01026 Dual-specificity RNA pseudouridine synthase RluA cofit 33 67
  Desulfovibrio vulgaris Hildenborough JW710 DVU1024 rluD/coaE ribosomal large subunit pseudouridine synthase D/dephospho-CoA kinase (TIGR) insig. 32 67
  Pseudomonas sp. SVBP6 COO64_RS06925 RluA family pseudouridine synthase insig. 30 67
  Sphingobium sp. HT1-2 GFF1481 RNA pseudouridylate synthase cofit 32 56
  Rhodanobacter sp000427505 FW510-R12 LRK53_RS05045 23S rRNA pseudouridine(1911/1915/1917) synthase RluD insig. 31 73
  Pontibacter actiniarum KMM 6156, DSM 19842 CA264_19675 RNA pseudouridine synthase strong 33 56
  Variovorax sp. SCN45 GFF7036 LSU rRNA pseudouridine(746) synthase (EC 5.4.99.29) @ tRNA pseudouridine(32) synthase (EC 5.4.99.28) insig. 33 65
  Rhodanobacter sp. FW510-T8 OKGIIK_01790 rluD 23S rRNA pseudouridine(1911/1915/1917) synthase RluD strong 29 87
  Shewanella loihica PV-4 Shew_2529 pseudouridine synthase (RefSeq) insig. 32 66
  Enterobacter sp. TBS_079 MPMX20_01766 Ribosomal large subunit pseudouridine synthase C sig. 33 67
  Rhodanobacter denitrificans MT42 LRK55_RS04745 23S rRNA pseudouridine(1911/1915/1917) synthase RluD strong 30 73
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS04965 23S rRNA pseudouridine(1911/1915/1917) synthase RluD strong 30 73
  Acinetobacter baumannii LAC-4 RR41_RS16980 RluA family pseudouridine synthase sig. 36 55
  Escherichia coli BL21 ECD_01082 23S rRNA pseudouridine(955,2504,2580) synthase strong 33 67
  Escherichia fergusonii Becca EFB2_02889 Ribosomal large subunit pseudouridine synthase C insig. 33 67
  Escherichia coli ECOR27 NOLOHH_21145 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC strong 33 67
  Escherichia coli ECOR38 HEPCGN_23865 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC strong 33 67
  Escherichia coli ECRC100 OKFHMN_03615 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC strong 33 67
  Escherichia coli ECRC101 MCAODC_22975 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC strong 33 67
  Escherichia coli ECRC102 NIAGMN_24215 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC insig. 33 67
  Escherichia coli ECRC62 BNILDI_19305 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC insig. 33 67
  Escherichia coli ECRC98 JDDGAC_07275 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC insig. 33 67
  Escherichia coli ECRC99 KEDOAH_24140 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC no data 33 67
  Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_02580 Ribosomal large subunit pseudouridine synthase C strong 33 67
  Escherichia coli BW25113 b1086 rluC 23S rRNA pseudouridylate synthase (NCBI) strong 33 67
  Dyella japonica UNC79MFTsu3.2 ABZR86_RS10965 23S rRNA pseudouridine(1911/1915/1917) synthase RluD strong 31 71
  Escherichia coli Nissle 1917 ECOLIN_RS06280 23S rRNA pseudouridine(955/2504/2580) synthase RluC strong 33 67
  Agrobacterium fabrum C58 Atu4041 ribosomal large subunit pseudouridine synthase A sig. 35 54
  Vibrio cholerae E7946 ATCC 55056 CSW01_10130 23S rRNA pseudouridine(955/2504/2580) synthase RluC insig. 33 68
  Bacteroides ovatus ATCC 8483 BACOVA_05306 pseudouridine synthase, RluA family insig. 32 68
  Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF3366 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) cofit 32 68
  Shewanella amazonensis SB2B Sama_0606 pseudouridylate synthase (RefSeq) sig. 31 66
  Sphingobium sp. HT1-2 GFF4062 LSU rRNA pseudouridine(1911/1915/1917) synthase (EC 5.4.99.23) cofit 31 69
  Pseudomonas putida KT2440 PP_1731 23S rRNA (746) and tRNA (32) pseudouridine synthase sig. 29 67
  Pseudomonas sp. BP01 JOY50_RS16355 RluA family pseudouridine synthase insig. 29 67
  Acinetobacter radioresistens SK82 MPMX26_00317 Ribosomal large subunit pseudouridine synthase C insig. 33 55
  Enterobacter asburiae PDN3 EX28DRAFT_1844 pseudouridine synthase, RluA family insig. 33 67
  Shewanella sp. ANA-3 Shewana3_2566 ribosomal large subunit pseudouridine synthase C (RefSeq) sig. 32 68
  Lysobacter sp. OAE881 ABIE51_RS04885 23S rRNA pseudouridine(1911/1915/1917) synthase RluD cofit 30 86
  Pseudomonas sp. RS175 PFR28_03154 Dual-specificity RNA pseudouridine synthase RluA insig. 29 67
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_0048 Pseudouridylate synthases, 23S RNA-specific strong 30 56
  Rahnella sp. WP5 EX31_RS03750 bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA insig. 34 64
  Acinetobacter radioresistens SK82 MPMX26_02477 Dual-specificity RNA pseudouridine synthase RluA insig. 31 64
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS13190 RluA family pseudouridine synthase insig. 29 69
  Acinetobacter baumannii LAC-4 RR41_RS18405 RluA family pseudouridine synthase insig. 34 68
  Pantoea sp. MT58 IAI47_07280 RluA family pseudouridine synthase insig. 29 67
  Pseudomonas fluorescens FW300-N2E3 AO353_02385 pseudouridine synthase no data 29 67
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_5794 Ribosomal large subunit pseudouridine synthase A (EC 4.2.1.70) strong 29 67
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS14415 pseudouridine synthase strong 31 67
  Dechlorosoma suillum PS Dsui_3205 pseudouridine synthase, RluA family insig. 33 67
  Azospirillum sp. SherDot2 MPMX19_05341 hypothetical protein insig. 32 63
  Shewanella loihica PV-4 Shew_1594 RluA family pseudouridine synthase (RefSeq) sig. 31 69
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_3753 Ribosomal large subunit pseudouridine synthase A (EC 4.2.1.70) sig. 29 67