| Orth | Species | Gene | Name | Description | Fitness | %Id | Cov |
| | Variovorax sp. SCN45 | GFF1987 | | Pseudouridine synthase (EC 4.2.1.70), PA2043 type | insig. | 100 | 100 |
| o | Variovorax sp. OAS795 | ABID97_RS25165 | | pseudouridine synthase | insig. | 84 | 98 |
| o | Acidovorax sp. GW101-3H11 | Ac3H11_4190 | | Similar to ribosomal large subunit pseudouridine synthase A | insig. | 53 | 96 |
| o | Hydrogenophaga sp. GW460-11-11-14-LB1 | GFF5185 | | Similar to ribosomal large subunit pseudouridine synthase A | insig. | 51 | 93 |
| o | Lysobacter sp. OAE881 | ABIE51_RS09995 | | pseudouridine synthase | insig. | 49 | 96 |
| o | Pseudomonas fluorescens SBW25 | PFLU_RS08610 | | pseudouridine synthase | cofit | 50 | 91 |
| o | Pseudomonas fluorescens SBW25-INTG | PFLU_RS08610 | | pseudouridine synthase | strong | 50 | 91 |
| o | Herbaspirillum seropedicae SmR1 | HSERO_RS13490 | | pseudouridine synthase | insig. | 48 | 95 |
| o | Pseudomonas syringae pv. syringae B728a | Psyr_2133 | | Pseudouridine synthase | insig. | 50 | 92 |
| o | Pseudomonas syringae pv. syringae B728a ΔmexB | Psyr_2133 | | Pseudouridine synthase | insig. | 50 | 92 |
| o | Pseudomonas sp. S08-1 | OH686_18350 | | Pseudouridine synthase , type | insig. | 51 | 92 |
| o | Pseudomonas lactucae CFBP13502 | GEMAOFIL_01863 | | hypothetical protein | cofit | 50 | 92 |
| o | Pseudomonas aeruginosa MRSN321 | DY961_RS16400 | | RluA family pseudouridine synthase | sig. | 51 | 91 |
| o | Pseudomonas aeruginosa PA14 | IKLFDK_09995 | | pseudouridine synthase | sig. | 51 | 91 |
| o | Pseudomonas aeruginosa PUPa3 | DQ20_RS38725 | | RluA family pseudouridine synthase | sig. | 51 | 91 |
| o | Pseudomonas fluorescens FW300-N2C3 | AO356_03000 | | pseudouridine synthase | insig. | 50 | 92 |
| o | Rhodanobacter denitrificans MT42 | LRK55_RS15670 | | RluA family pseudouridine synthase | insig. | 50 | 91 |
| o | Pseudomonas simiae WCS417 | PS417_08655 | | pseudouridine synthase | insig. | 50 | 91 |
| o | Rhodanobacter denitrificans FW104-10B01 | LRK54_RS15915 | | RluA family pseudouridine synthase | insig. | 50 | 91 |
| o | Pseudomonas fluorescens GW456-L13 | PfGW456L13_2270 | | Similar to ribosomal large subunit pseudouridine synthase A | insig. | 50 | 92 |
| o | Pseudomonas orientalis W4I3 | QF045_RS11365 | | pseudouridine synthase | insig. | 49 | 92 |
| o | Pseudomonas stutzeri RCH2 | Psest_3527 | | Pseudouridylate synthases, 23S RNA-specific | insig. | 48 | 91 |
| o | Pseudomonas fluorescens FW300-N2E2 | Pf6N2E2_2426 | | Similar to ribosomal large subunit pseudouridine synthase A | sig. | 50 | 91 |
| o | Xanthomonas campestris pv. campestris strain 8004 | Xcc-8004.5337.1 | | Similar to ribosomal large subunit pseudouridine synthase A | insig. | 49 | 95 |
| o | Pseudomonas sp. RS175 | PFR28_01002 | | hypothetical protein | sig. | 50 | 91 |
| o | Pseudomonas sp. BP01 | JOY50_RS22025 | | pseudouridine synthase | insig. | 50 | 91 |
| o | Pseudomonas sp. DMC3 | GFF4577 | | hypothetical protein | insig. | 49 | 92 |
| o | Pseudomonas fluorescens FW300-N2E3 | AO353_19240 | | pseudouridine synthase | sig. | 49 | 92 |
| o | Pseudomonas fluorescens FW300-N1B4 | Pf1N1B4_239 | | Similar to ribosomal large subunit pseudouridine synthase A | insig. | 48 | 92 |
| o | Pseudomonas segetis P6 | ACVTMO_RS18770 | | pseudouridine synthase | insig. | 46 | 92 |
| o | Pseudomonas sp. SVBP6 | COO64_RS05220 | | pseudouridine synthase | insig. | 49 | 91 |
| o | Rhodanobacter sp. FW510-T8 | OKGIIK_09070 | | Pseudouridine synthase | insig. | 51 | 93 |
| o | Pseudomonas putida KT2440 | PP_2110 | | putative ribosomal large subunit pseudouridine synthase | insig. | 50 | 91 |
| o | Acinetobacter radioresistens SK82 | MPMX26_01205 | | hypothetical protein | strong | 43 | 95 |
| o | Acinetobacter baumannii LAC-4 | RR41_RS07060 | | pseudouridylate synthase | insig. | 42 | 95 |
| o | Shewanella amazonensis SB2B | Sama_0506 | | pseudouridine synthase (RefSeq) | insig. | 42 | 90 |
| o | Shewanella sp. ANA-3 | Shewana3_3712 | | pseudouridine synthase (RefSeq) | cofit | 40 | 91 |
| o | Kangiella aquimarina DSM 16071 | B158DRAFT_1363 | | Pseudouridylate synthases, 23S RNA-specific | insig. | 38 | 91 |
| o | Mycobacterium tuberculosis H37Rv | Rv3300c | | Conserved hypothetical protein | insig. | 46 | 75 |
| o | Shewanella loihica PV-4 | Shew_3348 | | pseudouridine synthase (RefSeq) | insig. | 33 | 87 |
| | Bifidobacterium breve UCC2003 | BBR_RS13075 | | 23S rRNA pseudouridylate synthase | insig. | 35 | 66 |
| | Acinetobacter baumannii LAC-4 | RR41_RS05195 | | RluA family pseudouridine synthase | insig. | 35 | 68 |
| | Alteromonas macleodii MIT1002 | MIT1002_01725 | | Ribosomal large subunit pseudouridine synthase C | insig. | 34 | 68 |
| | Synechocystis sp000284455 PCC 6803 | SGL_RS04000 | | RluA family pseudouridine synthase | insig. | 27 | 93 |
| | Marinobacter adhaerens HP15 | HP15_2221 | | pseudouridine synthase, RluA family | sig. | 32 | 70 |
| | Sphingomonas koreensis DSMZ 15582 | Ga0059261_3705 | | Pseudouridylate synthases, 23S RNA-specific | insig. | 32 | 56 |
| | Vibrio cholerae E7946 ATCC 55056 | CSW01_14535 | | RluA family pseudouridine synthase | insig. | 32 | 64 |
| | Acinetobacter radioresistens SK82 | MPMX26_01026 | | Dual-specificity RNA pseudouridine synthase RluA | cofit | 33 | 67 |
| | Desulfovibrio vulgaris Hildenborough JW710 | DVU1024 | rluD/coaE | ribosomal large subunit pseudouridine synthase D/dephospho-CoA kinase (TIGR) | insig. | 32 | 67 |
| | Pseudomonas sp. SVBP6 | COO64_RS06925 | | RluA family pseudouridine synthase | insig. | 30 | 67 |
| | Sphingobium sp. HT1-2 | GFF1481 | | RNA pseudouridylate synthase | cofit | 32 | 56 |
| | Rhodanobacter sp000427505 FW510-R12 | LRK53_RS05045 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | insig. | 31 | 73 |
| | Pontibacter actiniarum KMM 6156, DSM 19842 | CA264_19675 | | RNA pseudouridine synthase | strong | 33 | 56 |
| | Variovorax sp. SCN45 | GFF7036 | | LSU rRNA pseudouridine(746) synthase (EC 5.4.99.29) @ tRNA pseudouridine(32) synthase (EC 5.4.99.28) | insig. | 33 | 65 |
| | Rhodanobacter sp. FW510-T8 | OKGIIK_01790 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | strong | 29 | 87 |
| | Shewanella loihica PV-4 | Shew_2529 | | pseudouridine synthase (RefSeq) | insig. | 32 | 66 |
| | Enterobacter sp. TBS_079 | MPMX20_01766 | | Ribosomal large subunit pseudouridine synthase C | sig. | 33 | 67 |
| | Rhodanobacter denitrificans MT42 | LRK55_RS04745 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | strong | 30 | 73 |
| | Rhodanobacter denitrificans FW104-10B01 | LRK54_RS04965 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | strong | 30 | 73 |
| | Acinetobacter baumannii LAC-4 | RR41_RS16980 | | RluA family pseudouridine synthase | sig. | 36 | 55 |
| | Escherichia coli BL21 | ECD_01082 | | 23S rRNA pseudouridine(955,2504,2580) synthase | strong | 33 | 67 |
| | Escherichia fergusonii Becca | EFB2_02889 | | Ribosomal large subunit pseudouridine synthase C | insig. | 33 | 67 |
| | Escherichia coli ECOR27 | NOLOHH_21145 | rluC | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | strong | 33 | 67 |
| | Escherichia coli ECOR38 | HEPCGN_23865 | rluC | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | strong | 33 | 67 |
| | Escherichia coli ECRC100 | OKFHMN_03615 | rluC | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | strong | 33 | 67 |
| | Escherichia coli ECRC101 | MCAODC_22975 | rluC | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | strong | 33 | 67 |
| | Escherichia coli ECRC102 | NIAGMN_24215 | rluC | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | insig. | 33 | 67 |
| | Escherichia coli ECRC62 | BNILDI_19305 | rluC | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | insig. | 33 | 67 |
| | Escherichia coli ECRC98 | JDDGAC_07275 | rluC | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | insig. | 33 | 67 |
| | Escherichia coli ECRC99 | KEDOAH_24140 | rluC | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | no data | 33 | 67 |
| | Escherichia coli HS(pFamp)R (ATCC 700891) | OHPLBJKB_02580 | | Ribosomal large subunit pseudouridine synthase C | strong | 33 | 67 |
| | Escherichia coli BW25113 | b1086 | rluC | 23S rRNA pseudouridylate synthase (NCBI) | strong | 33 | 67 |
| | Dyella japonica UNC79MFTsu3.2 | ABZR86_RS10965 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | strong | 31 | 71 |
| | Escherichia coli Nissle 1917 | ECOLIN_RS06280 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | strong | 33 | 67 |
| | Agrobacterium fabrum C58 | Atu4041 | | ribosomal large subunit pseudouridine synthase A | sig. | 35 | 54 |
| | Vibrio cholerae E7946 ATCC 55056 | CSW01_10130 | | 23S rRNA pseudouridine(955/2504/2580) synthase RluC | insig. | 33 | 68 |
| | Bacteroides ovatus ATCC 8483 | BACOVA_05306 | | pseudouridine synthase, RluA family | insig. | 32 | 68 |
| | Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | GFF3366 | | Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) | cofit | 32 | 68 |
| | Shewanella amazonensis SB2B | Sama_0606 | | pseudouridylate synthase (RefSeq) | sig. | 31 | 66 |
| | Sphingobium sp. HT1-2 | GFF4062 | | LSU rRNA pseudouridine(1911/1915/1917) synthase (EC 5.4.99.23) | cofit | 31 | 69 |
| | Pseudomonas putida KT2440 | PP_1731 | | 23S rRNA (746) and tRNA (32) pseudouridine synthase | sig. | 29 | 67 |
| | Pseudomonas sp. BP01 | JOY50_RS16355 | | RluA family pseudouridine synthase | insig. | 29 | 67 |
| | Acinetobacter radioresistens SK82 | MPMX26_00317 | | Ribosomal large subunit pseudouridine synthase C | insig. | 33 | 55 |
| | Enterobacter asburiae PDN3 | EX28DRAFT_1844 | | pseudouridine synthase, RluA family | insig. | 33 | 67 |
| | Shewanella sp. ANA-3 | Shewana3_2566 | | ribosomal large subunit pseudouridine synthase C (RefSeq) | sig. | 32 | 68 |
| | Lysobacter sp. OAE881 | ABIE51_RS04885 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | cofit | 30 | 86 |
| | Pseudomonas sp. RS175 | PFR28_03154 | | Dual-specificity RNA pseudouridine synthase RluA | insig. | 29 | 67 |
| | Echinicola vietnamensis KMM 6221, DSM 17526 | Echvi_0048 | | Pseudouridylate synthases, 23S RNA-specific | strong | 30 | 56 |
| | Rahnella sp. WP5 | EX31_RS03750 | | bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA | insig. | 34 | 64 |
| | Acinetobacter radioresistens SK82 | MPMX26_02477 | | Dual-specificity RNA pseudouridine synthase RluA | insig. | 31 | 64 |
| | Parabacteroides merdae CL09T00C40 | HMPREF1078_RS13190 | | RluA family pseudouridine synthase | insig. | 29 | 69 |
| | Acinetobacter baumannii LAC-4 | RR41_RS18405 | | RluA family pseudouridine synthase | insig. | 34 | 68 |
| | Pantoea sp. MT58 | IAI47_07280 | | RluA family pseudouridine synthase | insig. | 29 | 67 |
| | Pseudomonas fluorescens FW300-N2E3 | AO353_02385 | | pseudouridine synthase | no data | 29 | 67 |
| | Pseudomonas fluorescens FW300-N2E2 | Pf6N2E2_5794 | | Ribosomal large subunit pseudouridine synthase A (EC 4.2.1.70) | strong | 29 | 67 |
| | Pedobacter sp. GW460-11-11-14-LB5 | CA265_RS14415 | | pseudouridine synthase | strong | 31 | 67 |
| | Dechlorosoma suillum PS | Dsui_3205 | | pseudouridine synthase, RluA family | insig. | 33 | 67 |
| | Azospirillum sp. SherDot2 | MPMX19_05341 | | hypothetical protein | insig. | 32 | 63 |
| | Shewanella loihica PV-4 | Shew_1594 | | RluA family pseudouridine synthase (RefSeq) | sig. | 31 | 69 |
| | Pseudomonas fluorescens FW300-N1B4 | Pf1N1B4_3753 | | Ribosomal large subunit pseudouridine synthase A (EC 4.2.1.70) | sig. | 29 | 67 |