Homologs of CSW01_12705 from Vibrio cholerae E7946 ATCC 55056

RNA polymerase-associated protein RapA
SEED: RNA polymerase associated protein RapA (EC 3.6.1.-)
KEGG: ATP-dependent helicase HepA

184 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Vibrio cholerae E7946 ATCC 55056 CSW01_12705 RNA polymerase-associated protein RapA insig. 100 100
o Serratia liquefaciens MT49 IAI46_03275 RNA polymerase-associated protein RapA insig. 65 100
o Dickeya dadantii 3937 DDA3937_RS18235 RNA polymerase-associated protein RapA sig. 63 100
o Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF183 RNA polymerase associated protein RapA (EC 3.6.1.-) cofit 62 100
o Rahnella sp. WP5 EX31_RS03745 RNA polymerase-associated protein RapA cofit 63 100
o Enterobacter sp. TBS_079 MPMX20_00753 RNA polymerase-associated protein RapA strong 62 100
o Escherichia coli BL21 ECD_00061 RNA polymerase remodeling/recycling factor ATPase; RNA polymerase-associated, ATP-dependent RNA translocase strong 62 100
o Escherichia coli ECOR27 NOLOHH_03145 rapA RNA polymerase-associated protein RapA strong 62 100
o Escherichia coli ECRC100 OKFHMN_10800 rapA RNA polymerase-associated protein RapA strong 62 100
o Escherichia coli ECRC101 MCAODC_01315 rapA RNA polymerase-associated protein RapA strong 62 100
o Escherichia coli ECRC102 NIAGMN_08650 rapA RNA polymerase-associated protein RapA strong 62 100
o Escherichia coli ECRC62 BNILDI_08460 rapA RNA polymerase-associated protein RapA cofit 62 100
o Escherichia coli ECRC98 JDDGAC_14395 rapA RNA polymerase-associated protein RapA strong 62 100
o Escherichia coli ECRC99 KEDOAH_17355 rapA RNA polymerase-associated protein RapA no data 62 100
o Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_03599 RNA polymerase-associated protein RapA strong 62 100
o Escherichia coli Nissle 1917 ECOLIN_RS00315 RNA polymerase-associated protein RapA strong 62 100
o Escherichia coli BW25113 b0059 hepA ATP-dependent helicase HepA (NCBI) strong 62 100
o Dickeya dianthicola 67-19 HGI48_RS18170 RNA polymerase-associated protein RapA cofit 63 100
o Klebsiella michiganensis M5al BWI76_RS04570 RNA polymerase-associated protein RapA strong 62 100
o Klebsiella pneumoniae MRSN742743 KFA93_RS11265 rapA;go_function=ATP RNA polymerase-associated protein RapA cofit 62 100
o Enterobacter asburiae PDN3 EX28DRAFT_3651 Superfamily II DNA/RNA helicases, SNF2 family cofit 62 100
o Klebsiella pneumoniae MKP103 KDGMDA_12795 RNA polymerase-associated protein RapA sig. 62 100
o Escherichia coli ECOR38 HEPCGN_08790 rapA RNA polymerase-associated protein RapA cofit 62 100
o Escherichia fergusonii Becca EFB2_03986 RNA polymerase-associated protein RapA insig. 62 100
o Dickeya dianthicola ME23 DZA65_RS19310 RNA polymerase-associated protein RapA cofit 62 100
o Pantoea agglomerans CFBP13505 P0401 PagCFBP13516_RS16365 rapA RNA polymerase-associated protein RapA cofit 62 100
o Pantoea sp. MT58 IAI47_16055 RNA polymerase-associated protein RapA sig. 62 100
o Pectobacterium carotovorum WPP14 HER17_RS02990 RNA polymerase-associated protein RapA cofit 63 100
o Erwinia amylovora T8 OLJFJH_01340 RNA polymerase-associated protein RapA strong 61 100
o Erwinia tracheiphila HP pepo 2.2 IJEDHG_06075 RNA polymerase-associated protein RapA insig. 60 100
o Erwinia tracheiphila SCR3 LU632_RS02805 rapA RNA polymerase-associated protein RapA sig. 60 100
o Shewanella sp. ANA-3 Shewana3_0574 ATP-dependent helicase HepA (RefSeq) sig. 59 100
o Shewanella oneidensis MR-1 SO0575 hepA RNA polymerase-associated protein HepA (NCBI ptt file) sig. 59 100
o Shewanella amazonensis SB2B Sama_3131 ATP-dependent helicase HepA (RefSeq) sig. 59 100
o Shewanella loihica PV-4 Shew_0457 ATP-dependent helicase HepA (RefSeq) sig. 58 100
o Pseudomonas sp. S08-1 OH686_19955 RNA polymerase associated protein RapA insig. 51 100
o Pseudomonas sp. RS175 PFR28_00612 RNA polymerase-associated protein RapA insig. 51 99
o Pseudomonas protegens RBAN4 FABNJH_06835 rapA RNA polymerase-associated protein RapA insig. 50 99
o Pseudomonas sp. DMC3 GFF2193 RNA polymerase-associated protein RapA cofit 51 99
o Pseudomonas lactucae CFBP13502 GEMAOFIL_01492 RNA polymerase-associated protein RapA insig. 51 99
o Pseudomonas fluorescens FW300-N2C3 AO356_04975 RNA polymerase-associated protein RapA sig. 50 99
o Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_2845 RNA polymerase associated protein RapA (EC 3.6.1.-) strong 50 99
o Pseudomonas sp. SVBP6 COO64_RS17145 rapA RNA polymerase-associated protein RapA cofit 50 99
o Pseudomonas fluorescens FW300-N2E3 AO353_17155 RNA polymerase-associated protein RapA sig. 50 99
o Pseudomonas syringae pv. syringae B728a Psyr_3842 SNF2-related:Helicase, C-terminal:Type III restriction enzyme, res subunit sig. 50 99
o Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_3842 SNF2-related:Helicase, C-terminal:Type III restriction enzyme, res subunit sig. 50 99
o Pseudomonas segetis P6 ACVTMO_RS16290 rapA RNA polymerase-associated protein RapA sig. 50 99
o Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_3224 RNA polymerase associated protein RapA (EC 3.6.1.-) sig. 50 99
o Pseudomonas fluorescens GW456-L13 PfGW456L13_4599 RNA polymerase associated protein RapA (EC 3.6.1.-) sig. 50 99
o Pseudomonas orientalis W4I3 QF045_RS09435 RNA polymerase-associated protein RapA insig. 50 99
o Pseudomonas stutzeri RCH2 Psest_1327 Superfamily II DNA/RNA helicases, SNF2 family sig. 51 99
o Pseudomonas fluorescens SBW25 PFLU_RS06675 RNA polymerase-associated protein RapA cofit 50 99
o Pseudomonas fluorescens SBW25-INTG PFLU_RS06675 RNA polymerase-associated protein RapA sig. 50 99
o Pseudomonas aeruginosa MRSN321 DY961_RS00330 rapA;go_function=ATP RNA polymerase-associated protein RapA sig. 50 99
o Pseudomonas aeruginosa PA14 IKLFDK_16965 RNA polymerase-associated protein RapA sig. 50 99
o Pseudomonas aeruginosa PUPa3 DQ20_RS40690 rapA;go_function=ATP RNA polymerase-associated protein RapA sig. 50 99
o Pseudomonas putida KT2440 PP_1145 RNA polymerase-associated protein RapA sig. 50 99
o Pseudomonas sp. BP01 JOY50_RS24235 rapA RNA polymerase-associated protein RapA cofit 50 99
o Pseudomonas simiae WCS417 PS417_06645 RNA polymerase-associated protein RapA strong 50 99
o Alteromonas macleodii MIT1002 MIT1002_00659 RNA polymerase-associated protein RapA cofit 46 99
o Marinobacter adhaerens HP15 HP15_3376 RNA polymerase-associated protein RapA strong 45 100
o Acinetobacter baumannii LAC-4 RR41_RS05200 RNA polymerase-associated protein RapA insig. 44 97
o Acinetobacter radioresistens SK82 MPMX26_01027 RNA polymerase-associated protein RapA strong 43 97
o Rhodanobacter sp. FW510-T8 OKGIIK_09865 rapA RNA polymerase-associated protein RapA insig. 39 100
o Rhodanobacter denitrificans MT42 LRK55_RS02635 RNA polymerase-associated protein RapA strong 39 100
o Rhodanobacter denitrificans FW104-10B01 LRK54_RS02885 RNA polymerase-associated protein RapA strong 39 100
o Rhodanobacter sp000427505 FW510-R12 LRK53_RS07105 RNA polymerase-associated protein RapA insig. 38 100
o Dyella japonica UNC79MFTsu3.2 ABZR86_RS09245 RNA polymerase-associated protein RapA sig. 39 99
  Pseudomonas segetis P6 ACVTMO_RS09795 DEAD/DEAH box helicase insig. 26 47
  Rhodopseudomonas palustris CGA009 TX73_011450 helicase-related protein insig. 36 22
  Escherichia coli ECRC100 OKFHMN_11670 hepA helicase cofit 25 46
  Escherichia coli ECRC101 MCAODC_02185 hepA helicase strong 25 46
  Escherichia coli ECRC102 NIAGMN_09520 hepA helicase cofit 25 46
  Escherichia coli ECRC62 BNILDI_09545 hepA helicase cofit 25 46
  Escherichia coli ECRC98 JDDGAC_15270 hepA helicase cofit 25 46
  Escherichia coli ECRC99 KEDOAH_16475 hepA helicase no data 25 46
  Sinorhizobium meliloti 1021 SMc02152 helicase insig. 36 20
  Azospirillum brasilense Sp245 AZOBR_RS30290 RNA helicase insig. 32 28
  Pseudomonas sp. S08-1 OH686_23015 hypothetical protein insig. 33 19
  Enterobacter sp. TBS_079 MPMX20_00569 RNA polymerase-associated protein RapA insig. 35 17
  Rhodanobacter sp000427505 FW510-R12 LRK53_RS01985 DISARM system SNF2-like helicase DrmD insig. 34 17
  Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.688.1 helicase (Snf2/Rad54 family) no data 37 19
  Paraburkholderia graminis OAS925 ABIE53_003106 superfamily II DNA or RNA helicase insig. 37 17
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_6015 RNA polymerase associated protein RapA (EC 3.6.1.-) insig. 29 36
  Kangiella aquimarina DSM 16071 B158DRAFT_1267 Superfamily II DNA/RNA helicases, SNF2 family insig. 37 18
  Paraburkholderia sabiae LMG 24235 QEN71_RS00695 DEAD/DEAH box helicase cofit 32 17
  Castellaniella sp019104865 MT123 ABCV34_RS02050 helicase-related protein cofit 30 18
  Pseudomonas segetis P6 ACVTMO_RS09785 SNF2-related protein insig. 26 28
  Pseudomonas aeruginosa PUPa3 DQ20_RS34555 SNF2-related protein strong 26 28
  Pseudomonas segetis P6 ACVTMO_RS09785 SNF2-related protein insig. 43 11
  Pseudomonas aeruginosa PUPa3 DQ20_RS34555 SNF2-related protein strong 43 11
  Pseudomonas sp. S08-1 OH686_23015 hypothetical protein insig. 33 13
  Bosea sp. OAE506 ABIE41_RS19075 DISARM system SNF2-like helicase DrmD insig. 33 17
  Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.688.1 helicase (Snf2/Rad54 family) no data 51 6
  Kangiella aquimarina DSM 16071 B158DRAFT_1267 Superfamily II DNA/RNA helicases, SNF2 family insig. 39 8
  Rhodopseudomonas palustris CGA009 TX73_011450 helicase-related protein insig. 30 18
  Azospirillum brasilense Sp245 AZOBR_RS30290 RNA helicase insig. 37 9
  Sinorhizobium meliloti 1021 SMc02152 helicase insig. 36 11
  Enterobacter sp. TBS_079 MPMX20_00569 RNA polymerase-associated protein RapA insig. 23 27
  Cupriavidus basilensis FW507-4G11 RR42_RS08740 helicase insig. 24 48
  Pseudomonas aeruginosa PUPa3 DQ20_RS34580 phospholipase D-like domain-containing anti-phage protein strong 39 8
  Synechocystis sp000284455 PCC 6803 SGL_RS01585 phospholipase D-like domain-containing protein insig. 36 11
  Rhodanobacter sp000427505 FW510-R12 LRK53_RS01985 DISARM system SNF2-like helicase DrmD insig. 35 8
  Paraburkholderia graminis OAS925 ABIE53_003106 superfamily II DNA or RNA helicase insig. 31 8
  Variovorax sp. SCN45 GFF1917 ATP-dependent RNA helicase Bcep18194_A5658 strong 36 8
  Bacteroides ovatus ATCC 8483 BACOVA_01961 SNF2 family N-terminal domain protein insig. 23 46
  Variovorax sp. OAS795 ABID97_RS22030 DEAD/DEAH box helicase strong 36 8
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_6015 RNA polymerase associated protein RapA (EC 3.6.1.-) insig. 30 11
  Castellaniella sp019104865 MT123 ABCV34_RS07925 DEAD/DEAH box helicase cofit 30 12
  Hydrogenophaga sp. GW460-11-11-14-LB1 GFF222 ATP-dependent RNA helicase Bcep18194_A5658 insig. 35 8
  Shewanella amazonensis SB2B Sama_0383 ATP-dependent RNA helicase RhlE (RefSeq) insig. 35 8
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS14095 hypothetical protein insig. 24 21
  Ralstonia sp. UNC404CL21Col ABZR87_RS15540 DEAD/DEAH box helicase sig. 29 12
  Ralstonia solanacearum PSI07 RPSI07_RS13580 ATP-dependent helicase sig. 29 12
  Bacteroides thetaiotaomicron VPI-5482 BT4628 ATP-dependent helicase (NCBI ptt file) insig. 33 11
  Pseudomonas aeruginosa MRSN321 DY961_RS03505 helicase-related protein strong 27 18
  Desulfovibrio vulgaris Hildenborough JW710 DVU3310 deaD ATP-dependent RNA helicase, DEAD/DEAH family (TIGR) strong 27 13
  Pseudomonas aeruginosa PUPa3 DQ20_RS34580 phospholipase D-like domain-containing anti-phage protein strong 30 17
  Ralstonia solanacearum IBSBF1503 RALBFv3_RS03650 ATP-dependent helicase insig. 29 12
  Ralstonia solanacearum UW163 UW163_RS10020 ATP-dependent helicase insig. 29 12
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_0444 Superfamily II DNA/RNA helicases, SNF2 family insig. 27 12
  Paraburkholderia sabiae LMG 24235 QEN71_RS00695 DEAD/DEAH box helicase cofit 39 7
  Acidovorax sp. GW101-3H11 Ac3H11_1125 ATP-dependent RNA helicase Bcep18194_A5658 no data 34 8
  Vibrio cholerae E7946 ATCC 55056 CSW01_19065 ATP-dependent helicase insig. 31 12
  Escherichia coli ECRC100 OKFHMN_05760 zorD Zorya protein ZorD cofit 24 13
  Pontibacter actiniarum KMM 6156, DSM 19842 CA264_17010 helicase SNF2 strong 22 45
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS14095 hypothetical protein insig. 51 5
  Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.3463.1 COG0553: Superfamily II DNA/RNA helicases, SNF2 family insig. 27 13
  Cupriavidus basilensis FW507-4G11 RR42_RS14810 DEAD/DEAH box helicase insig. 27 15
  Shewanella loihica PV-4 Shew_0604 DEAD/DEAH box helicase domain-containing protein (RefSeq) insig. 35 10
  Marinobacter adhaerens HP15 HP15_3607 DEAD/DEAH box helicase domain protein insig. 32 13
  Erwinia tracheiphila HP pepo 2.2 IJEDHG_14040 helicase insig. 32 15
  Erwinia tracheiphila SCR3 LU632_RS20970 DEAD/DEAH box helicase cofit 32 15
  Ralstonia solanacearum GMI1000 RS_RS11095 ATP-dependent helicase sig. 28 12
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_00308 Superfamily II DNA and RNA helicase strong 27 12
  Paraburkholderia sabiae LMG 24235 QEN71_RS24485 DEAD/DEAH box helicase insig. 26 13
  Paraburkholderia graminis OAS925 ABIE53_001438 ATP-dependent RNA helicase RhlE strong 26 12
  Dechlorosoma suillum PS Dsui_3406 DNA/RNA helicase, superfamily II insig. 34 8
  Shewanella oneidensis MR-1 SO3783 ATP-dependent RNA helicase, DEAD box family (NCBI ptt file) insig. 32 11
  Shewanella loihica PV-4 Shew_1454 DEAD/DEAH box helicase domain-containing protein (RefSeq) strong 31 12
  Azospirillum sp. SherDot2 MPMX19_00976 ATP-dependent RNA helicase RhlE insig. 29 10
  Pontibacter actiniarum KMM 6156, DSM 19842 CA264_00855 RNA helicase sig. 31 11
  Burkholderia phytofirmans PsJN BPHYT_RS06155 DEAD/DEAH box helicase strong 26 12
  Bosea sp. OAE506 ABIE41_RS19075 DISARM system SNF2-like helicase DrmD insig. 49 4
  Fusobacterium nucleatum SB010 HUW76_06360 DEAD/DEAH box helicase family protein cofit 43 5
  Shewanella sp. ANA-3 Shewana3_0810 DEAD/DEAH box helicase domain-containing protein (RefSeq) insig. 32 11
  Erwinia amylovora T8 OLJFJH_07310 helicase insig. 31 15
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_04222 ATP-dependent RNA helicase RhlE sig. 31 12
  Pseudomonas stutzeri RCH2 Psest_1627 Superfamily II DNA and RNA helicases strong 31 8
  Cupriavidus basilensis FW507-4G11 RR42_RS36870 helicase SNF2 insig. 30 13
  Kangiella aquimarina DSM 16071 B158DRAFT_0320 Superfamily II DNA and RNA helicases insig. 32 8
  Paraburkholderia graminis OAS925 ABIE53_003462 ATP-dependent RNA helicase RhlE sig. 31 12
  Herbaspirillum seropedicae SmR1 HSERO_RS08565 RNA helicase insig. 31 12
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_06540 Superfamily II DNA or RNA helicase, SNF2 family insig. 30 16
  Acinetobacter radioresistens SK82 MPMX26_02863 RNA polymerase-associated protein RapA insig. 26 13
  Bacteroides ovatus ATCC 8483 BACOVA_05421 helicase C-terminal domain protein insig. 26 14
  Castellaniella sp019104865 MT123 ABCV34_RS02050 helicase-related protein cofit 36 10
  Castellaniella sp019104865 MT123 ABCV34_RS12515 DEAD/DEAH box helicase insig. 32 10
  Burkholderia phytofirmans PsJN BPHYT_RS24775 helicase insig. 30 16
  Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS14585 DNA helicase RecQ strong 30 12
  Sphingobium sp. HT1-2 GFF3480 ATP-dependent RNA helicase Atu1833 cofit 25 11
  Paraburkholderia graminis OAS925 ABIE53_006198 superfamily II DNA or RNA helicase insig. 29 16
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS14945 helicase insig. 26 12
  Phocaeicola dorei CL03T12C01 ABI39_RS10235 DNA helicase RecQ insig. 30 12
  Marinobacter adhaerens HP15 HP15_2099 DEAD/DEAH box helicase domain protein sig. 27 12
  Mycobacterium tuberculosis H37Rv Rv2101 Probable helicase HelZ insig. 33 8
  Methylophilus sp. DMC18 GFF250 ATP-dependent RNA helicase RhlE insig. 32 11
  Shewanella sp. ANA-3 Shewana3_1422 4a-hydroxytetrahydrobiopterin dehydratase (RefSeq) no data 30 12
  Shewanella oneidensis MR-1 SO3125 ATP-dependent RNA helicase, DEAD box family (NCBI ptt file) insig. 30 12
  Magnetospirillum magneticum AMB-1 AMB_RS04645 ATP-dependent helicase cofit 29 12
  Sphingomonas koreensis DSMZ 15582 Ga0059261_1574 Superfamily II DNA and RNA helicases strong 26 10
  Shewanella oneidensis MR-1 SO4034 deaD ATP-dependent RNA helicase DeaD (NCBI ptt file) strong 22 21
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS01200 DEAD/DEAH box helicase insig. 26 14
  Cellulophaga baltica 18 M666_RS16910 DEAD/DEAH box helicase insig. 26 12
  Shewanella amazonensis SB2B Sama_0512 ATP-dependent RNA helicase DeaD (RefSeq) strong 22 12
  Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.1841.1 DEAD-box ATP-dependent RNA helicase CshA (EC 3.6.4.13) insig. 21 13
  Herbaspirillum seropedicae SmR1 HSERO_RS17855 DEAD/DEAH box helicase sig. 28 11
  Pseudomonas syringae pv. syringae B728a Psyr_3791 Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal sig. 25 11
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_3791 Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal insig. 25 11
  Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF2104 ATP-dependent RNA helicase SrmB insig. 24 16
  Fusobacterium nucleatum SB010 HUW76_08675 DEAD/DEAH box helicase family protein strong 24 17
  Erwinia tracheiphila HP pepo 2.2 IJEDHG_13975 DEAD/DEAH family ATP-dependent RNA helicase no data 23 18
  Erwinia tracheiphila SCR3 LU632_RS21030 DEAD/DEAH family ATP-dependent RNA helicase no data 23 18
  Shewanella amazonensis SB2B Sama_0808 DEAD/DEAH box helicase domain-containing protein (RefSeq) strong 29 11