Homologs of Atu3084 from Agrobacterium fabrum C58

RNA polymerase sigma factor
SEED: RNA polymerase sigma factor RpoE
KEGG: RNA polymerase sigma-70 factor, ECF subfamily

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Agrobacterium fabrum C58 Atu3084 RNA polymerase sigma factor insig. 100 100
o Brevundimonas sp. GW460-12-10-14-LB2 A4249_RS10790 RNA polymerase sigma factor insig. 58 98
o Caulobacter crescentus NA1000 CCNA_02837 RNA polymerase ECF-type sigma factor insig. 57 96
o Caulobacter crescentus NA1000 Δfur CCNA_02837 RNA polymerase ECF-type sigma factor cofit 57 96
o Burkholderia phytofirmans PsJN BPHYT_RS24975 RNA polymerase sigma24 factor strong 58 96
o Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_02732 RNA polymerase sigma-70 factor, ECF subfamily insig. 58 96
o Paraburkholderia graminis OAS925 ABIE53_005321 RNA polymerase sigma factor (sigma-70 family) sig. 57 96
o Cupriavidus basilensis FW507-4G11 RR42_RS05810 RNA polymerase sigma factor insig. 53 98
o Pseudomonas simiae WCS417 PS417_11995 RNA polymerase sigma factor insig. 54 96
o Pseudomonas fluorescens SBW25 PFLU_RS12745 RNA polymerase sigma factor insig. 53 96
o Pseudomonas fluorescens SBW25-INTG PFLU_RS12745 RNA polymerase sigma factor insig. 53 96
o Paraburkholderia sabiae LMG 24235 QEN71_RS16180 RNA polymerase sigma factor insig. 57 98
o Variovorax sp. SCN45 GFF4544 RNA polymerase sigma factor RpoE insig. 55 88
o Pseudomonas lactucae CFBP13502 GEMAOFIL_02674 hypothetical protein cofit 54 96
o Phaeobacter inhibens DSM 17395 PGA1_c08510 RNA polymerase sigma factor (ECF01 subgroup, ECF20 subgroup) insig. 41 97
  Rhodopseudomonas palustris CGA009 TX73_003315 RNA polymerase sigma factor insig. 40 100
o Azospirillum brasilense Sp245 AZOBR_RS31600 RNA polymerase insig. 41 96
o Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_4220 RNA polymerase sigma factor RpoE insig. 36 97
  Azospirillum sp. SherDot2 MPMX19_05214 ECF RNA polymerase sigma factor SigE insig. 40 96
  Rhodopseudomonas palustris CGA009 TX73_023085 RNA polymerase sigma factor cofit 37 97
o Xanthobacter sp. DMC5 GFF1406 RNA polymerase sigma-H factor insig. 39 98
  Azospirillum sp. SherDot2 MPMX19_05475 hypothetical protein no data 40 98
  Azospirillum sp. SherDot2 MPMX19_04274 RNA polymerase sigma-H factor insig. 42 85
  Azospirillum brasilense Sp245 AZOBR_RS28490 hypothetical protein sig. 40 97
o Rhodospirillum rubrum S1H Rru_A2537 Sigma-24 (FecI) (NCBI) insig. 39 96
  Magnetospirillum magneticum AMB-1 AMB_RS14160 RNA polymerase sigma factor cofit 36 94
  Pseudomonas orientalis W4I3 QF045_RS00535 sigma-70 family RNA polymerase sigma factor cofit 34 96
  Pseudomonas fluorescens FW300-N2E3 AO353_07625 RNA polymerase subunit sigma-70 insig. 30 96
o Shewanella amazonensis SB2B Sama_2611 ECF subfamily RNA polymerase sigma-24 factor (RefSeq) insig. 30 95
  Ralstonia solanacearum IBSBF1503 RALBFv3_RS04270 DNA-directed RNA polymerase sigma-70 factor insig. 32 91
  Ralstonia solanacearum UW163 UW163_RS09400 DNA-directed RNA polymerase sigma-70 factor insig. 32 91
o Pseudomonas syringae pv. syringae B728a Psyr_3958 RNA polymerase, sigma-24 subunit, RpoE strong 31 98
o Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_3958 RNA polymerase, sigma-24 subunit, RpoE strong 31 98
  Ralstonia solanacearum PSI07 RPSI07_RS13090 DNA-directed RNA polymerase sigma-70 factor insig. 32 97
o Bacteroides thetaiotaomicron VPI-5482 BT4571 RNA polymerase ECF-type sigma factor (NCBI ptt file) strong 29 94
  Ralstonia sp. UNC404CL21Col ABZR87_RS16160 sigma-70 family RNA polymerase sigma factor insig. 31 94
  Azospirillum brasilense Sp245 AZOBR_RS10625 RNA polymerase sigma-70 factor insig. 33 84
o Sphingomonas koreensis DSMZ 15582 Ga0059261_2617 RNA polymerase sigma factor, sigma-70 family insig. 33 85
o Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS12920 RNA polymerase sigma-70 factor cofit 26 95
o Bacteroides ovatus ATCC 8483 BACOVA_00669 Sigma-70 region 2 insig. 31 96
  Pseudomonas fluorescens SBW25 PFLU_RS07230 RNA polymerase sigma factor RpoE sig. 30 99
  Pseudomonas fluorescens SBW25-INTG PFLU_RS07230 RNA polymerase sigma factor RpoE strong 30 99
o Pseudomonas sp. DMC3 GFF2277 RNA polymerase sigma-H factor cofit 30 99
  Pseudomonas lactucae CFBP13502 GEMAOFIL_01572 RNA polymerase sigma-H factor cofit 30 99
o Pseudomonas sp. RS175 PFR28_00690 RNA polymerase sigma-H factor strong 30 99
  Pseudomonas orientalis W4I3 QF045_RS09835 RNA polymerase sigma factor RpoE cofit 30 99
  Pseudomonas simiae WCS417 PS417_07120 RNA polymerase sigma-H factor strong 30 99
o Pseudomonas fluorescens GW456-L13 PfGW456L13_4516 RNA polymerase sigma-H factor AlgT sig. 30 99
o Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_3323 RNA polymerase sigma-H factor AlgT no data 30 99
o Pseudomonas fluorescens FW300-N2C3 AO356_04575 RNA polymerase subunit sigma strong 30 99
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_2756 RNA polymerase sigma-H factor AlgT strong 30 99
  Pseudomonas fluorescens FW300-N2E3 AO353_17625 RNA polymerase subunit sigma strong 30 98
o Pseudomonas sp. BP01 JOY50_RS14665 rpoE RNA polymerase sigma factor RpoE insig. 30 98
o Pseudomonas putida KT2440 PP_1427 RNA polymerase sigma E factor sig. 30 98
  Bosea sp. OAE506 ABIE41_RS07610 sigma-70 family RNA polymerase sigma factor insig. 30 98
o Pseudomonas sp. SVBP6 COO64_RS16525 rpoE RNA polymerase sigma factor RpoE insig. 30 98
o Pseudomonas stutzeri RCH2 Psest_3100 RNA polymerase sigma factor RpoE strong 30 98
  Enterobacter asburiae PDN3 EX28DRAFT_2390 RNA polymerase sigma factor, sigma-70 family cofit 29 93
o Pseudomonas sp. S08-1 OH686_20045 RNA polymerase sigma factor RpoE strong 32 98
  Bacteroides stercoris CC31F HMPREF1181_RS05860 sigma-70 family RNA polymerase sigma factor insig. 32 79
o Phocaeicola dorei CL03T12C01 ABI39_RS09920 sigma-70 family RNA polymerase sigma factor insig. 29 96
  Pseudomonas fluorescens SBW25 PFLU_RS16335 sigma-70 family RNA polymerase sigma factor insig. 29 93
  Pseudomonas fluorescens SBW25-INTG PFLU_RS16335 sigma-70 family RNA polymerase sigma factor insig. 29 93
o Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS14290 sigma-70 family RNA polymerase sigma factor insig. 29 96
  Bacteroides stercoris CC31F HMPREF1181_RS08110 sigma-70 family RNA polymerase sigma factor insig. 29 96
  Pseudomonas stutzeri RCH2 Psest_3456 RNA polymerase sigma factor, sigma-70 family insig. 31 94
  Bacteroides ovatus ATCC 8483 BACOVA_05165 Sigma-70 region 2 insig. 30 78
o Pseudomonas segetis P6 ACVTMO_RS06940 rpoE RNA polymerase sigma factor RpoE strong 32 98
o Pseudomonas aeruginosa MRSN321 DY961_RS08690 rpoE;go_component=cytoplasm|0005737||IEA;go_function=sigma RNA polymerase sigma factor RpoE strong 32 98
o Pseudomonas aeruginosa PA14 IKLFDK_03265 alginate biosynthesis protein AlgZ/FimS strong 32 98
o Pseudomonas aeruginosa PUPa3 DQ20_RS44160 rpoE;go_component=cytoplasm|0005737||IEA;go_function=sigma RNA polymerase sigma factor RpoE strong 32 98
o Dechlorosoma suillum PS Dsui_2453 RNA polymerase sigma factor RpoE no data 30 92
o Alteromonas macleodii MIT1002 MIT1002_03807 Sigma-W factor insig. 25 98
  Ralstonia sp. UNC404CL21Col ABZR87_RS10165 RNA polymerase sigma factor RpoE strong 30 96
  Cupriavidus basilensis FW507-4G11 RR42_RS15915 RNA polymerase subunit sigma-24 insig. 30 90
o Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.3681.1 RNA polymerase sigma factor RpoE insig. 33 92
  Mycobacterium tuberculosis H37Rv Rv1221 Alternative RNA polymerase sigma factor SigE insig. 32 90
  Burkholderia phytofirmans PsJN BPHYT_RS14405 RNA polymerase sigma factor RpoE no data 30 92
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_04355 RNA polymerase, sigma-24 subunit, RpoE no data 30 92
  Paraburkholderia graminis OAS925 ABIE53_003043 RNA polymerase sigma-70 factor (ECF subfamily) strong 30 92
  Phocaeicola dorei CL03T12C01 ABI39_RS01635 RNA polymerase sigma-70 factor insig. 27 93
  Agrobacterium fabrum C58 Atu0474 putative RNA polymerase sigma-70 factor insig. 31 97
  Bacteroides thetaiotaomicron VPI-5482 BT2044 RNA polymerase ECF-type sigma factor (NCBI ptt file) insig. 29 96
  Variovorax sp. SCN45 GFF3817 RNA polymerase sigma factor insig. 32 91
  Paraburkholderia sabiae LMG 24235 QEN71_RS04575 RNA polymerase sigma factor RpoE strong 30 92
  Azospirillum sp. SherDot2 MPMX19_01371 hypothetical protein insig. 32 87
  Ralstonia solanacearum GMI1000 RS_RS11855 DNA-directed RNA polymerase sigma-70 factor insig. 31 97
  Hydrogenophaga sp. GW460-11-11-14-LB1 GFF2666 RNA polymerase sigma-70 factor, ECF family insig. 30 92
o Shewanella sp. ANA-3 Shewana3_0763 ECF subfamily RNA polymerase sigma-24 factor (RefSeq) insig. 24 93
o Pontibacter actiniarum KMM 6156, DSM 19842 CA264_11965 RNA polymerase subunit sigma insig. 28 96
o Castellaniella sp019104865 MT123 ABCV34_RS08355 RNA polymerase sigma factor RpoE strong 31 96
o Lysobacter sp. OAE881 ABIE51_RS13890 RNA polymerase sigma factor RpoE strong 33 96
  Bacteroides thetaiotaomicron VPI-5482 BT4347 RNA polymerase ECF-type sigma factor (NCBI ptt file) insig. 29 78
  Caulobacter crescentus NA1000 CCNA_03589 RNA polymerase EcfG family sigma factor sigT strong 33 82
  Caulobacter crescentus NA1000 Δfur CCNA_03589 RNA polymerase EcfG family sigma factor sigT cofit 33 82
o Kangiella aquimarina DSM 16071 B158DRAFT_2027 RNA polymerase sigma factor, sigma-70 family insig. 27 96
  Rhizobium sp. OAE497 ABIE40_RS01975 sigma-70 family RNA polymerase sigma factor insig. 27 97
  Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS02390 RNA polymerase sigma-70 factor sig. 26 93
  Ralstonia solanacearum IBSBF1503 RALBFv3_RS14445 RNA polymerase sigma factor RpoE strong 30 96
  Ralstonia solanacearum GMI1000 RS_RS05225 RNA polymerase sigma factor RpoE strong 30 96