| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Xanthomonas campestris pv. campestris strain 8004 | 1.0 | Xcc-8004.4620.1 | | Alanine racemase (EC 5.1.1.1) | 1.0 | Xcc-8004.5020.1 | | Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) | 0.63 | 16 |
| Rhodanobacter denitrificans MT42 | 0.67 | LRK55_RS00355 | | alanine racemase | 0.49 | LRK55_RS08360 | | shikimate dehydrogenase | — | — |
| Rhodanobacter denitrificans FW104-10B01 | 0.67 | LRK54_RS00585 | | alanine racemase | 0.49 | LRK54_RS08595 | | shikimate dehydrogenase | — | — |
| Rhodanobacter sp. FW510-T8 | 0.67 | OKGIIK_06670 | alr | alanine racemase | 0.46 | OKGIIK_15365 | aroE | shikimate dehydrogenase | — | — |
| Pseudomonas sp. S08-1 | 0.65 | OH686_13695 | | alanine racemase | 0.37 | OH686_12485 | | Shikimate 5-dehydrogenase I alpha | low | > 80 |
| Pseudomonas putida KT2440 | 0.64 | PP_5269 | | alanine racemase, PLP-binding | 0.37 | PP_0074 | | shikimate 5-dehydrogenase | — | — |
| Pseudomonas fluorescens SBW25-INTG | 0.62 | PFLU_RS29370 | | alanine racemase | 0.39 | PFLU_RS00120 | | shikimate dehydrogenase | — | — |
| Pseudomonas simiae WCS417 | 0.62 | PS417_27695 | | alanine racemase | 0.39 | PS417_00125 | | shikimate dehydrogenase | — | — |
| Pseudomonas fluorescens SBW25 | 0.62 | PFLU_RS29370 | | alanine racemase | 0.39 | PFLU_RS00120 | | shikimate dehydrogenase | — | — |
| Pseudomonas fluorescens GW456-L13 | 0.62 | PfGW456L13_814 | | Alanine racemase (EC 5.1.1.1) | 0.38 | PfGW456L13_644 | | Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) | — | — |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.62 | Psyr_0237 | | alanine racemase | 0.37 | Psyr_0025 | | shikimate dehydrogenase | — | — |
| Pseudomonas syringae pv. syringae B728a | 0.62 | Psyr_0237 | | alanine racemase | 0.37 | Psyr_0025 | | shikimate dehydrogenase | — | — |
| Pseudomonas fluorescens FW300-N1B4 | 0.62 | Pf1N1B4_2146 | | Alanine racemase (EC 5.1.1.1) | 0.38 | Pf1N1B4_1906 | | Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) | — | — |
| Pseudomonas fluorescens FW300-N2E3 | 0.62 | AO353_09145 | | alanine racemase | 0.38 | AO353_10670 | | shikimate dehydrogenase | — | — |
| Pseudomonas fluorescens FW300-N2C3 | 0.62 | AO356_12630 | | alanine racemase | 0.38 | AO356_11315 | | shikimate dehydrogenase | — | — |
| Pseudomonas fluorescens FW300-N2E2 | 0.61 | Pf6N2E2_4393 | | Alanine racemase (EC 5.1.1.1) | 0.38 | Pf6N2E2_4130 | | Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) | — | — |
| Pseudomonas sp. RS175 | 0.61 | PFR28_04397 | | Alanine racemase | 0.39 | PFR28_04655 | | Shikimate dehydrogenase (NADP(+)) | — | — |
| Pseudomonas stutzeri RCH2 | 0.41 | Psest_0699 | | alanine racemase | 0.35 | Psest_0029 | | shikimate 5-dehydrogenase | — | — |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.40 | GFF1422 | | Alanine racemase (EC 5.1.1.1) | 0.35 | GFF2397 | | Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) | low | > 78 |
| Klebsiella michiganensis M5al | 0.40 | BWI76_RS01920 | | alanine racemase | 0.36 | BWI76_RS25645 | | shikimate dehydrogenase | low | > 92 |
| Escherichia coli Nissle 1917 | 0.40 | ECOLIN_RS23405 | | alanine racemase | 0.36 | ECOLIN_RS18840 | | shikimate dehydrogenase | low | > 55 |
| Kangiella aquimarina DSM 16071 | 0.40 | B158DRAFT_2013 | | alanine racemase | 0.30 | B158DRAFT_0259 | | shikimate 5-dehydrogenase | 0.61 | 21 |
| Escherichia coli BL21 | 0.40 | ECD_03925 | | alanine racemase, biosynthetic, PLP-binding | 0.36 | ECD_03132 | | dehydroshikimate reductase, NAD(P)-binding | low | > 61 |
| Escherichia fergusonii Becca | 0.40 | EFB2_04547 | | Alanine racemase, biosynthetic | 0.36 | EFB2_00542 | | Shikimate dehydrogenase (NADP(+)) | low | > 86 |
| Escherichia coli BW25113 | 0.40 | b4053 | alr | alanine racemase (NCBI) | 0.36 | b3281 | aroE | dehydroshikimate reductase, NAD(P)-binding (NCBI) | low | > 76 |
| Escherichia coli ECOR38 | 0.40 | HEPCGN_11540 | alr | alanine racemase | 0.36 | HEPCGN_16385 | aroE | shikimate dehydrogenase | low | > 87 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.40 | OHPLBJKB_03990 | | Alanine racemase, biosynthetic | 0.36 | OHPLBJKB_00422 | | Shikimate dehydrogenase (NADP(+)) | low | > 73 |
| Escherichia coli ECOR27 | 0.40 | NOLOHH_05175 | alr | alanine racemase | 0.35 | NOLOHH_09355 | aroE | shikimate dehydrogenase | low | > 75 |
| Escherichia coli ECRC62 | 0.40 | BNILDI_06350 | alr | alanine racemase | 0.35 | BNILDI_02165 | aroE | shikimate dehydrogenase | low | > 75 |
| Escherichia coli ECRC99 | 0.40 | KEDOAH_15225 | alr | alanine racemase | 0.36 | KEDOAH_10585 | aroE | shikimate dehydrogenase | — | — |
| Escherichia coli ECRC98 | 0.40 | JDDGAC_16560 | alr | alanine racemase | 0.36 | JDDGAC_21185 | aroE | shikimate dehydrogenase | low | > 86 |
| Escherichia coli ECRC101 | 0.40 | MCAODC_03435 | alr | alanine racemase | 0.36 | MCAODC_08085 | aroE | shikimate dehydrogenase | low | > 87 |
| Enterobacter sp. TBS_079 | 0.40 | MPMX20_02698 | | Alanine racemase, catabolic | 0.35 | MPMX20_04189 | | Shikimate dehydrogenase (NADP(+)) | low | > 85 |
| Escherichia coli ECRC102 | 0.40 | NIAGMN_10770 | alr | alanine racemase | 0.36 | NIAGMN_15325 | aroE | shikimate dehydrogenase | — | — |
| Escherichia coli ECRC100 | 0.40 | OKFHMN_12925 | alr | alanine racemase | 0.36 | OKFHMN_17565 | aroE | shikimate dehydrogenase | low | > 80 |
| Dickeya dadantii 3937 | 0.39 | DDA3937_RS17510 | | alanine racemase | 0.36 | DDA3937_RS19100 | | shikimate dehydrogenase | — | — |
| Vibrio cholerae E7946 ATCC 55056 | 0.39 | CSW01_01955 | | alanine racemase | 0.38 | CSW01_00280 | | shikimate dehydrogenase | — | — |
| Herbaspirillum seropedicae SmR1 | 0.39 | HSERO_RS10740 | | alanine racemase | 0.37 | HSERO_RS01990 | | shikimate 5-dehydrogenase | — | — |
| Enterobacter asburiae PDN3 | 0.39 | EX28DRAFT_4259 | | alanine racemase | 0.35 | EX28DRAFT_0046 | | shikimate dehydrogenase | low | > 76 |
| Erwinia tracheiphila SCR3 | 0.39 | LU632_RS13065 | dadX | catabolic alanine racemase DadX | 0.34 | LU632_RS22445 | aroE | shikimate dehydrogenase | — | — |
| Pantoea sp. MT58 | 0.39 | IAI47_08895 | | catabolic alanine racemase DadX | 0.37 | IAI47_02315 | | shikimate dehydrogenase | — | — |
| Dickeya dianthicola 67-19 | 0.39 | HGI48_RS17565 | | alanine racemase | 0.36 | HGI48_RS19190 | | shikimate dehydrogenase | — | — |
| Pectobacterium carotovorum WPP14 | 0.39 | HER17_RS03655 | | alanine racemase | 0.35 | HER17_RS02250 | | shikimate dehydrogenase | low | > 75 |
| Dickeya dianthicola ME23 | 0.39 | DZA65_RS18650 | | alanine racemase | 0.36 | DZA65_RS20315 | | shikimate dehydrogenase | — | — |
| Ralstonia solanacearum GMI1000 | 0.39 | RS_RS06875 | | alanine racemase | 0.35 | RS_RS13890 | | shikimate dehydrogenase | — | — |
| Rahnella sp. WP5 | 0.39 | EX31_RS11885 | | alanine racemase | 0.37 | EX31_RS15950 | | shikimate dehydrogenase | — | — |
| Serratia liquefaciens MT49 | 0.38 | IAI46_22945 | | alanine racemase | 0.39 | IAI46_23240 | | shikimate dehydrogenase | low | > 86 |
| Ralstonia sp. UNC404CL21Col | 0.38 | ABZR87_RS11665 | | alanine racemase | 0.36 | ABZR87_RS01605 | | shikimate dehydrogenase | — | — |
| Shewanella amazonensis SB2B | 0.38 | Sama_3057 | alr | alanine racemase (RefSeq) | 0.36 | Sama_0052 | | shikimate dehydrogenase (RefSeq) | — | — |
| Shewanella oneidensis MR-1 | 0.38 | SO3916 | alr | alanine racemase, biosynthetic (NCBI ptt file) | 0.40 | SO0040 | aroE | shikimate 5-dehydrogenase (NCBI ptt file) | — | — |
| Ralstonia solanacearum PSI07 | 0.38 | RPSI07_RS17275 | | alanine racemase | 0.36 | RPSI07_RS11300 | | shikimate dehydrogenase | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.37 | RALBFv3_RS00205 | | alanine racemase | 0.36 | RALBFv3_RS05945 | | shikimate dehydrogenase | — | — |
| Shewanella sp. ANA-3 | 0.37 | Shewana3_0714 | alr | alanine racemase (RefSeq) | 0.38 | Shewana3_0043 | aroE | shikimate 5-dehydrogenase (RefSeq) | — | — |
| Ralstonia solanacearum UW163 | 0.37 | UW163_RS13535 | | alanine racemase | 0.36 | UW163_RS07680 | | shikimate dehydrogenase | — | — |
| Dechlorosoma suillum PS | 0.37 | Dsui_2411 | | alanine racemase | 0.38 | Dsui_0443 | | shikimate 5-dehydrogenase | — | — |
| Shewanella loihica PV-4 | 0.37 | Shew_3277 | alr | alanine racemase (RefSeq) | 0.38 | Shew_3727 | | shikimate 5-dehydrogenase (RefSeq) | — | — |
| Paraburkholderia graminis OAS925 | 0.37 | ABIE53_002527 | | alanine racemase | 0.35 | ABIE53_003560 | | shikimate dehydrogenase | — | — |
| Alteromonas macleodii MIT1002 | 0.37 | MIT1002_00544 | | Alanine racemase | 0.26 | MIT1002_00029 | | Shikimate dehydrogenase | — | — |
| Paraburkholderia bryophila 376MFSha3.1 | 0.37 | H281DRAFT_00589 | | alanine racemase | 0.36 | H281DRAFT_06291 | | shikimate dehydrogenase (EC 1.1.1.25) | — | — |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.37 | GFF1915 | | Alanine racemase (EC 5.1.1.1) | 0.34 | GFF5226 | | Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) | — | — |
| Variovorax sp. SCN45 | 0.36 | GFF5109 | | Alanine racemase (EC 5.1.1.1) | 0.25 | GFF4456 | | Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) | — | — |
| Paraburkholderia sabiae LMG 24235 | 0.36 | QEN71_RS06315 | | alanine racemase | 0.36 | QEN71_RS27130 | | shikimate dehydrogenase | — | — |
| Burkholderia phytofirmans PsJN | 0.35 | BPHYT_RS12240 | | alanine racemase | 0.34 | BPHYT_RS16975 | | shikimate 5-dehydrogenase | — | — |
| Variovorax sp. OAS795 | 0.35 | ABID97_RS03685 | | alanine racemase | 0.25 | ABID97_RS06300 | | shikimate dehydrogenase | — | — |
| Acidovorax sp. GW101-3H11 | 0.35 | Ac3H11_3382 | | Alanine racemase, catabolic (EC 5.1.1.1) | 0.29 | Ac3H11_4044 | | Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) | — | — |
| Cupriavidus basilensis FW507-4G11 | 0.35 | RR42_RS12035 | | alanine racemase | 0.30 | RR42_RS17645 | | shikimate dehydrogenase | — | — |
| Castellaniella sp019104865 MT123 | 0.33 | ABCV34_RS06375 | | alanine racemase | 0.35 | ABCV34_RS11620 | | shikimate dehydrogenase | low | > 48 |
| Marinobacter adhaerens HP15 | 0.33 | HP15_630 | | alanine racemase | 0.34 | HP15_3750 | | shikimate dehydrogenase | — | — |
| Acinetobacter radioresistens SK82 | 0.31 | MPMX26_01153 | | Alanine racemase | 0.36 | MPMX26_02748 | | Shikimate dehydrogenase (NADP(+)) | — | — |
| Dyella japonica UNC79MFTsu3.2 | 0.31 | ABZR86_RS08850 | | alanine racemase | 0.51 | ABZR86_RS14985 | | shikimate dehydrogenase | — | — |
| Lysobacter sp. OAE881 | 0.25 | ABIE51_RS09255 | | alanine racemase | 0.57 | ABIE51_RS01815 | | shikimate dehydrogenase | — | — |
| Synechococcus elongatus PCC 7942 | 0.25 | Synpcc7942_2201 | alr | alanine racemase | 0.20 | Synpcc7942_2467 | aroE | shikimate 5-dehydrogenase | — | — |
| Methanococcus maripaludis JJ | 0.25 | MMJJ_RS06585 | | alanine racemase | 0.19 | MMJJ_RS00280 | | shikimate dehydrogenase | — | — |
| Methanococcus maripaludis S2 | 0.25 | MMP_RS07770 | | alanine racemase | 0.20 | MMP_RS04855 | | shikimate dehydrogenase | — | — |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.23 | A4249_RS03755 | | alanine racemase | 0.18 | A4249_RS13660 | | shikimate dehydrogenase | — | — |
| Caulobacter crescentus NA1000 | 0.23 | CCNA_01733 | | alanine racemase | 0.19 | CCNA_00003 | | shikimate dehydrogenase (EC 1.1.1.25) (from data) | low | > 66 |
| Desulfovibrio vulgaris Hildenborough JW710 | 0.23 | DVU0955 | alr | alanine racemase (TIGR) | 0.23 | DVU0115 | aroE | shikimate 5-dehydrogenase (TIGR) | — | — |
| Caulobacter crescentus NA1000 Δfur | 0.23 | CCNA_01733 | | alanine racemase | 0.19 | CCNA_00003 | | shikimate 5-dehydrogenase | low | > 67 |
| Desulfovibrio vulgaris Miyazaki F | 0.22 | DvMF_1349 | | alanine racemase (RefSeq) | 0.19 | DvMF_1962 | | shikimate 5-dehydrogenase (RefSeq) | — | — |
| Azospirillum sp. SherDot2 | 0.22 | MPMX19_06140 | | Alanine racemase, biosynthetic | 0.22 | MPMX19_02560 | | Shikimate dehydrogenase (NADP(+)) | — | — |
| Bosea sp. OAE506 | 0.21 | ABIE41_RS17795 | | alanine racemase | 0.24 | ABIE41_RS04650 | | shikimate dehydrogenase | — | — |
| Rhodopseudomonas palustris CGA009 | 0.21 | TX73_015960 | | alanine racemase | 0.22 | TX73_022410 | | shikimate dehydrogenase | — | — |
| Agrobacterium fabrum C58 | 0.21 | Atu3292 | | alanine racemase | 0.24 | Atu0003 | | shikimate 5-dehydrogenase | — | — |
| Azospirillum brasilense Sp245 | 0.20 | AZOBR_RS08350 | | alanine racemase | 0.17 | AZOBR_RS01765 | | shikimate 5-dehydrogenase | — | — |
| Rhodospirillum rubrum S1H | 0.20 | Rru_A0409 | | Alanine racemase region (NCBI) | 0.22 | Rru_A3613 | | Quinate/Shikimate 5-dehydrogenase (NCBI) | — | — |
| Phaeobacter inhibens DSM 17395 | 0.19 | PGA1_c10880 | | alanine racemase, biosynthetic | 0.26 | PGA1_c35150 | | shikimate dehydrogenase AroE | — | — |
| Magnetospirillum magneticum AMB-1 | 0.19 | AMB_RS10575 | | alanine racemase | 0.19 | AMB_RS23010 | | shikimate dehydrogenase | — | — |
| Dinoroseobacter shibae DFL-12 | 0.19 | Dshi_2378 | | alanine racemase (RefSeq) | 0.24 | Dshi_3450 | | shikimate 5-dehydrogenase (RefSeq) | — | — |
| Sinorhizobium meliloti 1021 | 0.18 | SMc00557 | | alanine racemase | 0.23 | SMc02791 | | shikimate 5-dehydrogenase | — | — |
| Rhizobium sp. OAE497 | 0.18 | ABIE40_RS06295 | | alanine racemase | 0.22 | ABIE40_RS19250 | | shikimate dehydrogenase | — | — |
| Sphingomonas koreensis DSMZ 15582 | 0.17 | Ga0059261_0986 | | alanine racemase | 0.17 | Ga0059261_2194 | | shikimate dehydrogenase (EC 1.1.1.25) (from data) | — | — |
| Fusobacterium nucleatum SB010 | 0.16 | HUW76_08815 | | alanine racemase | 0.18 | HUW76_10445 | | shikimate dehydrogenase | low | > 35 |
Not shown: 1 genomes with orthologs for Xcc-8004.4620.1 only; 3 genomes with orthologs for Xcc-8004.5020.1 only