Conservation of cofitness between Xcc-8004.5020.1 and Xcc-8004.2948.1 in Xanthomonas campestris pv. campestris strain 8004

92 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Xanthomonas campestris pv. campestris strain 8004 1.0 Xcc-8004.5020.1 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 1.0 Xcc-8004.2948.1 Histidinol dehydrogenase (EC 1.1.1.23) 0.84 20
Lysobacter sp. OAE881 0.57 ABIE51_RS01815 shikimate dehydrogenase 0.64 ABIE51_RS13325 histidinol dehydrogenase 0.70 23
Dyella japonica UNC79MFTsu3.2 0.51 ABZR86_RS14985 shikimate dehydrogenase 0.58 ABZR86_RS06730 histidinol dehydrogenase 0.97 17
Rhodanobacter denitrificans FW104-10B01 0.49 LRK54_RS08595 shikimate dehydrogenase 0.58 LRK54_RS01605 histidinol dehydrogenase low > 59
Rhodanobacter denitrificans MT42 0.49 LRK55_RS08360 shikimate dehydrogenase 0.58 LRK55_RS01385 histidinol dehydrogenase low > 63
Rhodanobacter sp. FW510-T8 0.46 OKGIIK_15365 aroE shikimate dehydrogenase 0.58 OKGIIK_04950 hisD histidinol dehydrogenase low > 52
Shewanella oneidensis MR-1 0.40 SO0040 aroE shikimate 5-dehydrogenase (NCBI ptt file) 0.48 SO2073 hisD histidinol dehydrogenase (NCBI ptt file) 0.87 38
Pseudomonas fluorescens SBW25 0.39 PFLU_RS00120 shikimate dehydrogenase 0.36 PFLU_RS04470 histidinol dehydrogenase — —
Pseudomonas fluorescens SBW25-INTG 0.39 PFLU_RS00120 shikimate dehydrogenase 0.36 PFLU_RS04470 histidinol dehydrogenase — —
Pseudomonas simiae WCS417 0.39 PS417_00125 shikimate dehydrogenase 0.36 PS417_04420 histidinol dehydrogenase — —
Pseudomonas sp. RS175 0.39 PFR28_04655 Shikimate dehydrogenase (NADP(+)) 0.37 PFR28_00187 Histidinol dehydrogenase — —
Serratia liquefaciens MT49 0.39 IAI46_23240 shikimate dehydrogenase 0.50 IAI46_08210 histidinol dehydrogenase low > 86
Vibrio cholerae E7946 ATCC 55056 0.38 CSW01_00280 shikimate dehydrogenase 0.50 CSW01_05750 histidinol dehydrogenase low > 62
Pseudomonas fluorescens FW300-N2E3 0.38 AO353_10670 shikimate dehydrogenase 0.37 AO353_05110 histidinol dehydrogenase 0.66 45
Shewanella sp. ANA-3 0.38 Shewana3_0043 aroE shikimate 5-dehydrogenase (RefSeq) 0.48 Shewana3_1853 hisD histidinol dehydrogenase (RefSeq) 0.93 18
Pseudomonas fluorescens FW300-N2C3 0.38 AO356_11315 shikimate dehydrogenase 0.37 AO356_06965 histidinol dehydrogenase 0.57 6
Shewanella loihica PV-4 0.38 Shew_3727 shikimate 5-dehydrogenase (RefSeq) 0.51 Shew_2198 histidinol dehydrogenase (RefSeq) low > 60
Dechlorosoma suillum PS 0.38 Dsui_0443 shikimate 5-dehydrogenase 0.36 Dsui_1411 histidinol dehydrogenase — —
Pseudomonas fluorescens FW300-N1B4 0.38 Pf1N1B4_1906 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.37 Pf1N1B4_1066 Histidinol dehydrogenase (EC 1.1.1.23) — —
Pseudomonas fluorescens GW456-L13 0.38 PfGW456L13_644 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.36 PfGW456L13_5000 Histidinol dehydrogenase (EC 1.1.1.23) 0.75 39
Pseudomonas fluorescens FW300-N2E2 0.38 Pf6N2E2_4130 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.37 Pf6N2E2_3252 Histidinol dehydrogenase (EC 1.1.1.23) — —
Rahnella sp. WP5 0.37 EX31_RS15950 shikimate dehydrogenase 0.50 EX31_RS11440 histidinol dehydrogenase — —
Pseudomonas syringae pv. syringae B728a 0.37 Psyr_0025 shikimate dehydrogenase 0.37 Psyr_4133 histidinol dehydrogenase 0.50 55
Pseudomonas syringae pv. syringae B728a ΔmexB 0.37 Psyr_0025 shikimate dehydrogenase 0.37 Psyr_4133 histidinol dehydrogenase 0.66 11
Herbaspirillum seropedicae SmR1 0.37 HSERO_RS01990 shikimate 5-dehydrogenase 0.35 HSERO_RS20345 histidinol dehydrogenase 0.73 20
Pseudomonas sp. S08-1 0.37 OH686_12485 Shikimate 5-dehydrogenase I alpha 0.37 OH686_08470 Histidinol dehydrogenase 0.72 65
Pseudomonas putida KT2440 0.37 PP_0074 shikimate 5-dehydrogenase 0.38 PP_0966 Histidinol dehydrogenase — —
Pantoea sp. MT58 0.37 IAI47_02315 shikimate dehydrogenase 0.50 IAI47_07090 histidinol dehydrogenase — —
Dickeya dadantii 3937 0.36 DDA3937_RS19100 shikimate dehydrogenase 0.52 DDA3937_RS09735 histidinol dehydrogenase — —
Ralstonia solanacearum PSI07 0.36 RPSI07_RS11300 shikimate dehydrogenase 0.34 RPSI07_RS10390 histidinol dehydrogenase — —
Klebsiella michiganensis M5al 0.36 BWI76_RS25645 shikimate dehydrogenase 0.51 BWI76_RS18925 histidinol dehydrogenase 0.74 50
Shewanella amazonensis SB2B 0.36 Sama_0052 shikimate dehydrogenase (RefSeq) 0.49 Sama_1942 hisD histidinol dehydrogenase (RefSeq) 0.70 36
Escherichia coli HS(pFamp)R (ATCC 700891) 0.36 OHPLBJKB_00422 Shikimate dehydrogenase (NADP(+)) 0.50 OHPLBJKB_01680 Histidinol dehydrogenase low > 73
Escherichia coli BW25113 0.36 b3281 aroE dehydroshikimate reductase, NAD(P)-binding (NCBI) 0.51 b2020 hisD histidinol dehydrogenase (NCBI) 0.93 13
Dickeya dianthicola 67-19 0.36 HGI48_RS19190 shikimate dehydrogenase 0.51 HGI48_RS09745 histidinol dehydrogenase — —
Paraburkholderia sabiae LMG 24235 0.36 QEN71_RS27130 shikimate dehydrogenase 0.34 QEN71_RS27865 histidinol dehydrogenase 0.68 51
Escherichia coli BL21 0.36 ECD_03132 dehydroshikimate reductase, NAD(P)-binding 0.51 ECD_01922 bifunctional histidinal dehydrogenase/ histidinol dehydrogenase 0.55 49
Paraburkholderia bryophila 376MFSha3.1 0.36 H281DRAFT_06291 shikimate dehydrogenase (EC 1.1.1.25) 0.34 H281DRAFT_05652 histidinol dehydrogenase — —
Escherichia fergusonii Becca 0.36 EFB2_00542 Shikimate dehydrogenase (NADP(+)) 0.51 EFB2_01836 Histidinol dehydrogenase low > 86
Escherichia coli ECOR38 0.36 HEPCGN_16385 aroE shikimate dehydrogenase 0.51 HEPCGN_03220 hisD Histidinol dehydrogenase 0.76 70
Escherichia coli ECRC101 0.36 MCAODC_08085 aroE shikimate dehydrogenase 0.51 MCAODC_20425 hisD Histidinol dehydrogenase 0.84 23
Acinetobacter radioresistens SK82 0.36 MPMX26_02748 Shikimate dehydrogenase (NADP(+)) 0.36 MPMX26_02587 Histidinol dehydrogenase low > 36
Ralstonia solanacearum UW163 0.36 UW163_RS07680 shikimate dehydrogenase 0.34 UW163_RS06770 histidinol dehydrogenase — —
Ralstonia sp. UNC404CL21Col 0.36 ABZR87_RS01605 shikimate dehydrogenase 0.34 ABZR87_RS02500 histidinol dehydrogenase — —
Escherichia coli ECRC99 0.36 KEDOAH_10585 aroE shikimate dehydrogenase 0.51 KEDOAH_03635 hisD Histidinol dehydrogenase — —
Escherichia coli ECRC100 0.36 OKFHMN_17565 aroE shikimate dehydrogenase 0.51 OKFHMN_24515 hisD Histidinol dehydrogenase 0.89 68
Escherichia coli ECRC102 0.36 NIAGMN_15325 aroE shikimate dehydrogenase 0.51 NIAGMN_22460 hisD Histidinol dehydrogenase — —
Escherichia coli Nissle 1917 0.36 ECOLIN_RS18840 shikimate dehydrogenase 0.51 ECOLIN_RS11945 histidinol dehydrogenase — —
Dickeya dianthicola ME23 0.36 DZA65_RS20315 shikimate dehydrogenase 0.50 DZA65_RS10055 histidinol dehydrogenase — —
Escherichia coli ECRC98 0.36 JDDGAC_21185 aroE shikimate dehydrogenase 0.51 JDDGAC_28625 hisD Histidinol dehydrogenase 0.81 39
Ralstonia solanacearum IBSBF1503 0.36 RALBFv3_RS05945 shikimate dehydrogenase 0.34 RALBFv3_RS06845 histidinol dehydrogenase — —
Ralstonia solanacearum GMI1000 0.35 RS_RS13890 shikimate dehydrogenase 0.33 RS_RS14790 histidinol dehydrogenase — —
Enterobacter asburiae PDN3 0.35 EX28DRAFT_0046 shikimate dehydrogenase 0.49 EX28DRAFT_0539 histidinol dehydrogenase low > 76
Castellaniella sp019104865 MT123 0.35 ABCV34_RS11620 shikimate dehydrogenase 0.32 ABCV34_RS11230 histidinol dehydrogenase low > 48
Escherichia coli ECRC62 0.35 BNILDI_02165 aroE shikimate dehydrogenase 0.51 BNILDI_14740 hisD Histidinol dehydrogenase 0.90 59
Escherichia coli ECOR27 0.35 NOLOHH_09355 aroE shikimate dehydrogenase 0.51 NOLOHH_15830 hisD Histidinol dehydrogenase 0.83 58
Pectobacterium carotovorum WPP14 0.35 HER17_RS02250 shikimate dehydrogenase 0.53 HER17_RS12230 histidinol dehydrogenase 0.93 25
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.35 GFF2397 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.50 GFF3912 Histidinol dehydrogenase (EC 1.1.1.23) low > 78
Pseudomonas stutzeri RCH2 0.35 Psest_0029 shikimate 5-dehydrogenase 0.38 Psest_3298 histidinol dehydrogenase — —
Enterobacter sp. TBS_079 0.35 MPMX20_04189 Shikimate dehydrogenase (NADP(+)) 0.49 MPMX20_03002 Histidinol dehydrogenase 0.87 29
Paraburkholderia graminis OAS925 0.35 ABIE53_003560 shikimate dehydrogenase 0.34 ABIE53_003701 histidinol dehydrogenase — —
Burkholderia phytofirmans PsJN 0.34 BPHYT_RS16975 shikimate 5-dehydrogenase 0.35 BPHYT_RS17710 histidinol dehydrogenase — —
Erwinia tracheiphila SCR3 0.34 LU632_RS22445 aroE shikimate dehydrogenase 0.47 LU632_RS08945 hisD histidinol dehydrogenase low > 74
Marinobacter adhaerens HP15 0.34 HP15_3750 shikimate dehydrogenase 0.38 HP15_2428 histidinol dehydrogenase — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.34 GFF5226 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.36 GFF1314 Histidinol dehydrogenase (EC 1.1.1.23) — —
Kangiella aquimarina DSM 16071 0.30 B158DRAFT_0259 shikimate 5-dehydrogenase 0.27 B158DRAFT_2293 histidinol dehydrogenase low > 40
Cupriavidus basilensis FW507-4G11 0.30 RR42_RS17645 shikimate dehydrogenase 0.37 RR42_RS18915 histidinol dehydrogenase — —
Acidovorax sp. GW101-3H11 0.29 Ac3H11_4044 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.36 Ac3H11_4724 Histidinol dehydrogenase (EC 1.1.1.23) — —
Phaeobacter inhibens DSM 17395 0.26 PGA1_c35150 shikimate dehydrogenase AroE 0.34 PGA1_c31190 histidinol dehydrogenase HisD — —
Alteromonas macleodii MIT1002 0.26 MIT1002_00029 Shikimate dehydrogenase 0.49 MIT1002_02633 Histidinol dehydrogenase — —
Variovorax sp. OAS795 0.25 ABID97_RS06300 shikimate dehydrogenase 0.37 ABID97_RS23160 histidinol dehydrogenase — —
Variovorax sp. SCN45 0.25 GFF4456 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.36 GFF5345 Histidinol dehydrogenase (EC 1.1.1.23) — —
Agrobacterium fabrum C58 0.24 Atu0003 shikimate 5-dehydrogenase 0.34 Atu0537 histidinol dehydrogenase — —
Bosea sp. OAE506 0.24 ABIE41_RS04650 shikimate dehydrogenase 0.31 ABIE41_RS24015 histidinol dehydrogenase — —
Dinoroseobacter shibae DFL-12 0.24 Dshi_3450 shikimate 5-dehydrogenase (RefSeq) 0.34 Dshi_0979 Histidinol dehydrogenase (RefSeq) — —
Sinorhizobium meliloti 1021 0.23 SMc02791 shikimate 5-dehydrogenase 0.36 SMc02307 histidinol dehydrogenase — —
Desulfovibrio vulgaris Hildenborough JW710 0.23 DVU0115 aroE shikimate 5-dehydrogenase (TIGR) 0.33 DVU0796 hisD histidinol dehydrogenase (TIGR) — —
Rhodopseudomonas palustris CGA009 0.22 TX73_022410 shikimate dehydrogenase 0.34 TX73_023540 histidinol dehydrogenase — —
Azospirillum sp. SherDot2 0.22 MPMX19_02560 Shikimate dehydrogenase (NADP(+)) 0.33 MPMX19_05543 Histidinol dehydrogenase — —
Rhizobium sp. OAE497 0.22 ABIE40_RS19250 shikimate dehydrogenase 0.35 ABIE40_RS02725 histidinol dehydrogenase — —
Rhodospirillum rubrum S1H 0.22 Rru_A3613 Quinate/Shikimate 5-dehydrogenase (NCBI) 0.33 Rru_A2771 Histidinol dehydrogenase (NCBI) — —
Synechococcus elongatus PCC 7942 0.20 Synpcc7942_2467 aroE shikimate 5-dehydrogenase 0.37 Synpcc7942_1519 hisD histidinol dehydrogenase — —
Methanococcus maripaludis S2 0.20 MMP_RS04855 shikimate dehydrogenase 0.37 MMP_RS05015 histidinol dehydrogenase — —
Magnetospirillum magneticum AMB-1 0.19 AMB_RS23010 shikimate dehydrogenase 0.34 AMB_RS16905 histidinol dehydrogenase — —
Methanococcus maripaludis JJ 0.19 MMJJ_RS00280 shikimate dehydrogenase 0.38 MMJJ_RS00120 histidinol dehydrogenase — —
Desulfovibrio vulgaris Miyazaki F 0.19 DvMF_1962 shikimate 5-dehydrogenase (RefSeq) 0.33 DvMF_2814 hisD histidinol dehydrogenase (RefSeq) — —
Caulobacter crescentus NA1000 Δfur 0.19 CCNA_00003 shikimate 5-dehydrogenase 0.29 CCNA_02431 histidinol dehydrogenase low > 67
Caulobacter crescentus NA1000 0.19 CCNA_00003 shikimate dehydrogenase (EC 1.1.1.25) (from data) 0.29 CCNA_02431 histidinol dehydrogenase 0.89 31
Brevundimonas sp. GW460-12-10-14-LB2 0.18 A4249_RS13660 shikimate dehydrogenase 0.39 A4249_RS10695 histidinol dehydrogenase — —
Sphingomonas koreensis DSMZ 15582 0.17 Ga0059261_2194 shikimate dehydrogenase (EC 1.1.1.25) (from data) 0.36 Ga0059261_1281 histidinol dehydrogenase 0.91 36
Echinicola vietnamensis KMM 6221, DSM 17526 0.13 Echvi_1145 Shikimate 5-dehydrogenase 0.46 Echvi_2459 histidinol dehydrogenase — —
Bacteroides ovatus ATCC 8483 0.12 BACOVA_05065 putative shikimate dehydrogenase 0.47 BACOVA_01234 histidinol dehydrogenase — —
Mycobacterium tuberculosis H37Rv 0.12 Rv2552c Probable shikimate 5-dehydrogenase AroE (5-dehydroshikimate reductase) 0.25 Rv1599 Probable histidinol dehydrogenase HisD (HDH) — —

Not shown: 2 genomes with orthologs for Xcc-8004.5020.1 only; 9 genomes with orthologs for Xcc-8004.2948.1 only