Conservation of cofitness between Xcc-8004.5020.1 and Xcc-8004.1955.1 in Xanthomonas campestris pv. campestris strain 8004

93 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Xanthomonas campestris pv. campestris strain 8004 1.0 Xcc-8004.5020.1 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 1.0 Xcc-8004.1955.1 Chorismate synthase (EC 4.2.3.5) 0.85 17
Lysobacter sp. OAE881 0.57 ABIE51_RS01815 shikimate dehydrogenase 0.81 ABIE51_RS08220 chorismate synthase — —
Dyella japonica UNC79MFTsu3.2 0.51 ABZR86_RS14985 shikimate dehydrogenase 0.82 ABZR86_RS08040 chorismate synthase 0.92 58
Rhodanobacter denitrificans FW104-10B01 0.49 LRK54_RS08595 shikimate dehydrogenase 0.77 LRK54_RS01725 chorismate synthase — —
Rhodanobacter denitrificans MT42 0.49 LRK55_RS08360 shikimate dehydrogenase 0.77 LRK55_RS01505 chorismate synthase low > 63
Rhodanobacter sp. FW510-T8 0.46 OKGIIK_15365 aroE shikimate dehydrogenase 0.78 OKGIIK_04805 aroC chorismate synthase low > 52
Pseudomonas fluorescens SBW25 0.39 PFLU_RS00120 shikimate dehydrogenase 0.62 PFLU_RS21280 chorismate synthase — —
Pseudomonas fluorescens SBW25-INTG 0.39 PFLU_RS00120 shikimate dehydrogenase 0.62 PFLU_RS21280 chorismate synthase — —
Pseudomonas simiae WCS417 0.39 PS417_00125 shikimate dehydrogenase 0.62 PS417_19315 chorismate synthase — —
Pseudomonas sp. RS175 0.39 PFR28_04655 Shikimate dehydrogenase (NADP(+)) 0.62 PFR28_03126 Chorismate synthase — —
Serratia liquefaciens MT49 0.39 IAI46_23240 shikimate dehydrogenase 0.60 IAI46_18025 chorismate synthase 0.69 15
Pseudomonas fluorescens FW300-N2E3 0.38 AO353_10670 shikimate dehydrogenase 0.63 AO353_02250 chorismate synthase low > 101
Vibrio cholerae E7946 ATCC 55056 0.38 CSW01_00280 shikimate dehydrogenase 0.60 CSW01_10560 chorismate synthase low > 62
Shewanella loihica PV-4 0.38 Shew_3727 shikimate 5-dehydrogenase (RefSeq) 0.63 Shew_2416 chorismate synthase (RefSeq) 0.89 3
Shewanella sp. ANA-3 0.38 Shewana3_0043 aroE shikimate 5-dehydrogenase (RefSeq) 0.62 Shewana3_1469 chorismate synthase (RefSeq) 0.95 5
Pseudomonas fluorescens FW300-N2C3 0.38 AO356_11315 shikimate dehydrogenase 0.63 AO356_19540 chorismate synthase — —
Pseudomonas fluorescens FW300-N1B4 0.38 Pf1N1B4_1906 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.63 Pf1N1B4_3780 Chorismate synthase (EC 4.2.3.5) — —
Dechlorosoma suillum PS 0.38 Dsui_0443 shikimate 5-dehydrogenase 0.69 Dsui_3204 chorismate synthase — —
Pseudomonas fluorescens GW456-L13 0.38 PfGW456L13_644 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.63 PfGW456L13_4165 Chorismate synthase (EC 4.2.3.5) 0.73 47
Pseudomonas fluorescens FW300-N2E2 0.38 Pf6N2E2_4130 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.63 Pf6N2E2_5822 Chorismate synthase (EC 4.2.3.5) — —
Rahnella sp. WP5 0.37 EX31_RS15950 shikimate dehydrogenase 0.61 EX31_RS19685 chorismate synthase — —
Pseudomonas syringae pv. syringae B728a 0.37 Psyr_0025 shikimate dehydrogenase 0.63 Psyr_1853 chorismate synthase — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.37 Psyr_0025 shikimate dehydrogenase 0.63 Psyr_1853 chorismate synthase — —
Herbaspirillum seropedicae SmR1 0.37 HSERO_RS01990 shikimate 5-dehydrogenase 0.65 HSERO_RS16525 chorismate synthase — —
Pseudomonas sp. S08-1 0.37 OH686_12485 Shikimate 5-dehydrogenase I alpha 0.62 OH686_00675 chorismate synthase — —
Pseudomonas putida KT2440 0.37 PP_0074 shikimate 5-dehydrogenase 0.64 PP_1830 Chorismate synthase — —
Pantoea sp. MT58 0.37 IAI47_02315 shikimate dehydrogenase 0.60 IAI47_06150 chorismate synthase — —
Dickeya dadantii 3937 0.36 DDA3937_RS19100 shikimate dehydrogenase 0.61 DDA3937_RS14580 chorismate synthase — —
Shewanella amazonensis SB2B 0.36 Sama_0052 shikimate dehydrogenase (RefSeq) 0.65 Sama_2159 chorismate synthase (RefSeq) — —
Ralstonia solanacearum PSI07 0.36 RPSI07_RS11300 shikimate dehydrogenase 0.66 RPSI07_RS15640 chorismate synthase — —
Klebsiella michiganensis M5al 0.36 BWI76_RS25645 shikimate dehydrogenase 0.58 BWI76_RS20435 chorismate synthase 0.53 83
Dickeya dianthicola 67-19 0.36 HGI48_RS19190 shikimate dehydrogenase 0.62 HGI48_RS14530 chorismate synthase — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.36 OHPLBJKB_00422 Shikimate dehydrogenase (NADP(+)) 0.58 OHPLBJKB_01376 Chorismate synthase low > 73
Escherichia coli BW25113 0.36 b3281 aroE dehydroshikimate reductase, NAD(P)-binding (NCBI) 0.58 b2329 aroC chorismate synthase (NCBI) 0.94 9
Paraburkholderia sabiae LMG 24235 0.36 QEN71_RS27130 shikimate dehydrogenase 0.67 QEN71_RS05215 chorismate synthase 0.83 3
Escherichia coli BL21 0.36 ECD_03132 dehydroshikimate reductase, NAD(P)-binding 0.58 ECD_02254 chorismate synthase 0.71 3
Escherichia fergusonii Becca 0.36 EFB2_00542 Shikimate dehydrogenase (NADP(+)) 0.58 EFB2_01529 Chorismate synthase 0.65 50
Escherichia coli ECOR38 0.36 HEPCGN_16385 aroE shikimate dehydrogenase 0.58 HEPCGN_21820 aroC chorismate synthase 0.88 5
Paraburkholderia bryophila 376MFSha3.1 0.36 H281DRAFT_06291 shikimate dehydrogenase (EC 1.1.1.25) 0.65 H281DRAFT_04489 chorismate synthase — —
Escherichia coli ECRC98 0.36 JDDGAC_21185 aroE shikimate dehydrogenase 0.58 JDDGAC_26575 aroC chorismate synthase 0.75 69
Escherichia coli Nissle 1917 0.36 ECOLIN_RS18840 shikimate dehydrogenase 0.58 ECOLIN_RS13490 chorismate synthase — —
Ralstonia solanacearum IBSBF1503 0.36 RALBFv3_RS05945 shikimate dehydrogenase 0.66 RALBFv3_RS01850 chorismate synthase — —
Escherichia coli ECRC102 0.36 NIAGMN_15325 aroE shikimate dehydrogenase 0.58 NIAGMN_20390 aroC chorismate synthase — —
Ralstonia sp. UNC404CL21Col 0.36 ABZR87_RS01605 shikimate dehydrogenase 0.68 ABZR87_RS13790 chorismate synthase 0.55 41
Dickeya dianthicola ME23 0.36 DZA65_RS20315 shikimate dehydrogenase 0.62 DZA65_RS15465 chorismate synthase — —
Escherichia coli ECRC101 0.36 MCAODC_08085 aroE shikimate dehydrogenase 0.58 MCAODC_13655 aroC chorismate synthase 0.85 18
Acinetobacter radioresistens SK82 0.36 MPMX26_02748 Shikimate dehydrogenase (NADP(+)) 0.57 MPMX26_01340 Chorismate synthase — —
Ralstonia solanacearum UW163 0.36 UW163_RS07680 shikimate dehydrogenase 0.66 UW163_RS15160 chorismate synthase — —
Escherichia coli ECRC100 0.36 OKFHMN_17565 aroE shikimate dehydrogenase 0.58 OKFHMN_22615 aroC chorismate synthase 0.93 45
Escherichia coli ECRC99 0.36 KEDOAH_10585 aroE shikimate dehydrogenase 0.58 KEDOAH_05580 aroC chorismate synthase — —
Ralstonia solanacearum GMI1000 0.35 RS_RS13890 shikimate dehydrogenase 0.65 RS_RS07885 chorismate synthase 0.50 28
Enterobacter asburiae PDN3 0.35 EX28DRAFT_0046 shikimate dehydrogenase 0.60 EX28DRAFT_0275 chorismate synthase (EC 4.2.3.5) — —
Escherichia coli ECRC62 0.35 BNILDI_02165 aroE shikimate dehydrogenase 0.58 BNILDI_13170 aroC chorismate synthase low > 75
Pectobacterium carotovorum WPP14 0.35 HER17_RS02250 shikimate dehydrogenase 0.61 HER17_RS06935 chorismate synthase 0.89 50
Escherichia coli ECOR27 0.35 NOLOHH_09355 aroE shikimate dehydrogenase 0.58 NOLOHH_14250 aroC chorismate synthase 0.89 16
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.35 GFF2397 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.58 GFF1950 Chorismate synthase (EC 4.2.3.5) low > 78
Castellaniella sp019104865 MT123 0.35 ABCV34_RS11620 shikimate dehydrogenase 0.61 ABCV34_RS04300 chorismate synthase — —
Pseudomonas stutzeri RCH2 0.35 Psest_0029 shikimate 5-dehydrogenase 0.64 Psest_1903 chorismate synthase — —
Enterobacter sp. TBS_079 0.35 MPMX20_04189 Shikimate dehydrogenase (NADP(+)) 0.60 MPMX20_03264 Chorismate synthase 0.89 9
Paraburkholderia graminis OAS925 0.35 ABIE53_003560 shikimate dehydrogenase 0.66 ABIE53_002916 chorismate synthase — —
Burkholderia phytofirmans PsJN 0.34 BPHYT_RS16975 shikimate 5-dehydrogenase 0.66 BPHYT_RS13705 chorismate synthase 0.75 4
Erwinia tracheiphila SCR3 0.34 LU632_RS22445 aroE shikimate dehydrogenase 0.62 LU632_RS07775 aroC chorismate synthase 0.56 31
Marinobacter adhaerens HP15 0.34 HP15_3750 shikimate dehydrogenase 0.72 HP15_1838 chorismate synthase — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.34 GFF5226 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.63 GFF5239 Chorismate synthase (EC 4.2.3.5) 0.56 28
Cupriavidus basilensis FW507-4G11 0.30 RR42_RS17645 shikimate dehydrogenase 0.65 RR42_RS06485 chorismate synthase 0.87 3
Kangiella aquimarina DSM 16071 0.30 B158DRAFT_0259 shikimate 5-dehydrogenase 0.41 B158DRAFT_2433 chorismate synthase (EC 4.2.3.5) 0.82 3
Acidovorax sp. GW101-3H11 0.29 Ac3H11_4044 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.63 Ac3H11_2925 Chorismate synthase (EC 4.2.3.5) 0.91 13
Phaeobacter inhibens DSM 17395 0.26 PGA1_c35150 shikimate dehydrogenase AroE 0.52 PGA1_c34060 chorismate synthase AroC — —
Alteromonas macleodii MIT1002 0.26 MIT1002_00029 Shikimate dehydrogenase 0.65 MIT1002_01229 Chorismate synthase — —
Variovorax sp. OAS795 0.25 ABID97_RS06300 shikimate dehydrogenase 0.60 ABID97_RS19805 chorismate synthase — —
Variovorax sp. SCN45 0.25 GFF4456 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.60 GFF2627 Chorismate synthase (EC 4.2.3.5) low > 127
Agrobacterium fabrum C58 0.24 Atu0003 shikimate 5-dehydrogenase 0.48 Atu0754 chorismate synthase — —
Bosea sp. OAE506 0.24 ABIE41_RS04650 shikimate dehydrogenase 0.53 ABIE41_RS10190 chorismate synthase — —
Dinoroseobacter shibae DFL-12 0.24 Dshi_3450 shikimate 5-dehydrogenase (RefSeq) 0.50 Dshi_3275 Chorismate synthase (RefSeq) — —
Sinorhizobium meliloti 1021 0.23 SMc02791 shikimate 5-dehydrogenase 0.48 SMc00007 chorismate synthase — —
Desulfovibrio vulgaris Hildenborough JW710 0.23 DVU0115 aroE shikimate 5-dehydrogenase (TIGR) 0.41 DVU0894 aroC chorismate synthase (TIGR) — —
Azospirillum sp. SherDot2 0.22 MPMX19_02560 Shikimate dehydrogenase (NADP(+)) 0.53 MPMX19_01810 Chorismate synthase — —
Rhodopseudomonas palustris CGA009 0.22 TX73_022410 shikimate dehydrogenase 0.54 TX73_006170 chorismate synthase — —
Rhizobium sp. OAE497 0.22 ABIE40_RS19250 shikimate dehydrogenase 0.49 ABIE40_RS03980 chorismate synthase — —
Rhodospirillum rubrum S1H 0.22 Rru_A3613 Quinate/Shikimate 5-dehydrogenase (NCBI) 0.55 Rru_A2623 Chorismate synthase (NCBI) — —
Synechococcus elongatus PCC 7942 0.20 Synpcc7942_2467 aroE shikimate 5-dehydrogenase 0.42 Synpcc7942_0212 aroC chorismate synthase — —
Methanococcus maripaludis S2 0.20 MMP_RS04855 shikimate dehydrogenase 0.31 MMP_RS06880 chorismate synthase — —
Magnetospirillum magneticum AMB-1 0.19 AMB_RS23010 shikimate dehydrogenase 0.53 AMB_RS08025 chorismate synthase — —
Methanococcus maripaludis JJ 0.19 MMJJ_RS00280 shikimate dehydrogenase 0.32 MMJJ_RS07475 chorismate synthase — —
Desulfovibrio vulgaris Miyazaki F 0.19 DvMF_1962 shikimate 5-dehydrogenase (RefSeq) 0.40 DvMF_1408 chorismate synthase (RefSeq) — —
Caulobacter crescentus NA1000 0.19 CCNA_00003 shikimate dehydrogenase (EC 1.1.1.25) (from data) 0.47 CCNA_03256 chorismate synthase low > 66
Caulobacter crescentus NA1000 Δfur 0.19 CCNA_00003 shikimate 5-dehydrogenase 0.47 CCNA_03256 chorismate synthase low > 67
Brevundimonas sp. GW460-12-10-14-LB2 0.18 A4249_RS13660 shikimate dehydrogenase 0.49 A4249_RS08790 chorismate synthase — —
Fusobacterium nucleatum SB010 0.18 HUW76_10445 shikimate dehydrogenase 0.30 HUW76_05440 chorismate synthase low > 35
Azospirillum brasilense Sp245 0.17 AZOBR_RS01765 shikimate 5-dehydrogenase 0.54 AZOBR_RS10730 chorismate synthase — —
Sphingomonas koreensis DSMZ 15582 0.17 Ga0059261_2194 shikimate dehydrogenase (EC 1.1.1.25) (from data) 0.46 Ga0059261_2470 chorismate synthase (EC 4.2.3.5) — —
Echinicola vietnamensis KMM 6221, DSM 17526 0.13 Echvi_1145 Shikimate 5-dehydrogenase 0.42 Echvi_1518 chorismate synthase — —
Bacteroides ovatus ATCC 8483 0.12 BACOVA_05065 putative shikimate dehydrogenase 0.40 BACOVA_03296 chorismate synthase — —
Mycobacterium tuberculosis H37Rv 0.12 Rv2552c Probable shikimate 5-dehydrogenase AroE (5-dehydroshikimate reductase) 0.23 Rv2540c Probable chorismate synthase AroF (5-enolpyruvylshikimate-3-phosphate phospholyase) — —

Not shown: 1 genomes with orthologs for Xcc-8004.5020.1 only; 9 genomes with orthologs for Xcc-8004.1955.1 only