Conservation of cofitness between Xcc-8004.4620.1 and Xcc-8004.1955.1 in Xanthomonas campestris pv. campestris strain 8004

91 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Xanthomonas campestris pv. campestris strain 8004 1.0 Xcc-8004.4620.1 Alanine racemase (EC 5.1.1.1) 1.0 Xcc-8004.1955.1 Chorismate synthase (EC 4.2.3.5) 0.75 1
Rhodanobacter denitrificans MT42 0.67 LRK55_RS00355 alanine racemase 0.77 LRK55_RS01505 chorismate synthase — —
Rhodanobacter denitrificans FW104-10B01 0.67 LRK54_RS00585 alanine racemase 0.77 LRK54_RS01725 chorismate synthase — —
Rhodanobacter sp. FW510-T8 0.67 OKGIIK_06670 alr alanine racemase 0.78 OKGIIK_04805 aroC chorismate synthase — —
Pseudomonas sp. S08-1 0.65 OH686_13695 alanine racemase 0.62 OH686_00675 chorismate synthase — —
Pseudomonas putida KT2440 0.64 PP_5269 alanine racemase, PLP-binding 0.64 PP_1830 Chorismate synthase — —
Pseudomonas fluorescens SBW25 0.62 PFLU_RS29370 alanine racemase 0.62 PFLU_RS21280 chorismate synthase — —
Pseudomonas fluorescens SBW25-INTG 0.62 PFLU_RS29370 alanine racemase 0.62 PFLU_RS21280 chorismate synthase — —
Pseudomonas fluorescens GW456-L13 0.62 PfGW456L13_814 Alanine racemase (EC 5.1.1.1) 0.63 PfGW456L13_4165 Chorismate synthase (EC 4.2.3.5) — —
Pseudomonas simiae WCS417 0.62 PS417_27695 alanine racemase 0.62 PS417_19315 chorismate synthase — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.62 Psyr_0237 alanine racemase 0.63 Psyr_1853 chorismate synthase — —
Pseudomonas syringae pv. syringae B728a 0.62 Psyr_0237 alanine racemase 0.63 Psyr_1853 chorismate synthase — —
Pseudomonas fluorescens FW300-N1B4 0.62 Pf1N1B4_2146 Alanine racemase (EC 5.1.1.1) 0.63 Pf1N1B4_3780 Chorismate synthase (EC 4.2.3.5) — —
Pseudomonas fluorescens FW300-N2E3 0.62 AO353_09145 alanine racemase 0.63 AO353_02250 chorismate synthase — —
Pseudomonas fluorescens FW300-N2C3 0.62 AO356_12630 alanine racemase 0.63 AO356_19540 chorismate synthase — —
Pseudomonas sp. RS175 0.61 PFR28_04397 Alanine racemase 0.62 PFR28_03126 Chorismate synthase — —
Pseudomonas fluorescens FW300-N2E2 0.61 Pf6N2E2_4393 Alanine racemase (EC 5.1.1.1) 0.63 Pf6N2E2_5822 Chorismate synthase (EC 4.2.3.5) — —
Pseudomonas stutzeri RCH2 0.41 Psest_0699 alanine racemase 0.64 Psest_1903 chorismate synthase — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.40 GFF1422 Alanine racemase (EC 5.1.1.1) 0.58 GFF1950 Chorismate synthase (EC 4.2.3.5) low > 78
Klebsiella michiganensis M5al 0.40 BWI76_RS01920 alanine racemase 0.58 BWI76_RS20435 chorismate synthase low > 92
Kangiella aquimarina DSM 16071 0.40 B158DRAFT_2013 alanine racemase 0.41 B158DRAFT_2433 chorismate synthase (EC 4.2.3.5) low > 40
Escherichia coli Nissle 1917 0.40 ECOLIN_RS23405 alanine racemase 0.58 ECOLIN_RS13490 chorismate synthase — —
Escherichia coli ECRC62 0.40 BNILDI_06350 alr alanine racemase 0.58 BNILDI_13170 aroC chorismate synthase low > 75
Escherichia coli BW25113 0.40 b4053 alr alanine racemase (NCBI) 0.58 b2329 aroC chorismate synthase (NCBI) low > 76
Escherichia coli ECOR38 0.40 HEPCGN_11540 alr alanine racemase 0.58 HEPCGN_21820 aroC chorismate synthase low > 87
Escherichia coli BL21 0.40 ECD_03925 alanine racemase, biosynthetic, PLP-binding 0.58 ECD_02254 chorismate synthase low > 61
Escherichia coli ECOR27 0.40 NOLOHH_05175 alr alanine racemase 0.58 NOLOHH_14250 aroC chorismate synthase low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 0.40 OHPLBJKB_03990 Alanine racemase, biosynthetic 0.58 OHPLBJKB_01376 Chorismate synthase low > 73
Escherichia fergusonii Becca 0.40 EFB2_04547 Alanine racemase, biosynthetic 0.58 EFB2_01529 Chorismate synthase low > 86
Escherichia coli ECRC100 0.40 OKFHMN_12925 alr alanine racemase 0.58 OKFHMN_22615 aroC chorismate synthase low > 80
Escherichia coli ECRC101 0.40 MCAODC_03435 alr alanine racemase 0.58 MCAODC_13655 aroC chorismate synthase low > 87
Escherichia coli ECRC102 0.40 NIAGMN_10770 alr alanine racemase 0.58 NIAGMN_20390 aroC chorismate synthase — —
Escherichia coli ECRC98 0.40 JDDGAC_16560 alr alanine racemase 0.58 JDDGAC_26575 aroC chorismate synthase low > 86
Escherichia coli ECRC99 0.40 KEDOAH_15225 alr alanine racemase 0.58 KEDOAH_05580 aroC chorismate synthase — —
Enterobacter sp. TBS_079 0.40 MPMX20_02698 Alanine racemase, catabolic 0.60 MPMX20_03264 Chorismate synthase low > 85
Dickeya dadantii 3937 0.39 DDA3937_RS17510 alanine racemase 0.61 DDA3937_RS14580 chorismate synthase — —
Vibrio cholerae E7946 ATCC 55056 0.39 CSW01_01955 alanine racemase 0.60 CSW01_10560 chorismate synthase — —
Erwinia tracheiphila SCR3 0.39 LU632_RS13065 dadX catabolic alanine racemase DadX 0.62 LU632_RS07775 aroC chorismate synthase — —
Herbaspirillum seropedicae SmR1 0.39 HSERO_RS10740 alanine racemase 0.65 HSERO_RS16525 chorismate synthase — —
Enterobacter asburiae PDN3 0.39 EX28DRAFT_4259 alanine racemase 0.60 EX28DRAFT_0275 chorismate synthase (EC 4.2.3.5) — —
Pantoea sp. MT58 0.39 IAI47_08895 catabolic alanine racemase DadX 0.60 IAI47_06150 chorismate synthase — —
Dickeya dianthicola 67-19 0.39 HGI48_RS17565 alanine racemase 0.62 HGI48_RS14530 chorismate synthase — —
Dickeya dianthicola ME23 0.39 DZA65_RS18650 alanine racemase 0.62 DZA65_RS15465 chorismate synthase — —
Pectobacterium carotovorum WPP14 0.39 HER17_RS03655 alanine racemase 0.61 HER17_RS06935 chorismate synthase low > 75
Ralstonia solanacearum GMI1000 0.39 RS_RS06875 alanine racemase 0.65 RS_RS07885 chorismate synthase — —
Rahnella sp. WP5 0.39 EX31_RS11885 alanine racemase 0.61 EX31_RS19685 chorismate synthase — —
Serratia liquefaciens MT49 0.38 IAI46_22945 alanine racemase 0.60 IAI46_18025 chorismate synthase low > 86
Ralstonia sp. UNC404CL21Col 0.38 ABZR87_RS11665 alanine racemase 0.68 ABZR87_RS13790 chorismate synthase — —
Shewanella amazonensis SB2B 0.38 Sama_3057 alr alanine racemase (RefSeq) 0.65 Sama_2159 chorismate synthase (RefSeq) — —
Ralstonia solanacearum PSI07 0.38 RPSI07_RS17275 alanine racemase 0.66 RPSI07_RS15640 chorismate synthase — —
Ralstonia solanacearum UW163 0.37 UW163_RS13535 alanine racemase 0.66 UW163_RS15160 chorismate synthase — —
Ralstonia solanacearum IBSBF1503 0.37 RALBFv3_RS00205 alanine racemase 0.66 RALBFv3_RS01850 chorismate synthase — —
Shewanella sp. ANA-3 0.37 Shewana3_0714 alr alanine racemase (RefSeq) 0.62 Shewana3_1469 chorismate synthase (RefSeq) — —
Dechlorosoma suillum PS 0.37 Dsui_2411 alanine racemase 0.69 Dsui_3204 chorismate synthase — —
Shewanella loihica PV-4 0.37 Shew_3277 alr alanine racemase (RefSeq) 0.63 Shew_2416 chorismate synthase (RefSeq) — —
Paraburkholderia graminis OAS925 0.37 ABIE53_002527 alanine racemase 0.66 ABIE53_002916 chorismate synthase — —
Alteromonas macleodii MIT1002 0.37 MIT1002_00544 Alanine racemase 0.65 MIT1002_01229 Chorismate synthase — —
Paraburkholderia bryophila 376MFSha3.1 0.37 H281DRAFT_00589 alanine racemase 0.65 H281DRAFT_04489 chorismate synthase — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.37 GFF1915 Alanine racemase (EC 5.1.1.1) 0.63 GFF5239 Chorismate synthase (EC 4.2.3.5) — —
Variovorax sp. SCN45 0.36 GFF5109 Alanine racemase (EC 5.1.1.1) 0.60 GFF2627 Chorismate synthase (EC 4.2.3.5) — —
Paraburkholderia sabiae LMG 24235 0.36 QEN71_RS06315 alanine racemase 0.67 QEN71_RS05215 chorismate synthase — —
Variovorax sp. OAS795 0.35 ABID97_RS03685 alanine racemase 0.60 ABID97_RS19805 chorismate synthase — —
Burkholderia phytofirmans PsJN 0.35 BPHYT_RS12240 alanine racemase 0.66 BPHYT_RS13705 chorismate synthase — —
Cupriavidus basilensis FW507-4G11 0.35 RR42_RS12035 alanine racemase 0.65 RR42_RS06485 chorismate synthase — —
Acidovorax sp. GW101-3H11 0.35 Ac3H11_3382 Alanine racemase, catabolic (EC 5.1.1.1) 0.63 Ac3H11_2925 Chorismate synthase (EC 4.2.3.5) — —
Castellaniella sp019104865 MT123 0.33 ABCV34_RS06375 alanine racemase 0.61 ABCV34_RS04300 chorismate synthase — —
Marinobacter adhaerens HP15 0.33 HP15_630 alanine racemase 0.72 HP15_1838 chorismate synthase — —
Acinetobacter radioresistens SK82 0.31 MPMX26_01153 Alanine racemase 0.57 MPMX26_01340 Chorismate synthase — —
Dyella japonica UNC79MFTsu3.2 0.31 ABZR86_RS08850 alanine racemase 0.82 ABZR86_RS08040 chorismate synthase — —
Synechococcus elongatus PCC 7942 0.25 Synpcc7942_2201 alr alanine racemase 0.42 Synpcc7942_0212 aroC chorismate synthase — —
Lysobacter sp. OAE881 0.25 ABIE51_RS09255 alanine racemase 0.81 ABIE51_RS08220 chorismate synthase — —
Methanococcus maripaludis JJ 0.25 MMJJ_RS06585 alanine racemase 0.32 MMJJ_RS07475 chorismate synthase — —
Methanococcus maripaludis S2 0.25 MMP_RS07770 alanine racemase 0.31 MMP_RS06880 chorismate synthase — —
Brevundimonas sp. GW460-12-10-14-LB2 0.23 A4249_RS03755 alanine racemase 0.49 A4249_RS08790 chorismate synthase — —
Caulobacter crescentus NA1000 0.23 CCNA_01733 alanine racemase 0.47 CCNA_03256 chorismate synthase low > 66
Desulfovibrio vulgaris Hildenborough JW710 0.23 DVU0955 alr alanine racemase (TIGR) 0.41 DVU0894 aroC chorismate synthase (TIGR) — —
Caulobacter crescentus NA1000 Δfur 0.23 CCNA_01733 alanine racemase 0.47 CCNA_03256 chorismate synthase low > 67
Desulfovibrio vulgaris Miyazaki F 0.22 DvMF_1349 alanine racemase (RefSeq) 0.40 DvMF_1408 chorismate synthase (RefSeq) — —
Azospirillum sp. SherDot2 0.22 MPMX19_06140 Alanine racemase, biosynthetic 0.53 MPMX19_01810 Chorismate synthase — —
Bosea sp. OAE506 0.21 ABIE41_RS17795 alanine racemase 0.53 ABIE41_RS10190 chorismate synthase — —
Rhodopseudomonas palustris CGA009 0.21 TX73_015960 alanine racemase 0.54 TX73_006170 chorismate synthase — —
Agrobacterium fabrum C58 0.21 Atu3292 alanine racemase 0.48 Atu0754 chorismate synthase — —
Azospirillum brasilense Sp245 0.20 AZOBR_RS08350 alanine racemase 0.54 AZOBR_RS10730 chorismate synthase — —
Rhodospirillum rubrum S1H 0.20 Rru_A0409 Alanine racemase region (NCBI) 0.55 Rru_A2623 Chorismate synthase (NCBI) — —
Phaeobacter inhibens DSM 17395 0.19 PGA1_c10880 alanine racemase, biosynthetic 0.52 PGA1_c34060 chorismate synthase AroC — —
Magnetospirillum magneticum AMB-1 0.19 AMB_RS10575 alanine racemase 0.53 AMB_RS08025 chorismate synthase — —
Dinoroseobacter shibae DFL-12 0.19 Dshi_2378 alanine racemase (RefSeq) 0.50 Dshi_3275 Chorismate synthase (RefSeq) — —
Sinorhizobium meliloti 1021 0.18 SMc00557 alanine racemase 0.48 SMc00007 chorismate synthase — —
Rhizobium sp. OAE497 0.18 ABIE40_RS06295 alanine racemase 0.49 ABIE40_RS03980 chorismate synthase — —
Sphingomonas koreensis DSMZ 15582 0.17 Ga0059261_0986 alanine racemase 0.46 Ga0059261_2470 chorismate synthase (EC 4.2.3.5) — —
Fusobacterium nucleatum SB010 0.16 HUW76_08815 alanine racemase 0.30 HUW76_05440 chorismate synthase low > 35
Bifidobacterium breve UCC2003 0.14 BBR_RS13170 alanine racemase 0.23 BBR_RS15080 chorismate synthase — —

Not shown: 1 genomes with orthologs for Xcc-8004.4620.1 only; 11 genomes with orthologs for Xcc-8004.1955.1 only