Conservation of cofitness between Xcc-8004.1710.1 and Xcc-8004.1049.1 in Xanthomonas campestris pv. campestris strain 8004

96 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Xanthomonas campestris pv. campestris strain 8004 1.0 Xcc-8004.1710.1 Pyrroline-5-carboxylate reductase (EC 1.5.1.2) 1.0 Xcc-8004.1049.1 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) 0.64 11
Lysobacter sp. OAE881 0.59 ABIE51_RS16065 pyrroline-5-carboxylate reductase 0.46 ABIE51_RS17575 3-isopropylmalate dehydratase large subunit 0.82 52
Dyella japonica UNC79MFTsu3.2 0.49 ABZR86_RS10425 pyrroline-5-carboxylate reductase 0.47 ABZR86_RS15960 3-isopropylmalate dehydratase large subunit 0.88 45
Rhodanobacter sp. FW510-T8 0.47 OKGIIK_11135 proC pyrroline-5-carboxylate reductase 0.46 OKGIIK_13585 leuC 3-isopropylmalate dehydratase large subunit low > 52
Pseudomonas sp. S08-1 0.46 OH686_10980 pyrroline-5-carboxylate reductase 0.87 OH686_04480 3-isopropylmalate dehydratase large subunit 0.73 5
Rhodanobacter denitrificans FW104-10B01 0.45 LRK54_RS04260 pyrroline-5-carboxylate reductase 0.59 LRK54_RS07375 3-isopropylmalate dehydratase large subunit low > 59
Rhodanobacter denitrificans MT42 0.45 LRK55_RS04030 pyrroline-5-carboxylate reductase 0.59 LRK55_RS07105 3-isopropylmalate dehydratase large subunit
Pseudomonas stutzeri RCH2 0.44 Psest_0283 pyrroline-5-carboxylate reductase 0.88 Psest_2591 3-isopropylmalate dehydratase, large subunit
Pseudomonas putida KT2440 0.43 PP_5095 pyrroline-5-carboxylate reductase 0.82 PP_1985 3-isopropylmalate dehydratase large subunit 0.44 20
Pseudomonas fluorescens FW300-N2E2 0.43 Pf6N2E2_4600 Pyrroline-5-carboxylate reductase (EC 1.5.1.2) 0.83 Pf6N2E2_63 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)
Pseudomonas fluorescens FW300-N2C3 0.42 AO356_13420 pyrroline-5-carboxylate reductase 0.83 AO356_21400 isopropylmalate isomerase
Pseudomonas sp. RS175 0.41 PFR28_04243 Pyrroline-5-carboxylate reductase 0.83 PFR28_02824 3-isopropylmalate dehydratase large subunit
Pseudomonas syringae pv. syringae B728a 0.41 Psyr_0476 pyrroline-5-carboxylate reductase 0.81 Psyr_1983 3-isopropylmalate dehydratase, large subunit
Pseudomonas syringae pv. syringae B728a ΔmexB 0.41 Psyr_0476 pyrroline-5-carboxylate reductase 0.81 Psyr_1983 3-isopropylmalate dehydratase, large subunit 0.83 12
Pseudomonas fluorescens FW300-N1B4 0.41 Pf1N1B4_2341 Pyrroline-5-carboxylate reductase (EC 1.5.1.2) 0.83 Pf1N1B4_15 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)
Pseudomonas fluorescens FW300-N2E3 0.41 AO353_08165 pyrroline-5-carboxylate reductase 0.83 AO353_20620 isopropylmalate isomerase 0.66 23
Pseudomonas fluorescens SBW25-INTG 0.41 PFLU_RS28375 pyrroline-5-carboxylate reductase 0.83 PFLU_RS20580 3-isopropylmalate dehydratase large subunit
Pseudomonas fluorescens SBW25 0.41 PFLU_RS28375 pyrroline-5-carboxylate reductase 0.83 PFLU_RS20580 3-isopropylmalate dehydratase large subunit
Pseudomonas simiae WCS417 0.41 PS417_26730 pyrroline-5-carboxylate reductase 0.83 PS417_18600 isopropylmalate isomerase 0.53 33
Pseudomonas fluorescens GW456-L13 0.40 PfGW456L13_1010 Pyrroline-5-carboxylate reductase (EC 1.5.1.2) 0.83 PfGW456L13_3948 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) 0.94 6
Marinobacter adhaerens HP15 0.37 HP15_287 pyrroline-5-carboxylate reductase 0.76 HP15_1834 protein containing 3-isopropylmalate dehydratase, large subunit region domain 0.74 2
Dechlorosoma suillum PS 0.36 Dsui_0602 pyrroline-5-carboxylate reductase 0.65 Dsui_3201 3-isopropylmalate dehydratase, large subunit
Variovorax sp. OAS795 0.35 ABID97_RS01555 pyrroline-5-carboxylate reductase 0.67 ABID97_RS08465 3-isopropylmalate dehydratase large subunit
Paraburkholderia sabiae LMG 24235 0.35 QEN71_RS26600 pyrroline-5-carboxylate reductase 0.69 QEN71_RS17605 3-isopropylmalate dehydratase large subunit 0.86 41
Kangiella aquimarina DSM 16071 0.35 B158DRAFT_0197 pyrroline-5-carboxylate reductase 0.74 B158DRAFT_1319 3-isopropylmalate dehydratase, large subunit low > 40
Ralstonia sp. UNC404CL21Col 0.34 ABZR87_RS01230 pyrroline-5-carboxylate reductase 0.71 ABZR87_RS14540 3-isopropylmalate dehydratase large subunit
Acidovorax sp. GW101-3H11 0.34 Ac3H11_788 Pyrroline-5-carboxylate reductase (EC 1.5.1.2) 0.65 Ac3H11_1525 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)
Acinetobacter radioresistens SK82 0.34 MPMX26_00572 Pyrroline-5-carboxylate reductase 0.73 MPMX26_00345 3-isopropylmalate dehydratase large subunit low > 36
Ralstonia solanacearum GMI1000 0.34 RS_RS13440 pyrroline-5-carboxylate reductase 0.70 RS_RS10000 3-isopropylmalate dehydratase large subunit
Hydrogenophaga sp. GW460-11-11-14-LB1 0.33 GFF2806 Pyrroline-5-carboxylate reductase (EC 1.5.1.2) 0.66 GFF3363 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) low > 90
Variovorax sp. SCN45 0.33 GFF5553 Pyrroline-5-carboxylate reductase (EC 1.5.1.2) 0.66 GFF3890 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)
Paraburkholderia graminis OAS925 0.33 ABIE53_000840 pyrroline-5-carboxylate reductase 0.69 ABIE53_004801 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit 0.67 3
Ralstonia solanacearum IBSBF1503 0.33 RALBFv3_RS05580 pyrroline-5-carboxylate reductase 0.70 RALBFv3_RS02620 3-isopropylmalate dehydratase large subunit low > 76
Ralstonia solanacearum UW163 0.33 UW163_RS08045 pyrroline-5-carboxylate reductase 0.70 UW163_RS11105 3-isopropylmalate dehydratase large subunit
Paraburkholderia bryophila 376MFSha3.1 0.33 H281DRAFT_04679 pyrroline-5-carboxylate reductase 0.69 H281DRAFT_06075 3-isopropylmalate dehydratase, large subunit 0.56 27
Ralstonia solanacearum PSI07 0.33 RPSI07_RS11720 pyrroline-5-carboxylate reductase 0.70 RPSI07_RS14695 3-isopropylmalate dehydratase large subunit 0.59 54
Dickeya dadantii 3937 0.32 DDA3937_RS17305 pyrroline-5-carboxylate reductase 0.60 DDA3937_RS18125 3-isopropylmalate dehydratase large subunit low > 74
Burkholderia phytofirmans PsJN 0.32 BPHYT_RS03490 pyrroline-5-carboxylate reductase 0.69 BPHYT_RS33915 isopropylmalate isomerase
Serratia liquefaciens MT49 0.32 IAI46_21415 pyrroline-5-carboxylate reductase 0.59 IAI46_03345 3-isopropylmalate dehydratase large subunit 0.65 27
Shewanella sp. ANA-3 0.32 Shewana3_1193 pyrroline-5-carboxylate reductase (RefSeq) 0.57 Shewana3_3759 isopropylmalate isomerase large subunit (RefSeq) 0.94 13
Shewanella oneidensis MR-1 0.32 SO3354 proC pyrroline-5-carboxylate reductase (NCBI ptt file) 0.58 SO4234 leuC 3-isopropylmalate dehydratase, large subunit (NCBI ptt file) 0.97 15
Cupriavidus basilensis FW507-4G11 0.32 RR42_RS17360 pyrroline-5-carboxylate reductase 0.71 RR42_RS14400 isopropylmalate isomerase
Dickeya dianthicola ME23 0.32 DZA65_RS18440 pyrroline-5-carboxylate reductase 0.60 DZA65_RS19210 3-isopropylmalate dehydratase large subunit
Dickeya dianthicola 67-19 0.32 HGI48_RS17350 pyrroline-5-carboxylate reductase 0.60 HGI48_RS18065 3-isopropylmalate dehydratase large subunit
Shewanella loihica PV-4 0.30 Shew_3016 pyrroline-5-carboxylate reductase (RefSeq) 0.57 Shew_3470 isopropylmalate isomerase large subunit (RefSeq) low > 60
Rahnella sp. WP5 0.30 EX31_RS02690 pyrroline-5-carboxylate reductase 0.60 EX31_RS03690 3-isopropylmalate dehydratase large subunit 0.98 6
Herbaspirillum seropedicae SmR1 0.30 HSERO_RS18990 pyrroline-5-carboxylate reductase 0.69 HSERO_RS16515 isopropylmalate isomerase 0.80 11
Vibrio cholerae E7946 ATCC 55056 0.30 CSW01_02450 pyrroline-5-carboxylate reductase 0.57 CSW01_12605 3-isopropylmalate dehydratase large subunit low > 62
Pectobacterium carotovorum WPP14 0.30 HER17_RS03805 pyrroline-5-carboxylate reductase 0.59 HER17_RS03075 3-isopropylmalate dehydratase large subunit
Shewanella amazonensis SB2B 0.30 Sama_2478 pyrroline-5-carboxylate reductase (RefSeq) 0.57 Sama_0337 isopropylmalate isomerase large subunit (RefSeq) 0.93 34
Alteromonas macleodii MIT1002 0.30 MIT1002_03062 Pyrroline-5-carboxylate reductase 0.56 MIT1002_00947 3-isopropylmalate dehydratase large subunit 0.96 21
Castellaniella sp019104865 MT123 0.29 ABCV34_RS03610 pyrroline-5-carboxylate reductase 0.69 ABCV34_RS04290 3-isopropylmalate dehydratase large subunit low > 48
Magnetospirillum magneticum AMB-1 0.28 AMB_RS02820 pyrroline-5-carboxylate reductase 0.60 AMB_RS20560 3-isopropylmalate dehydratase large subunit
Azospirillum sp. SherDot2 0.28 MPMX19_01399 Pyrroline-5-carboxylate reductase 0.63 MPMX19_01998 3-isopropylmalate dehydratase large subunit
Rhodospirillum rubrum S1H 0.27 Rru_A3281 Delta 1-pyrroline-5-carboxylate reductase (NCBI) 0.65 Rru_A1189 3-isopropylmalate dehydratase large subunit region (NCBI)
Azospirillum brasilense Sp245 0.27 AZOBR_RS06245 pyrroline-5-carboxylate reductase 0.63 AZOBR_RS03545 isopropylmalate isomerase
Agrobacterium fabrum C58 0.27 Atu2209 pyrroline-5-carboxylate reductase 0.61 Atu2709 3-isopropylmalate dehydratase, large subunit 0.67 7
Phaeobacter inhibens DSM 17395 0.26 PGA1_c24700 pyrroline-5-carboxylate reductase ProC 0.58 PGA1_c29780 3-isopropylmalate dehydratase large subunit 0.82 15
Synechococcus elongatus PCC 7942 0.26 Synpcc7942_2058 proC pyrroline-5-carboxylate reductase 0.45 Synpcc7942_1898 leuC isopropylmalate isomerase large subunit
Rhodopseudomonas palustris CGA009 0.25 TX73_022630 pyrroline-5-carboxylate reductase 0.60 TX73_001245 3-isopropylmalate dehydratase large subunit
Rhizobium sp. OAE497 0.25 ABIE40_RS13005 pyrroline-5-carboxylate reductase 0.60 ABIE40_RS18380 3-isopropylmalate dehydratase large subunit 0.71 19
Escherichia fergusonii Becca 0.24 EFB2_03670 Pyrroline-5-carboxylate reductase 0.60 EFB2_03973 3-isopropylmalate dehydratase large subunit low > 86
Klebsiella michiganensis M5al 0.24 BWI76_RS06170 pyrroline-5-carboxylate reductase 0.59 BWI76_RS04670 3-isopropylmalate dehydratase large subunit
Escherichia coli ECRC99 0.24 KEDOAH_19355 proC pyrroline-5-carboxylate reductase 0.60 KEDOAH_17430 leuC1 3-isopropylmalate dehydratase large subunit 1
Escherichia coli Nissle 1917 0.24 ECOLIN_RS02345 pyrroline-5-carboxylate reductase 0.60 ECOLIN_RS00390 3-isopropylmalate dehydratase large subunit 0.89 10
Escherichia coli ECRC100 0.24 OKFHMN_08610 proC pyrroline-5-carboxylate reductase 0.60 OKFHMN_10725 leuC1 3-isopropylmalate dehydratase large subunit 1 0.86 34
Escherichia coli ECRC101 0.24 MCAODC_27835 proC pyrroline-5-carboxylate reductase 0.60 MCAODC_01240 leuC1 3-isopropylmalate dehydratase large subunit 1 0.84 19
Escherichia coli ECRC98 0.24 JDDGAC_12265 proC pyrroline-5-carboxylate reductase 0.60 JDDGAC_14320 leuC1 3-isopropylmalate dehydratase large subunit 1 0.67 78
Escherichia coli ECRC102 0.24 NIAGMN_06665 proC pyrroline-5-carboxylate reductase 0.60 NIAGMN_08575 leuC1 3-isopropylmalate dehydratase large subunit 1
Escherichia coli ECOR38 0.24 HEPCGN_07250 proC pyrroline-5-carboxylate reductase 0.60 HEPCGN_08705 leuC1 3-isopropylmalate dehydratase large subunit 1 0.84 34
Escherichia coli HS(pFamp)R (ATCC 700891) 0.24 OHPLBJKB_03288 Pyrroline-5-carboxylate reductase 0.60 OHPLBJKB_03585 3-isopropylmalate dehydratase large subunit low > 73
Escherichia coli BL21 0.24 ECD_00333 pyrroline-5-carboxylate reductase, NAD(P)-binding 0.60 ECD_00074 3-isopropylmalate dehydratase large subunit 0.83 9
Escherichia coli ECRC62 0.24 BNILDI_22950 proC pyrroline-5-carboxylate reductase 0.60 BNILDI_08540 leuC1 3-isopropylmalate dehydratase large subunit 1 0.82 13
Escherichia coli BW25113 0.24 b0386 proC pyrroline-5-carboxylate reductase (NCBI) 0.60 b0072 leuC isopropylmalate isomerase large subunit (NCBI) 0.87 9
Escherichia coli ECOR27 0.24 NOLOHH_01535 proC pyrroline-5-carboxylate reductase 0.60 NOLOHH_03070 leuC1 3-isopropylmalate dehydratase large subunit 1 0.89 27
Pantoea sp. MT58 0.24 IAI47_14945 pyrroline-5-carboxylate reductase 0.59 IAI47_16010 3-isopropylmalate dehydratase large subunit 0.82 33
Enterobacter asburiae PDN3 0.23 EX28DRAFT_2585 pyrroline-5-carboxylate reductase 0.60 EX28DRAFT_3668 3-isopropylmalate dehydratase, large subunit 0.54 60
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.23 GFF4283 Pyrroline-5-carboxylate reductase (EC 1.5.1.2) 0.59 GFF166 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) low > 78
Enterobacter sp. TBS_079 0.23 MPMX20_00976 Pyrroline-5-carboxylate reductase 0.59 MPMX20_00767 3-isopropylmalate dehydratase large subunit 1 0.86 31
Bosea sp. OAE506 0.21 ABIE41_RS11365 pyrroline-5-carboxylate reductase 0.63 ABIE41_RS11660 3-isopropylmalate dehydratase large subunit
Dinoroseobacter shibae DFL-12 0.21 Dshi_2645 pyrroline-5-carboxylate reductase (RefSeq) 0.59 Dshi_0085 3-isopropylmalate dehydratase, large subunit (RefSeq)
Erwinia tracheiphila SCR3 0.21 LU632_RS18995 proC pyrroline-5-carboxylate reductase 0.55 LU632_RS02870 leuC 3-isopropylmalate dehydratase large subunit 0.59 41
Mycobacterium tuberculosis H37Rv 0.20 Rv0500 Probable pyrroline-5-carboxylate reductase ProC (P5CR) (P5C reductase) 0.55 Rv2988c Probable 3-isopropylmalate dehydratase (large subunit) LeuC (isopropylmalate isomerase) (alpha-IPM isomerase) (IPMI)
Echinicola vietnamensis KMM 6221, DSM 17526 0.20 Echvi_2635 pyrroline-5-carboxylate reductase 0.48 Echvi_2059 3-isopropylmalate dehydratase, large subunit 0.58 57
Desulfovibrio vulgaris Hildenborough JW710 0.20 DVU2332 proC pyrroline-5-carboxylate reductase (EC 1.5.1.2) (from data) 0.19 DVU2982 leuC 3-isopropylmalate dehydratase / (R)-citramalate isomerase, large subunit LeuC (EC 4.2.1.33; EC 4.2.1.35) (from data) 0.85 12
Caulobacter crescentus NA1000 Δfur 0.18 CCNA_00528 pyrroline-5-carboxylate reductase 0.59 CCNA_00196 3-isopropylmalate dehydratase large subunit low > 67
Caulobacter crescentus NA1000 0.18 CCNA_00528 pyrroline-5-carboxylate reductase (EC 1.5.1.2) (from data) 0.59 CCNA_00196 3-isopropylmalate dehydratase large subunit 0.91 28
Desulfovibrio vulgaris Miyazaki F 0.16 DvMF_3161 pyrroline-5-carboxylate reductase (EC 1.5.1.2) (from data) 0.19 DvMF_1792 3-isopropylmalate dehydratase large subunit (RefSeq) 0.93 10
Phocaeicola dorei CL03T12C01 0.16 ABI39_RS02960 pyrroline-5-carboxylate reductase 0.48 ABI39_RS10200 3-isopropylmalate dehydratase large subunit 0.87 5
Pontibacter actiniarum KMM 6156, DSM 19842 0.15 CA264_07730 pyrroline-5-carboxylate reductase 0.50 CA264_09435 3-isopropylmalate dehydratase large subunit low > 74
Phocaeicola vulgatus CL09T03C04 0.15 HMPREF1058_RS08830 pyrroline-5-carboxylate reductase 0.48 HMPREF1058_RS14550 3-isopropylmalate dehydratase large subunit 0.84 34
Brevundimonas sp. GW460-12-10-14-LB2 0.15 A4249_RS09840 pyrroline-5-carboxylate reductase dimerization domain-containing protein 0.45 A4249_RS10005 3-isopropylmalate dehydratase large subunit 0.98 8
Bacteroides ovatus ATCC 8483 0.15 BACOVA_03587 pyrroline-5-carboxylate reductase 0.48 BACOVA_04603 3-isopropylmalate dehydratase, large subunit 0.90 10
Bacteroides stercoris CC31F 0.15 HMPREF1181_RS03440 pyrroline-5-carboxylate reductase 0.49 HMPREF1181_RS14145 3-isopropylmalate dehydratase large subunit 0.91 31
Mucilaginibacter yixingensis YX-36 DSM 26809 0.14 ABZR88_RS09865 pyrroline-5-carboxylate reductase 0.52 ABZR88_RS11595 3-isopropylmalate dehydratase large subunit
Bacteroides thetaiotaomicron VPI-5482 0.13 BT3757 pyrroline-5-carboxylate reductase (EC 1.5.1.2) (from data) 0.47 BT1860 3-isopropylmalate dehydratase large subunit (NCBI ptt file) 0.83 36
Bifidobacterium breve UCC2003 0.09 BBR_RS14625 pyrroline-5-carboxylate reductase 0.52 BBR_RS19630 3-isopropylmalate dehydratase large subunit low > 34

Not shown: 0 genomes with orthologs for Xcc-8004.1710.1 only; 6 genomes with orthologs for Xcc-8004.1049.1 only