| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Rhodopseudomonas palustris CGA009 | 1.0 | TX73_016655 | | replication-associated recombination protein A | 1.0 | TX73_002655 | | DNA mismatch repair protein MutS | 0.44 | 5 |
| Sinorhizobium meliloti 1021 | 0.77 | SMc01279 | | recombination factor protein RarA | 0.55 | SMc01125 | | DNA mismatch repair protein MutS | low | > 103 |
| Agrobacterium fabrum C58 | 0.74 | Atu1914 | | ATPase, AAA family protein | 0.58 | Atu0345 | | DNA mismatch repair protein, MutS family | low | > 89 |
| Rhizobium sp. OAE497 | 0.73 | ABIE40_RS08045 | | replication-associated recombination protein A | 0.57 | ABIE40_RS01775 | | DNA mismatch repair protein MutS | low | > 107 |
| Bosea sp. OAE506 | 0.73 | ABIE41_RS14690 | | replication-associated recombination protein A | 0.55 | ABIE41_RS03650 | | DNA mismatch repair protein MutS | low | > 77 |
| Azospirillum sp. SherDot2 | 0.66 | MPMX19_01528 | | Replication-associated recombination protein A | 0.51 | MPMX19_00908 | | DNA mismatch repair protein MutS | low | > 112 |
| Azospirillum brasilense Sp245 | 0.64 | AZOBR_RS06885 | | ATPase AAA | 0.50 | AZOBR_RS02125 | | DNA mismatch repair protein MutS | low | > 97 |
| Rhodospirillum rubrum S1H | 0.63 | Rru_A2660 | | AAA ATPase, central region (NCBI) | 0.50 | Rru_A3541 | | MutS 1 protein (NCBI) | low | > 58 |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.60 | A4249_RS07890 | | replication-associated recombination protein A | 0.44 | A4249_RS12110 | | DNA mismatch repair protein MutS | low | > 48 |
| Dinoroseobacter shibae DFL-12 | 0.60 | Dshi_0313 | | AAA ATPase central domain protein (RefSeq) | 0.48 | Dshi_3466 | | DNA mismatch repair protein MutS (RefSeq) | low | > 64 |
| Caulobacter crescentus NA1000 Δfur | 0.59 | CCNA_01342 | | ATPase, AAA family | 0.45 | CCNA_00012 | | DNA mismatch repair protein MutS | low | > 67 |
| Caulobacter crescentus NA1000 | 0.59 | CCNA_01342 | | ATPase, AAA family | 0.45 | CCNA_00012 | | DNA mismatch repair protein MutS | low | > 66 |
| Phaeobacter inhibens DSM 17395 | 0.59 | PGA1_c01930 | | replication-associated recombination protein A | 0.49 | PGA1_c35000 | | DNA mismatch repair protein MutS | low | > 62 |
| Magnetospirillum magneticum AMB-1 | 0.57 | AMB_RS17620 | | replication-associated recombination protein A | 0.47 | AMB_RS01455 | | DNA mismatch repair protein MutS | low | > 64 |
| Kangiella aquimarina DSM 16071 | 0.48 | B158DRAFT_1819 | | ATPase related to the helicase subunit of the Holliday junction resolvase | 0.32 | B158DRAFT_1529 | | DNA mismatch repair protein MutS | low | > 40 |
| Pseudomonas sp. RS175 | 0.47 | PFR28_02606 | | Replication-associated recombination protein A | 0.32 | PFR28_00429 | | DNA mismatch repair protein MutS | low | > 88 |
| Pseudomonas sp. S08-1 | 0.47 | OH686_00270 | | Replication-associated recombination protein RarA | 0.31 | OH686_18195 | | DNA mismatch repair protein MutS | low | > 80 |
| Pseudomonas fluorescens FW300-N2E2 | 0.47 | Pf6N2E2_299 | | FIG065221: Holliday junction DNA helicase | 0.32 | Pf6N2E2_3035 | | DNA mismatch repair protein MutS | low | > 103 |
| Pseudomonas fluorescens FW300-N2E3 | 0.47 | AO353_27640 | | recombination factor protein RarA | 0.32 | AO353_16625 | | DNA mismatch repair protein MutS | low | > 101 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.47 | Psyr_3177 | | Recombination protein MgsA | 0.32 | Psyr_1376 | | DNA mismatch repair protein MutS | low | > 86 |
| Pseudomonas syringae pv. syringae B728a | 0.47 | Psyr_3177 | | Recombination protein MgsA | 0.32 | Psyr_1376 | | DNA mismatch repair protein MutS | low | > 86 |
| Pseudomonas fluorescens FW300-N2C3 | 0.47 | AO356_22185 | | recombination factor protein RarA | 0.32 | AO356_05875 | | DNA mismatch repair protein MutS | low | > 104 |
| Pseudomonas fluorescens FW300-N1B4 | 0.46 | Pf1N1B4_4062 | | FIG065221: Holliday junction DNA helicase | 0.32 | Pf1N1B4_3117 | | DNA mismatch repair protein MutS | low | > 87 |
| Pseudomonas stutzeri RCH2 | 0.46 | Psest_2034 | | ATPase related to the helicase subunit of the Holliday junction resolvase | 0.33 | Psest_2875 | | DNA mismatch repair protein MutS | low | > 67 |
| Pseudomonas fluorescens GW456-L13 | 0.46 | PfGW456L13_2653 | | FIG065221: Holliday junction DNA helicase | 0.32 | PfGW456L13_4672 | | DNA mismatch repair protein MutS | low | > 87 |
| Pseudomonas simiae WCS417 | 0.46 | PS417_16480 | | recombination factor protein RarA | 0.32 | PS417_05680 | | DNA mismatch repair protein MutS | low | > 88 |
| Pseudomonas putida KT2440 | 0.46 | PP_4002 | | DNA-dependent ATPase required for recombination | 0.32 | PP_1626 | | DNA mismatch repair protein MutS | low | > 96 |
| Pseudomonas fluorescens SBW25-INTG | 0.46 | PFLU_RS18520 | | replication-associated recombination protein A | 0.32 | PFLU_RS05765 | | DNA mismatch repair protein MutS | low | > 109 |
| Pseudomonas fluorescens SBW25 | 0.46 | PFLU_RS18520 | | replication-associated recombination protein A | 0.32 | PFLU_RS05765 | | DNA mismatch repair protein MutS | low | > 109 |
| Marinobacter adhaerens HP15 | 0.45 | HP15_1817 | | recombination factor protein RarA | 0.32 | HP15_1047 | | DNA mismatch repair protein MutS | low | > 73 |
| Rhodanobacter sp. FW510-T8 | 0.45 | OKGIIK_07580 | rarA | recombination factor protein RarA | 0.31 | OKGIIK_03705 | mutS | DNA mismatch repair protein MutS | low | > 52 |
| Paraburkholderia graminis OAS925 | 0.45 | ABIE53_001292 | | putative ATPase | 0.32 | ABIE53_002719 | | DNA mismatch repair protein MutS | low | > 113 |
| Rhodanobacter denitrificans MT42 | 0.44 | LRK55_RS17545 | | replication-associated recombination protein A | 0.31 | LRK55_RS14650 | | DNA mismatch repair protein MutS | low | > 63 |
| Rhodanobacter denitrificans FW104-10B01 | 0.44 | LRK54_RS17320 | | replication-associated recombination protein A | 0.31 | LRK54_RS14935 | | DNA mismatch repair protein MutS | low | > 59 |
| Shewanella sp. ANA-3 | 0.44 | Shewana3_2052 | | recombination factor protein RarA (RefSeq) | 0.33 | Shewana3_1125 | | DNA mismatch repair protein MutS (RefSeq) | low | > 73 |
| Dyella japonica UNC79MFTsu3.2 | 0.44 | ABZR86_RS01825 | | replication-associated recombination protein A | 0.32 | ABZR86_RS00630 | | DNA mismatch repair protein MutS | low | > 74 |
| Shewanella oneidensis MR-1 | 0.44 | SO2308 | | ATPase, AAA family (NCBI ptt file) | 0.32 | SO3431 | mutS | DNA mismatch repair protein MutS (NCBI ptt file) | low | > 76 |
| Shewanella loihica PV-4 | 0.44 | Shew_2022 | | recombination factor protein RarA (RefSeq) | 0.33 | Shew_1214 | | DNA mismatch repair protein (RefSeq) | low | > 60 |
| Shewanella amazonensis SB2B | 0.44 | Sama_1774 | | recombination factor protein RarA (RefSeq) | 0.32 | Sama_1045 | | DNA mismatch repair protein MutS (RefSeq) | low | > 62 |
| Burkholderia phytofirmans PsJN | 0.44 | BPHYT_RS05100 | | ATPase AAA | 0.32 | BPHYT_RS12475 | | DNA mismatch repair protein MutS | low | > 109 |
| Paraburkholderia sabiae LMG 24235 | 0.44 | QEN71_RS03415 | | replication-associated recombination protein A | 0.30 | QEN71_RS06085 | | DNA mismatch repair protein MutS | low | > 153 |
| Cupriavidus basilensis FW507-4G11 | 0.44 | RR42_RS04355 | | recombination factor protein RarA | 0.31 | RR42_RS06285 | | DNA mismatch repair protein MutS | low | > 128 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.44 | H281DRAFT_00180 | | Recombination protein MgsA | 0.32 | H281DRAFT_00537 | | DNA mismatch repair protein MutS | low | > 103 |
| Dechlorosoma suillum PS | 0.43 | Dsui_1694 | | AAA ATPase | 0.34 | Dsui_2244 | | DNA mismatch repair protein MutS | low | > 51 |
| Ralstonia sp. UNC404CL21Col | 0.43 | ABZR87_RS16030 | | replication-associated recombination protein A | 0.31 | ABZR87_RS10580 | | DNA mismatch repair protein MutS | low | > 80 |
| Herbaspirillum seropedicae SmR1 | 0.43 | HSERO_RS09515 | | ATPase AAA | 0.30 | HSERO_RS16360 | | DNA mismatch repair protein MutS | low | > 78 |
| Dickeya dianthicola 67-19 | 0.43 | HGI48_RS09620 | | replication-associated recombination protein A | 0.31 | HGI48_RS05230 | | DNA mismatch repair protein MutS | low | > 71 |
| Dickeya dianthicola ME23 | 0.43 | DZA65_RS09930 | | replication-associated recombination protein A | 0.31 | DZA65_RS05570 | | DNA mismatch repair protein MutS | low | > 75 |
| Klebsiella michiganensis M5al | 0.43 | BWI76_RS09670 | | recombination factor protein RarA | 0.31 | BWI76_RS22600 | | DNA mismatch repair protein MutS | low | > 92 |
| Rahnella sp. WP5 | 0.43 | EX31_RS18515 | | replication-associated recombination protein A | 0.30 | EX31_RS07820 | | DNA mismatch repair protein MutS | low | > 89 |
| Variovorax sp. SCN45 | 0.43 | GFF6034 | | Replication-associated recombination protein RarA | 0.27 | GFF6634 | | DNA mismatch repair protein MutS | low | > 127 |
| Dickeya dadantii 3937 | 0.43 | DDA3937_RS09605 | | replication-associated recombination protein A | 0.32 | DDA3937_RS05230 | | DNA mismatch repair protein MutS | low | > 74 |
| Ralstonia solanacearum UW163 | 0.43 | UW163_RS09525 | | replication-associated recombination protein A | 0.30 | UW163_RS12390 | | DNA mismatch repair protein MutS | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.43 | RALBFv3_RS04145 | | replication-associated recombination protein A | 0.30 | RALBFv3_RS14920 | | DNA mismatch repair protein MutS | low | > 76 |
| Ralstonia solanacearum PSI07 | 0.43 | RPSI07_RS13205 | | replication-associated recombination protein A | 0.31 | RPSI07_RS18440 | | DNA mismatch repair protein MutS | low | > 81 |
| Enterobacter sp. TBS_079 | 0.43 | MPMX20_01554 | | Replication-associated recombination protein A | 0.31 | MPMX20_03619 | | DNA mismatch repair protein MutS | low | > 85 |
| Variovorax sp. OAS795 | 0.43 | ABID97_RS07835 | | replication-associated recombination protein A | 0.27 | ABID97_RS20815 | | DNA mismatch repair protein MutS | 0.38 | 22 |
| Serratia liquefaciens MT49 | 0.43 | IAI46_08570 | | replication-associated recombination protein A | 0.31 | IAI46_03800 | | DNA mismatch repair protein MutS | low | > 86 |
| Castellaniella sp019104865 MT123 | 0.42 | ABCV34_RS07220 | | replication-associated recombination protein A | 0.30 | ABCV34_RS00270 | | DNA mismatch repair protein MutS | low | > 48 |
| Ralstonia solanacearum GMI1000 | 0.42 | RS_RS11735 | | replication-associated recombination protein A | 0.30 | RS_RS05735 | | DNA mismatch repair protein MutS | low | > 80 |
| Enterobacter asburiae PDN3 | 0.42 | EX28DRAFT_2040 | | ATPase related to the helicase subunit of the Holliday junction resolvase | 0.31 | EX28DRAFT_2829 | | DNA mismatch repair protein MutS | low | > 76 |
| Acidovorax sp. GW101-3H11 | 0.42 | Ac3H11_1696 | | FIG065221: Holliday junction DNA helicase | 0.29 | Ac3H11_3641 | | DNA mismatch repair protein MutS | low | > 79 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.42 | Xcc-8004.2744.1 | | FIG065221: Holliday junction DNA helicase | 0.31 | Xcc-8004.3760.1 | | DNA mismatch repair protein MutS | low | > 74 |
| Pectobacterium carotovorum WPP14 | 0.42 | HER17_RS12345 | | replication-associated recombination protein A | 0.32 | HER17_RS16220 | | DNA mismatch repair protein MutS | low | > 75 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.42 | GFF4896 | | FIG065221: Holliday junction DNA helicase | 0.31 | GFF4773 | | DNA mismatch repair protein MutS | low | > 78 |
| Escherichia coli ECRC62 | 0.42 | BNILDI_20385 | rarA | replication-associated recombination protein RarA | 0.31 | BNILDI_10920 | mutS | DNA mismatch repair protein MutS | low | > 75 |
| Escherichia coli ECOR38 | 0.42 | HEPCGN_22950 | rarA | replication-associated recombination protein RarA | 0.31 | HEPCGN_19705 | mutS | DNA mismatch repair protein MutS | low | > 87 |
| Escherichia coli ECOR27 | 0.42 | NOLOHH_22130 | rarA | replication-associated recombination protein RarA | 0.31 | NOLOHH_12370 | mutS | DNA mismatch repair protein MutS | low | > 75 |
| Escherichia coli ECRC98 | 0.42 | JDDGAC_09370 | rarA | replication-associated recombination protein RarA | 0.31 | JDDGAC_24190 | mutS | DNA mismatch repair protein MutS | low | > 86 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.42 | OHPLBJKB_02776 | | Replication-associated recombination protein A | 0.31 | OHPLBJKB_01000 | | DNA mismatch repair protein MutS | low | > 73 |
| Escherichia coli Nissle 1917 | 0.42 | ECOLIN_RS04745 | | replication-associated recombination protein RarA | 0.31 | ECOLIN_RS15275 | | DNA mismatch repair protein MutS | low | > 55 |
| Escherichia coli ECRC102 | 0.42 | NIAGMN_03280 | rarA | replication-associated recombination protein RarA | 0.31 | NIAGMN_18295 | mutS | DNA mismatch repair protein MutS | — | — |
| Escherichia coli ECRC100 | 0.42 | OKFHMN_05560 | rarA | replication-associated recombination protein RarA | 0.31 | OKFHMN_20525 | mutS | DNA mismatch repair protein MutS | low | > 80 |
| Escherichia coli BL21 | 0.42 | ECD_00896 | | recombination intermediate processing DNA-dependent ATPase | 0.31 | ECD_02583 | | methyl-directed mismatch repair protein | low | > 61 |
| Escherichia coli ECRC99 | 0.42 | KEDOAH_22175 | rarA | replication-associated recombination protein RarA | 0.31 | KEDOAH_07610 | mutS | DNA mismatch repair protein MutS | — | — |
| Escherichia coli BW25113 | 0.42 | b0892 | ycaJ | recombination protein (NCBI) | 0.31 | b2733 | mutS | DNA mismatch repair protein (NCBI) | low | > 76 |
| Escherichia coli ECRC101 | 0.42 | MCAODC_24950 | rarA | replication-associated recombination protein RarA | 0.31 | MCAODC_11050 | mutS | DNA mismatch repair protein MutS | low | > 87 |
| Escherichia fergusonii Becca | 0.42 | EFB2_03169 | | Replication-associated recombination protein A | 0.31 | EFB2_01179 | | DNA mismatch repair protein MutS | low | > 86 |
| Erwinia tracheiphila SCR3 | 0.42 | LU632_RS09755 | | replication-associated recombination protein A | 0.31 | LU632_RS06485 | mutS | DNA mismatch repair protein MutS | low | > 74 |
| Vibrio cholerae E7946 ATCC 55056 | 0.42 | CSW01_05630 | | replication-associated recombination protein A | 0.33 | CSW01_02840 | | DNA mismatch repair protein MutS | low | > 62 |
| Pantoea sp. MT58 | 0.42 | IAI47_12900 | | replication-associated recombination protein A | 0.32 | IAI47_04240 | | DNA mismatch repair protein MutS | low | > 76 |
| Pontibacter actiniarum KMM 6156, DSM 19842 | 0.41 | CA264_02215 | | AAA family ATPase | 0.30 | CA264_18545 | | DNA mismatch repair protein MutS | low | > 74 |
| Alteromonas macleodii MIT1002 | 0.40 | MIT1002_02178 | | Replication-associated recombination protein A | 0.33 | MIT1002_00953 | | DNA mismatch repair protein MutS | low | > 70 |
| Lysobacter sp. OAE881 | 0.40 | ABIE51_RS11445 | | replication-associated recombination protein A | 0.33 | ABIE51_RS07785 | | DNA mismatch repair protein MutS | low | > 62 |
| Bacteroides ovatus ATCC 8483 | 0.39 | BACOVA_03971 | | ATPase, AAA family | 0.29 | BACOVA_02824 | | DNA mismatch repair protein MutS | 0.42 | 15 |
| Echinicola vietnamensis KMM 6221, DSM 17526 | 0.39 | Echvi_4603 | | ATPase related to the helicase subunit of the Holliday junction resolvase | 0.31 | Echvi_0960 | | DNA mismatch repair protein MutS | low | > 79 |
| Pedobacter sp. GW460-11-11-14-LB5 | 0.39 | CA265_RS22400 | | AAA family ATPase | 0.29 | CA265_RS08220 | | DNA mismatch repair protein MutS | low | > 88 |
| Bacteroides stercoris CC31F | 0.38 | HMPREF1181_RS16975 | | replication-associated recombination protein A | 0.29 | HMPREF1181_RS01980 | | DNA mismatch repair protein MutS | low | > 56 |
| Phocaeicola dorei CL03T12C01 | 0.38 | ABI39_RS20200 | | replication-associated recombination protein A | 0.30 | ABI39_RS05500 | | DNA mismatch repair protein MutS | low | > 72 |
| Phocaeicola vulgatus CL09T03C04 | 0.38 | HMPREF1058_RS06440 | | replication-associated recombination protein A | 0.30 | HMPREF1058_RS11435 | | DNA mismatch repair protein MutS | low | > 67 |
| Bacteroides thetaiotaomicron VPI-5482 | 0.38 | BT1205 | | putative ATPase, AAA family (NCBI ptt file) | 0.30 | BT3121 | | DNA mismatch repair protein mutS (NCBI ptt file) | low | > 81 |
| Mucilaginibacter yixingensis YX-36 DSM 26809 | 0.38 | ABZR88_RS20285 | | replication-associated recombination protein A | 0.29 | ABZR88_RS10580 | | DNA mismatch repair protein MutS | low | > 71 |
| Acinetobacter radioresistens SK82 | 0.38 | MPMX26_02987 | | Replication-associated recombination protein A | 0.30 | MPMX26_01954 | | DNA mismatch repair protein MutS | low | > 36 |
| Parabacteroides merdae CL09T00C40 | 0.37 | HMPREF1078_RS15395 | | replication-associated recombination protein A | 0.31 | HMPREF1078_RS06455 | | DNA mismatch repair protein MutS | low | > 61 |
| Desulfovibrio vulgaris Miyazaki F | 0.35 | DvMF_0339 | | recombination factor protein RarA (RefSeq) | 0.29 | DvMF_0355 | | DNA mismatch repair protein MutS (RefSeq) | low | > 51 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.35 | GFF777 | | FIG065221: Holliday junction DNA helicase | 0.28 | GFF3599 | | DNA mismatch repair protein MutS | low | > 90 |
| Desulfovibrio vulgaris Hildenborough JW710 | 0.34 | DVU1686 | | ATPase, AAA family (TIGR) | 0.30 | DVU1649 | mutS | DNA mismatch repair protein MutS (TIGR) | low | > 55 |
| Fusobacterium nucleatum SB010 | 0.31 | HUW76_02735 | | replication-associated recombination protein A | 0.31 | HUW76_04335 | | DNA mismatch repair protein MutS | low | > 35 |
Not shown: 2 genomes with orthologs for TX73_016655 only; 2 genomes with orthologs for TX73_002655 only