Conservation of cofitness between RR42_RS05910 and RR42_RS14000 in Cupriavidus basilensis FW507-4G11

90 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Cupriavidus basilensis FW507-4G11 1.0 RR42_RS05910 DNA repair protein 1.0 RR42_RS14000 excinuclease ABC subunit C 0.69 4
Ralstonia solanacearum UW163 0.63 UW163_RS08210 DNA repair protein RecN 0.75 UW163_RS11990 excinuclease ABC subunit UvrC — —
Ralstonia solanacearum IBSBF1503 0.63 RALBFv3_RS05415 DNA repair protein RecN 0.75 RALBFv3_RS14525 excinuclease ABC subunit UvrC low > 76
Ralstonia sp. UNC404CL21Col 0.63 ABZR87_RS01065 DNA repair protein RecN 0.76 ABZR87_RS10245 excinuclease ABC subunit UvrC low > 80
Ralstonia solanacearum PSI07 0.63 RPSI07_RS11890 DNA repair protein RecN 0.76 RPSI07_RS18935 excinuclease ABC subunit UvrC low > 81
Ralstonia solanacearum GMI1000 0.62 RS_RS13275 DNA repair protein RecN 0.76 RS_RS05305 excinuclease ABC subunit UvrC low > 80
Herbaspirillum seropedicae SmR1 0.55 HSERO_RS03060 DNA repair protein 0.64 HSERO_RS09690 excinuclease ABC subunit C low > 78
Paraburkholderia sabiae LMG 24235 0.55 QEN71_RS26535 DNA repair protein RecN 0.68 QEN71_RS04665 excinuclease ABC subunit UvrC low > 153
Paraburkholderia graminis OAS925 0.54 ABIE53_000856 DNA repair protein RecN (Recombination protein N) 0.67 ABIE53_003025 excinuclease ABC subunit C 0.42 1
Burkholderia phytofirmans PsJN 0.53 BPHYT_RS03560 DNA repair protein 0.67 BPHYT_RS14320 UvrABC system protein C 0.20 108
Dechlorosoma suillum PS 0.46 Dsui_3072 DNA repair protein RecN 0.44 Dsui_2470 excinuclease ABC, C subunit 0.83 10
Castellaniella sp019104865 MT123 0.44 ABCV34_RS07470 DNA repair protein RecN 0.53 ABCV34_RS06980 excinuclease ABC subunit UvrC low > 48
Acidovorax sp. GW101-3H11 0.42 Ac3H11_3460 DNA repair protein RecN 0.57 Ac3H11_373 Excinuclease ABC subunit C low > 79
Variovorax sp. SCN45 0.41 GFF2357 DNA repair protein RecN 0.59 GFF2859 Excinuclease ABC subunit C low > 127
Hydrogenophaga sp. GW460-11-11-14-LB1 0.41 GFF829 DNA repair protein RecN 0.57 GFF3847 Excinuclease ABC subunit C — —
Rahnella sp. WP5 0.38 EX31_RS21760 DNA repair protein RecN 0.38 EX31_RS24150 excinuclease ABC subunit UvrC low > 89
Pseudomonas sp. S08-1 0.37 OH686_17050 DNA repair protein RecN 0.38 OH686_00340 excinuclease ABC subunit C low > 80
Pantoea sp. MT58 0.37 IAI47_04810 DNA repair protein RecN 0.39 IAI47_12465 excinuclease ABC subunit UvrC low > 76
Escherichia coli Nissle 1917 0.37 ECOLIN_RS14775 DNA repair protein RecN 0.38 ECOLIN_RS10895 excinuclease ABC subunit UvrC low > 55
Enterobacter sp. TBS_079 0.37 MPMX20_03486 DNA repair protein RecN 0.38 MPMX20_02838 UvrABC system protein C low > 85
Escherichia coli BL21 0.37 ECD_02504 recombination and repair protein 0.38 ECD_01878 excinuclease UvrABC, endonuclease subunit low > 61
Escherichia coli ECOR27 0.37 NOLOHH_12815 recN DNA repair protein RecN 0.38 NOLOHH_16445 uvrC excinuclease ABC subunit UvrC low > 75
Escherichia coli BW25113 0.37 b2616 recN recombination and repair protein (NCBI) 0.38 b1913 uvrC excinuclease ABC, subunit C; repair of UV damage to DNA (VIMSS) 0.40 19
Escherichia coli ECRC62 0.37 BNILDI_11620 recN DNA repair protein RecN 0.38 BNILDI_15235 uvrC excinuclease ABC subunit UvrC low > 75
Marinobacter adhaerens HP15 0.37 HP15_3084 DNA repair protein RecN 0.37 HP15_1568 excinuclease ABC subunit C 0.86 7
Escherichia coli HS(pFamp)R (ATCC 700891) 0.37 OHPLBJKB_01091 DNA repair protein RecN 0.38 OHPLBJKB_01816 UvrABC system protein C low > 73
Dickeya dadantii 3937 0.37 DDA3937_RS04325 DNA repair protein RecN 0.38 DDA3937_RS13700 excinuclease ABC subunit UvrC low > 74
Escherichia coli ECOR38 0.37 HEPCGN_20265 recN DNA repair protein RecN 0.38 HEPCGN_04180 uvrC excinuclease ABC subunit UvrC low > 87
Escherichia fergusonii Becca 0.36 EFB2_01277 DNA repair protein RecN 0.38 EFB2_02033 UvrABC system protein C low > 86
Escherichia coli ECRC102 0.36 NIAGMN_18915 recN DNA repair protein RecN 0.38 NIAGMN_02225 uvrC excinuclease ABC subunit UvrC — —
Escherichia coli ECRC100 0.36 OKFHMN_21145 recN DNA repair protein RecN 0.38 OKFHMN_25825 uvrC excinuclease ABC subunit UvrC low > 80
Escherichia coli ECRC101 0.36 MCAODC_11670 recN DNA repair protein RecN 0.38 MCAODC_19565 uvrC excinuclease ABC subunit UvrC low > 87
Escherichia coli ECRC99 0.36 KEDOAH_07075 recN DNA repair protein RecN 0.38 KEDOAH_02265 uvrC excinuclease ABC subunit UvrC — —
Escherichia coli ECRC98 0.36 JDDGAC_24810 recN DNA repair protein RecN 0.38 JDDGAC_00415 uvrC excinuclease ABC subunit UvrC low > 86
Serratia liquefaciens MT49 0.36 IAI46_19635 DNA repair protein RecN 0.38 IAI46_09210 excinuclease ABC subunit UvrC 0.55 4
Enterobacter asburiae PDN3 0.36 EX28DRAFT_2719 DNA repair protein RecN 0.38 EX28DRAFT_0634 Excinuclease ABC subunit C low > 76
Kangiella aquimarina DSM 16071 0.36 B158DRAFT_0601 DNA replication and repair protein RecN 0.37 B158DRAFT_1273 Excinuclease ABC subunit C 0.64 10
Pseudomonas fluorescens GW456-L13 0.36 PfGW456L13_5106 DNA repair protein RecN 0.39 PfGW456L13_2886 Excinuclease ABC subunit C low > 87
Pseudomonas fluorescens FW300-N1B4 0.36 Pf1N1B4_1178 DNA repair protein RecN 0.39 Pf1N1B4_5618 Excinuclease ABC subunit C 0.42 4
Pseudomonas fluorescens FW300-N2E2 0.36 Pf6N2E2_3370 DNA repair protein RecN 0.38 Pf6N2E2_2021 Excinuclease ABC subunit C 0.69 4
Klebsiella michiganensis M5al 0.36 BWI76_RS21560 DNA repair protein RecN 0.38 BWI76_RS18330 excinuclease ABC subunit C low > 92
Shewanella amazonensis SB2B 0.36 Sama_1026 recombination and repair protein (RefSeq) 0.35 Sama_1608 uvrC excinuclease ABC subunit C (RefSeq) 0.67 8
Dickeya dianthicola 67-19 0.36 HGI48_RS04320 DNA repair protein RecN 0.38 HGI48_RS13795 excinuclease ABC subunit UvrC low > 71
Pseudomonas sp. RS175 0.36 PFR28_00071 DNA repair protein RecN 0.38 PFR28_01411 UvrABC system protein C low > 88
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.36 GFF4162 DNA repair protein RecN 0.38 GFF1700 Excinuclease ABC subunit C low > 78
Dickeya dianthicola ME23 0.35 DZA65_RS04235 DNA repair protein RecN 0.38 DZA65_RS14285 excinuclease ABC subunit UvrC low > 75
Erwinia tracheiphila SCR3 0.35 LU632_RS16985 recN DNA repair protein RecN 0.38 LU632_RS10195 uvrC excinuclease ABC subunit UvrC low > 74
Pectobacterium carotovorum WPP14 0.35 HER17_RS17420 DNA repair protein RecN 0.37 HER17_RS07715 excinuclease ABC subunit UvrC low > 75
Pseudomonas stutzeri RCH2 0.35 Psest_0962 DNA repair protein RecN 0.40 Psest_2259 excinuclease ABC, C subunit 0.73 4
Pseudomonas fluorescens FW300-N2C3 0.35 AO356_07510 DNA repair protein RecN 0.39 AO356_00350 excinuclease ABC subunit C 0.81 3
Pseudomonas fluorescens SBW25-INTG 0.35 PFLU_RS25910 DNA repair protein RecN 0.39 PFLU_RS10770 excinuclease ABC subunit UvrC low > 109
Pseudomonas fluorescens SBW25 0.35 PFLU_RS25910 DNA repair protein RecN 0.39 PFLU_RS10770 excinuclease ABC subunit UvrC 0.55 6
Pseudomonas simiae WCS417 0.34 PS417_24070 recombination and repair protein 0.39 PS417_10725 excinuclease ABC subunit C 0.43 9
Shewanella oneidensis MR-1 0.34 SO3462 recN DNA repair protein RecN (NCBI ptt file) 0.37 SO1861 uvrC excinuclease ABC, C subunit (NCBI ptt file) 0.51 8
Pseudomonas fluorescens FW300-N2E3 0.34 AO353_05660 DNA repair protein RecN 0.39 AO353_21835 excinuclease ABC subunit C 0.62 4
Shewanella sp. ANA-3 0.34 Shewana3_1104 recombination and repair protein (RefSeq) 0.37 Shewana3_1609 uvrC excinuclease ABC subunit C (RefSeq) low > 73
Pseudomonas syringae pv. syringae B728a ΔmexB 0.34 Psyr_4197 DNA replication and repair protein RecN 0.39 Psyr_2896 Excinuclease ABC subunit C 0.38 62
Pseudomonas syringae pv. syringae B728a 0.34 Psyr_4197 DNA replication and repair protein RecN 0.39 Psyr_2896 Excinuclease ABC subunit C 0.42 9
Pseudomonas putida KT2440 0.33 PP_4729 factor used in recombination and DNA repair 0.40 PP_4098 UvrABC system protein C low > 96
Vibrio cholerae E7946 ATCC 55056 0.33 CSW01_04395 DNA repair protein RecN 0.38 CSW01_06140 excinuclease ABC subunit C 0.38 45
Dyella japonica UNC79MFTsu3.2 0.33 ABZR86_RS05665 DNA repair protein RecN 0.40 ABZR86_RS02245 excinuclease ABC subunit UvrC 0.85 4
Rhodanobacter sp. FW510-T8 0.33 OKGIIK_07340 recN DNA repair protein RecN 0.39 OKGIIK_06930 uvrC excinuclease ABC subunit UvrC low > 52
Shewanella loihica PV-4 0.32 Shew_1196 recombination and repair protein (RefSeq) 0.36 Shew_1825 uvrC excinuclease ABC subunit C (RefSeq) 0.62 7
Rhodanobacter denitrificans FW104-10B01 0.32 LRK54_RS17960 DNA repair protein RecN 0.41 LRK54_RS00380 excinuclease ABC subunit UvrC low > 59
Rhodanobacter denitrificans MT42 0.32 LRK55_RS17815 DNA repair protein RecN 0.41 LRK55_RS00120 excinuclease ABC subunit UvrC low > 63
Acinetobacter radioresistens SK82 0.32 MPMX26_00239 DNA repair protein RecN 0.36 MPMX26_00228 UvrABC system protein C 0.61 1
Lysobacter sp. OAE881 0.32 ABIE51_RS11655 DNA repair protein RecN 0.38 ABIE51_RS12455 excinuclease ABC subunit UvrC 0.68 6
Xanthomonas campestris pv. campestris strain 8004 0.31 Xcc-8004.3431.1 DNA repair protein RecN 0.37 Xcc-8004.2477.1 Excinuclease ABC subunit C low > 74
Alteromonas macleodii MIT1002 0.31 MIT1002_01443 Recombination protein N 0.38 MIT1002_02153 Excinuclease ABC subunit C low > 70
Sinorhizobium meliloti 1021 0.29 SMc01877 DNA repair protein 0.32 SMc00602 excinuclease ABC subunit C 0.62 8
Magnetospirillum magneticum AMB-1 0.29 AMB_RS19520 DNA repair protein RecN 0.31 AMB_RS19240 UvrABC system protein C — —
Agrobacterium fabrum C58 0.28 Atu2083 DNA repair protein RecN 0.32 Atu1129 excinuclease ABC chain C 0.32 28
Azospirillum sp. SherDot2 0.27 MPMX19_01601 DNA repair protein RecN 0.32 MPMX19_01070 UvrABC system protein C low > 112
Sphingomonas koreensis DSMZ 15582 0.27 Ga0059261_1026 DNA repair protein RecN 0.30 Ga0059261_3186 Excinuclease ABC subunit C 0.43 6
Azospirillum brasilense Sp245 0.26 AZOBR_RS12395 DNA repair protein RecN 0.31 AZOBR_RS08965 excinuclease ABC subunit C — —
Fusobacterium nucleatum SB010 0.25 HUW76_08055 DNA repair protein RecN 0.21 HUW76_06695 excinuclease ABC subunit UvrC low > 35
Parabacteroides merdae CL09T00C40 0.25 HMPREF1078_RS02000 DNA repair protein RecN 0.21 HMPREF1078_RS06310 excinuclease ABC subunit UvrC low > 61
Rhodospirillum rubrum S1H 0.25 Rru_A0940 DNA repair protein RecN (NCBI) 0.33 Rru_A2220 Excinuclease ABC, C subunit (NCBI) — —
Bacteroides stercoris CC31F 0.24 HMPREF1181_RS10900 DNA repair protein RecN 0.21 HMPREF1181_RS02095 excinuclease ABC subunit UvrC low > 56
Rhodopseudomonas palustris CGA009 0.24 TX73_018240 DNA repair protein RecN 0.31 TX73_006010 excinuclease ABC subunit UvrC low > 86
Caulobacter crescentus NA1000 Δfur 0.23 CCNA_02062 DNA repair protein recN 0.29 CCNA_02975 excinuclease ABC subunit C low > 67
Caulobacter crescentus NA1000 0.23 CCNA_02062 DNA repair protein recN 0.29 CCNA_02975 excinuclease ABC subunit C 0.84 4
Phaeobacter inhibens DSM 17395 0.23 PGA1_c09720 DNA repair protein RecN 0.30 PGA1_c02880 uvrABC system protein C 0.56 3
Synechococcus elongatus PCC 7942 0.23 Synpcc7942_1779 recN DNA repair protein RecN 0.22 Synpcc7942_1945 uvrC excinuclease ABC subunit C 0.74 3
Dinoroseobacter shibae DFL-12 0.22 Dshi_2413 DNA repair protein RecN (RefSeq) 0.31 Dshi_0644 excinuclease ABC, C subunit (RefSeq) 0.51 4
Pedobacter sp. GW460-11-11-14-LB5 0.21 CA265_RS14855 DNA repair protein RecN 0.13 CA265_RS18110 excinuclease ABC subunit C 0.83 2
Brevundimonas sp. GW460-12-10-14-LB2 0.21 A4249_RS02620 DNA repair protein RecN 0.29 A4249_RS01670 excinuclease ABC subunit UvrC low > 48
Pontibacter actiniarum KMM 6156, DSM 19842 0.20 CA264_13235 DNA repair protein RecN 0.18 CA264_16350 excinuclease ABC subunit C 0.54 20
Mycobacterium tuberculosis H37Rv 0.20 Rv1696 Probable DNA repair protein RecN (recombination protein N) 0.22 Rv1420 Probable excinuclease ABC (subunit C-nuclease) UvrC low > 58
Desulfovibrio vulgaris Hildenborough JW710 0.20 DVU2463 recN DNA repair protein RecN (TIGR) 0.20 DVU0801 uvrC excinuclease ABC, C subunit (TIGR) low > 55
Bifidobacterium breve UCC2003 0.15 BBR_RS14030 DNA repair protein RecN 0.23 BBR_RS15515 excinuclease ABC subunit UvrC low > 34

Not shown: 9 genomes with orthologs for RR42_RS05910 only; 4 genomes with orthologs for RR42_RS14000 only