Conservation of cofitness between Psyr_0045 and Psyr_0073 in Pseudomonas syringae pv. syringae B728a

103 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas syringae pv. syringae B728a 1.0 Psyr_0045 oligopeptidase A, Metallo peptidase, MEROPS family M03A 1.0 Psyr_0073 Multi antimicrobial extrusion protein MatE 0.44 2
Pseudomonas syringae pv. syringae B728a ΔmexB 1.00 Psyr_0045 oligopeptidase A, Metallo peptidase, MEROPS family M03A 1.00 Psyr_0073 Multi antimicrobial extrusion protein MatE low > 86
Pseudomonas fluorescens SBW25-INTG 0.92 PFLU_RS00240 oligopeptidase A 0.64 PFLU_RS29335 NorM family multidrug efflux MATE transporter low > 109
Pseudomonas fluorescens SBW25 0.92 PFLU_RS00240 oligopeptidase A 0.64 PFLU_RS29335 NorM family multidrug efflux MATE transporter low > 109
Pseudomonas lactucae CFBP13502 0.92 GEMAOFIL_00254 Oligopeptidase A 0.63 GEMAOFIL_05667 Multidrug resistance protein MdtK low > 93
Pseudomonas simiae WCS417 0.91 PS417_00245 oligopeptidase A 0.64 PS417_27660 multidrug transporter low > 88
Pseudomonas fluorescens FW300-N2C3 0.91 AO356_11120 oligopeptidase A 0.70 AO356_12665 MATE family efflux transporter low > 104
Pseudomonas sp. DMC3 0.91 GFF663 Oligopeptidase A 0.70 GFF382 Multidrug resistance protein MdtK low > 89
Pseudomonas fluorescens FW300-N2E2 0.91 Pf6N2E2_4091 Oligopeptidase A (EC 3.4.24.70) 0.70 Pf6N2E2_4400 Multidrug and toxin extrusion (MATE) family efflux pump YdhE/NorM, homolog low > 103
Pseudomonas fluorescens GW456-L13 0.91 PfGW456L13_624 Oligopeptidase A (EC 3.4.24.70) 0.72 PfGW456L13_821 Multidrug and toxin extrusion (MATE) family efflux pump YdhE/NorM, homolog low > 87
Pseudomonas sp. RS175 0.91 PFR28_04699 Oligopeptidase A 0.68 PFR28_04390 Multidrug resistance protein MdtK low > 88
Pseudomonas fluorescens FW300-N2E3 0.91 AO353_10775 oligopeptidase A 0.73 AO353_09110 MATE family efflux transporter low > 101
Pseudomonas sp. SVBP6 0.91 COO64_RS02335 prlC oligopeptidase A 0.65 COO64_RS01350 NorM family multidrug efflux MATE transporter low > 93
Pseudomonas fluorescens FW300-N1B4 0.90 Pf1N1B4_1844 Oligopeptidase A (EC 3.4.24.70) 0.70 Pf1N1B4_2153 Multidrug and toxin extrusion (MATE) family efflux pump YdhE/NorM, homolog low > 87
Pseudomonas sp. BP01 0.89 JOY50_RS21245 prlC oligopeptidase A 0.64 JOY50_RS09165 NorM family multidrug efflux MATE transporter low > 84
Pseudomonas putida KT2440 0.88 PP_0096 oligopeptidase A 0.62 PP_5262 Probable multidrug resistance protein NorM low > 96
Pseudomonas aeruginosa PA14 0.86 IKLFDK_25215 oligopeptidase A 0.56 IKLFDK_26980 NorM family multidrug efflux MATE transporter low > 100
Pseudomonas sp. S08-1 0.82 OH686_12360 Oligopeptidase A 0.60 OH686_13730 Multidrug and toxin extrusion (MATE) family efflux pump YdhE/NorM,-related low > 80
Pseudomonas segetis P6 0.82 MPMX49_00359 Oligopeptidase A 0.65 MPMX49_04548 Multidrug resistance protein MdtK low > 75
Pseudomonas stutzeri RCH2 0.80 Psest_4320 Zn-dependent oligopeptidases 0.23 Psest_2549 putative efflux protein, MATE family low > 67
Shewanella oneidensis MR-1 0.59 SO4699 prlC oligopeptidase A (NCBI ptt file) 0.18 SO2295 MATE efflux family protein (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.59 Shewana3_4051 oligopeptidase A (RefSeq) 0.18 Shewana3_2039 MATE efflux family protein (RefSeq) low > 73
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.59 GFF517 Oligopeptidase A (EC 3.4.24.70) 0.19 GFF3613 Multi antimicrobial extrusion protein (Na(+)/drug antiporter), MATE family of MDR efflux pumps low > 78
Alteromonas macleodii MIT1002 0.59 MIT1002_03633 Oligopeptidase A 0.21 MIT1002_02233 Na(+)/drug antiporter low > 70
Escherichia coli BL21 0.59 ECD_03347 oligopeptidase A 0.19 ECD_01634 multidrug efflux system transporter low > 61
Dickeya dianthicola 67-19 0.59 HGI48_RS00045 oligopeptidase A 0.19 HGI48_RS12700 MATE family efflux transporter low > 71
Escherichia coli ECRC62 0.59 BNILDI_03210 prlC oligopeptidase A 0.19 BNILDI_16670 mdtK multidrug efflux MATE transporter MdtK low > 75
Escherichia coli ECOR38 0.59 HEPCGN_15325 prlC oligopeptidase A 0.19 HEPCGN_05745 mdtK multidrug efflux MATE transporter MdtK low > 88
Escherichia coli BW25113 0.59 b3498 prlC oligopeptidase A (NCBI) 0.19 b1663 mdtK multidrug efflux protein NorM (NCBI) low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.59 OHPLBJKB_00205 Oligopeptidase A 0.19 OHPLBJKB_02061 Multidrug resistance protein MdtK low > 74
Klebsiella michiganensis M5al 0.59 BWI76_RS26610 oligopeptidase A 0.20 BWI76_RS16535 MATE family efflux transporter low > 92
Escherichia coli ECOR27 0.59 NOLOHH_08350 prlC oligopeptidase A 0.19 NOLOHH_17880 mdtK multidrug efflux MATE transporter MdtK low > 76
Escherichia fergusonii Becca 0.59 EFB2_00317 Oligopeptidase A 0.19 EFB2_02329 Multidrug resistance protein MdtK low > 86
Escherichia coli ECRC102 0.59 NIAGMN_14180 prlC oligopeptidase A 0.19 NIAGMN_00705 mdtK multidrug efflux MATE transporter MdtK low > 80
Escherichia coli Nissle 1917 0.59 ECOLIN_RS19985 oligopeptidase A 0.19 ECOLIN_RS09270 multidrug efflux MATE transporter MdtK — —
Escherichia coli ECRC99 0.59 KEDOAH_11730 prlC oligopeptidase A 0.19 KEDOAH_00750 mdtK multidrug efflux MATE transporter MdtK — —
Escherichia coli ECRC101 0.59 MCAODC_06930 prlC oligopeptidase A 0.19 MCAODC_18050 mdtK multidrug efflux MATE transporter MdtK low > 88
Escherichia coli ECRC98 0.59 JDDGAC_20045 prlC oligopeptidase A 0.19 JDDGAC_01950 mdtK multidrug efflux MATE transporter MdtK low > 87
Escherichia coli ECRC100 0.59 OKFHMN_16415 prlC oligopeptidase A 0.19 OKFHMN_27360 mdtK multidrug efflux MATE transporter MdtK low > 79
Enterobacter asburiae PDN3 0.58 EX28DRAFT_4063 Zn-dependent oligopeptidases 0.20 EX28DRAFT_1660 putative efflux protein, MATE family low > 76
Enterobacter sp. TBS_079 0.58 MPMX20_04397 Oligopeptidase A 0.19 MPMX20_01973 Multidrug resistance protein MdtK low > 85
Dickeya dadantii 3937 0.58 DDA3937_RS21265 oligopeptidase A 0.08 DDA3937_RS13645 MATE family efflux transporter low > 74
Dickeya dianthicola ME23 0.58 DZA65_RS00035 oligopeptidase A 0.19 DZA65_RS13155 MATE family efflux transporter 0.62 15
Shewanella loihica PV-4 0.58 Shew_3657 oligopeptidase A (RefSeq) 0.16 Shew_2037 MATE efflux family protein (RefSeq) low > 60
Klebsiella pneumoniae MKP103 0.58 KDGMDA_07425 oligopeptidase A 0.19 KDGMDA_23495 MdtK family multidrug efflux MATE transporter low > 95
Shewanella amazonensis SB2B 0.58 Sama_3546 oligopeptidase A (RefSeq) 0.18 Sama_1761 MATE efflux family protein (RefSeq) low > 62
Erwinia amylovora T8 0.58 OLJFJH_04530 Oligopeptidase A 0.19 OLJFJH_14535 Multidrug resistance protein MdtK low > 58
Vibrio cholerae E7946 ATCC 55056 0.58 CSW01_01010 oligopeptidase A 0.19 CSW01_07735 multidrug resistance protein NorM low > 62
Serratia liquefaciens MT49 0.57 IAI46_24210 oligopeptidase A 0.18 IAI46_11210 MATE family efflux transporter low > 86
Pantoea agglomerans CFBP13505 P0401 0.57 PagCFBP13505_RS17845 oligopeptidase A 0.19 PagCFBP13505_RS17770 MATE family efflux transporter low > 74
Pantoea sp. MT58 0.57 IAI47_01345 oligopeptidase A 0.19 IAI47_10820 MATE family efflux transporter low > 76
Marinobacter adhaerens HP15 0.57 HP15_3759 oligopeptidase A-like protein 0.18 HP15_3913 multidrug resistance protein NorM low > 73
Pectobacterium carotovorum WPP14 0.57 HER17_RS21300 oligopeptidase A 0.17 HER17_RS09220 MATE family efflux transporter low > 75
Erwinia tracheiphila HP pepo 2.2 0.57 IJEDHG_12590 prlC oligopeptidase A 0.17 IJEDHG_25190 MATE family efflux transporter low > 61
Erwinia tracheiphila SCR3 0.57 LU632_RS19470 prlC oligopeptidase A 0.17 LU632_RS11170 MATE family efflux transporter low > 74
Rahnella sp. WP5 0.56 EX31_RS05165 oligopeptidase A 0.18 EX31_RS13855 MATE family efflux transporter low > 89
Kangiella aquimarina DSM 16071 0.56 B158DRAFT_0457 Zn-dependent oligopeptidases 0.17 B158DRAFT_2495 putative efflux protein, MATE family low > 40
Herbaspirillum seropedicae SmR1 0.50 HSERO_RS07290 oligopeptidase A 0.12 HSERO_RS04300 multidrug transporter MatE low > 78
Acinetobacter baumannii LAC-4 0.49 RR41_RS02340 M3 family metallopeptidase 0.20 RR41_RS17025 multidrug efflux MATE transporter AbeM low > 55
Dyella japonica UNC79MFTsu3.2 0.49 ABZR86_RS14940 M3 family metallopeptidase 0.22 ABZR86_RS12525 MATE family efflux transporter low > 74
Acinetobacter radioresistens SK82 0.48 MPMX26_02685 Oligopeptidase A 0.19 MPMX26_00306 Multidrug resistance protein NorM low > 36
Dechlorosoma suillum PS 0.48 Dsui_0046 Zn-dependent oligopeptidase 0.12 Dsui_1442 putative efflux protein, MATE family low > 51
Rhodanobacter sp. FW510-T8 0.48 OKGIIK_15380 dcp oligopeptidase A 0.22 OKGIIK_12790 norM MATE family efflux transporter low > 53
Xanthomonas campestris pv. campestris strain 8004 0.48 Xcc-8004.4539.1 Oligopeptidase A (EC 3.4.24.70) 0.16 Xcc-8004.4760.1 Multidrug and toxin extrusion (MATE) family efflux pump YdhE/NorM low > 74
Paraburkholderia sabiae LMG 24235 0.48 QEN71_RS05695 M3 family metallopeptidase 0.27 QEN71_RS04380 MATE family efflux transporter low > 153
Rhodanobacter sp000427505 FW510-R12 0.47 LRK53_RS02390 M3 family metallopeptidase 0.23 LRK53_RS03980 MATE family efflux transporter low > 59
Cupriavidus basilensis FW507-4G11 0.47 RR42_RS07340 oligopeptidase A 0.13 RR42_RS13335 multidrug transporter MatE low > 128
Rhodanobacter denitrificans MT42 0.47 LRK55_RS08380 M3 family metallopeptidase 0.22 LRK55_RS10790 MATE family efflux transporter low > 63
Rhodanobacter denitrificans FW104-10B01 0.47 LRK54_RS08615 M3 family metallopeptidase 0.22 LRK54_RS11085 MATE family efflux transporter low > 59
Burkholderia phytofirmans PsJN 0.46 BPHYT_RS12875 oligopeptidase A 0.28 BPHYT_RS14600 multidrug transporter MatE low > 109
Ralstonia solanacearum UW163 0.46 UW163_RS15000 oligopeptidase A 0.15 UW163_RS12570 MATE family efflux transporter — —
Ralstonia solanacearum IBSBF1503 0.46 RALBFv3_RS01690 oligopeptidase A 0.15 RALBFv3_RS15100 MATE family efflux transporter low > 76
Paraburkholderia graminis OAS925 0.46 ABIE53_002798 oligopeptidase A 0.28 ABIE53_003081 MATE family multidrug resistance protein low > 113
Ralstonia sp. UNC404CL21Col 0.46 ABZR87_RS13490 M3 family metallopeptidase 0.14 ABZR87_RS10730 MATE family efflux transporter low > 80
Ralstonia solanacearum GMI1000 0.46 RS_RS08035 oligopeptidase A 0.15 RS_RS05915 MATE family efflux transporter low > 80
Variovorax sp. OAS795 0.46 ABID97_RS14080 M3 family metallopeptidase 0.11 ABID97_RS14630 MATE family efflux transporter low > 91
Ralstonia solanacearum PSI07 0.46 RPSI07_RS15795 oligopeptidase A 0.14 RPSI07_RS18275 MATE family efflux transporter low > 81
Variovorax sp. SCN45 0.45 GFF963 Oligopeptidase A (EC 3.4.24.70) 0.10 GFF1099 Na+-driven multidrug efflux pump low > 127
Paraburkholderia bryophila 376MFSha3.1 0.45 H281DRAFT_00461 oligopeptidase A Metallo peptidase. MEROPS family M03A 0.27 H281DRAFT_04317 multidrug resistance protein, MATE family low > 103
Acidovorax sp. GW101-3H11 0.44 Ac3H11_4097 Oligopeptidase A (EC 3.4.24.70) 0.11 Ac3H11_463 Multidrug and toxin extrusion (MATE) family efflux pump YdhE/NorM, homolog low > 79
Castellaniella sp019104865 MT123 0.42 ABCV34_RS04180 M3 family metallopeptidase 0.12 ABCV34_RS00895 MATE family efflux transporter low > 48
Synechocystis sp000284455 PCC 6803 0.41 SGL_RS17300 M3 family metallopeptidase 0.26 SGL_RS14765 MATE family efflux transporter low > 52
Echinicola vietnamensis KMM 6221, DSM 17526 0.34 Echvi_2572 Zn-dependent oligopeptidases 0.23 Echvi_2195 putative efflux protein, MATE family low > 79
Cellulophaga baltica 18 0.33 M666_RS01280 M3 family metallopeptidase 0.19 M666_RS10435 MATE family efflux transporter low > 67
Phocaeicola vulgatus CL09T03C04 0.32 HMPREF1058_RS17165 M3 family metallopeptidase 0.14 HMPREF1058_RS02770 MATE family efflux transporter low > 67
Phocaeicola dorei CL03T12C01 0.31 ABI39_RS13165 M3 family metallopeptidase 0.15 ABI39_RS02110 MATE family efflux transporter low > 72
Bacteroides stercoris CC31F 0.31 HMPREF1181_RS06150 M3 family metallopeptidase 0.14 HMPREF1181_RS00200 MATE family efflux transporter low > 56
Bacteroides ovatus ATCC 8483 0.30 BACOVA_05095 peptidase family M3 0.12 BACOVA_03650 MATE efflux family protein low > 96
Bacteroides thetaiotaomicron VPI-5482 0.30 BT2834 peptidyl-dipeptidase (NCBI ptt file) 0.15 BT3804 putative transport protein, multidrug efflux protein (NCBI ptt file) low > 81
Sinorhizobium meliloti 1021 0.28 SMc04403 peptidyl-dipeptidase A protein 0.23 SMc01211 hypothetical protein low > 103
Agrobacterium fabrum C58 0.28 Atu2664 peptidyl-dipeptidase 0.24 Atu2172 multidrug efflux protein low > 89
Rhizobium sp. OAE497 0.28 ABIE40_RS18135 M3 family metallopeptidase 0.23 ABIE40_RS12780 MATE family efflux transporter low > 107
Parabacteroides merdae CL09T00C40 0.27 HMPREF1078_RS14650 M3 family metallopeptidase 0.13 HMPREF1078_RS10360 MATE family efflux transporter low > 61
Rhodopseudomonas palustris CGA009 0.27 TX73_004495 M3 family metallopeptidase 0.23 TX73_004890 MATE family efflux transporter low > 86
Azospirillum brasilense Sp245 0.26 AZOBR_RS23485 peptidase M3 0.11 AZOBR_RS15325 multidrug transporter low > 97
Mucilaginibacter yixingensis YX-36 DSM 26809 0.26 ABZR88_RS16390 peptidyl-dipeptidase Dcp 0.19 ABZR88_RS09785 MATE family efflux transporter 0.44 41
Phaeobacter inhibens DSM 17395 0.25 PGA1_c26590 peptidyl-dipeptidase Dcp 0.22 PGA1_c21310 multidrug resistance protein NorM low > 62
Bosea sp. OAE506 0.25 ABIE41_RS12985 M3 family metallopeptidase 0.24 ABIE41_RS08515 MATE family efflux transporter low > 77
Caulobacter crescentus NA1000 Δfur 0.23 CCNA_03816 peptidyl-dipeptidase DCP 0.09 CCNA_02099 Na+ driven multidrug efflux pump low > 67
Caulobacter crescentus NA1000 0.23 CCNA_03816 peptidyl-dipeptidase DCP 0.09 CCNA_02099 Na+ driven multidrug efflux pump low > 66
Dinoroseobacter shibae DFL-12 0.23 Dshi_2973 Peptidyl-dipeptidase Dcp (RefSeq) 0.23 Dshi_0755 MATE efflux family protein (RefSeq) low > 64
Brevundimonas sp. GW460-12-10-14-LB2 0.21 A4249_RS12525 M3 family metallopeptidase 0.14 A4249_RS03825 MATE family efflux transporter low > 48
Lysobacter sp. OAE881 0.21 ABIE51_RS09155 M3 family metallopeptidase 0.13 ABIE51_RS02170 MATE family efflux transporter 0.66 57
Pontibacter actiniarum KMM 6156, DSM 19842 0.20 CA264_01885 peptidase M3 0.25 CA264_06370 MATE family efflux transporter low > 74

Not shown: 3 genomes with orthologs for Psyr_0045 only; 8 genomes with orthologs for Psyr_0073 only