Conservation of cofitness between Pf6N2E2_5594 and Pf6N2E2_3370 in Pseudomonas fluorescens FW300-N2E2

94 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas fluorescens FW300-N2E2 1.0 Pf6N2E2_5594 Endonuclease III (EC 4.2.99.18) 1.0 Pf6N2E2_3370 DNA repair protein RecN 0.32 10
Pseudomonas fluorescens FW300-N2C3 0.99 AO356_18345 endonuclease III 0.98 AO356_07510 DNA repair protein RecN low > 104
Pseudomonas sp. RS175 0.98 PFR28_03349 Endonuclease III 0.94 PFR28_00071 DNA repair protein RecN low > 88
Pseudomonas fluorescens FW300-N1B4 0.97 Pf1N1B4_739 Endonuclease III (EC 4.2.99.18) 0.94 Pf1N1B4_1178 DNA repair protein RecN low > 87
Pseudomonas fluorescens FW300-N2E3 0.96 AO353_04085 endonuclease III 0.92 AO353_05660 DNA repair protein RecN low > 101
Pseudomonas fluorescens GW456-L13 0.96 PfGW456L13_1753 Endonuclease III (EC 4.2.99.18) 0.94 PfGW456L13_5106 DNA repair protein RecN low > 87
Pseudomonas fluorescens SBW25 0.95 PFLU_RS05740 endonuclease III 0.91 PFLU_RS25910 DNA repair protein RecN low > 109
Pseudomonas fluorescens SBW25-INTG 0.95 PFLU_RS05740 endonuclease III 0.91 PFLU_RS25910 DNA repair protein RecN low > 109
Pseudomonas simiae WCS417 0.95 PS417_05655 endonuclease III 0.91 PS417_24070 recombination and repair protein low > 88
Pseudomonas putida KT2440 0.93 PP_1092 DNA glycosylase/apyrimidinic (AP) lyase specific for damaged pyrimidinic sites 0.83 PP_4729 factor used in recombination and DNA repair low > 96
Pseudomonas sp. S08-1 0.92 OH686_03910 endonuclease III 0.83 OH686_17050 DNA repair protein RecN low > 80
Pseudomonas syringae pv. syringae B728a ΔmexB 0.91 Psyr_3888 endonuclease III / DNA-(apurinic or apyrimidinic site) lyase 0.87 Psyr_4197 DNA replication and repair protein RecN low > 86
Pseudomonas syringae pv. syringae B728a 0.91 Psyr_3888 endonuclease III / DNA-(apurinic or apyrimidinic site) lyase 0.87 Psyr_4197 DNA replication and repair protein RecN low > 86
Pseudomonas stutzeri RCH2 0.89 Psest_3118 endonuclease III 0.80 Psest_0962 DNA repair protein RecN 0.25 51
Marinobacter adhaerens HP15 0.81 HP15_1285 endonuclease III 0.51 HP15_3084 DNA repair protein RecN 0.19 70
Kangiella aquimarina DSM 16071 0.80 B158DRAFT_2365 DNA-(apurinic or apyrimidinic site) lyase (EC 4.2.99.18)/endonuclease III (EC 3.2.2.-) 0.41 B158DRAFT_0601 DNA replication and repair protein RecN low > 40
Escherichia coli ECRC100 0.75 OKFHMN_27525 nth endonuclease III 0.40 OKFHMN_21145 recN DNA repair protein RecN low > 80
Escherichia coli ECRC98 0.75 JDDGAC_02115 nth endonuclease III 0.40 JDDGAC_24810 recN DNA repair protein RecN low > 86
Escherichia coli ECRC99 0.75 KEDOAH_00580 nth endonuclease III 0.40 KEDOAH_07075 recN DNA repair protein RecN — —
Escherichia coli ECRC101 0.75 MCAODC_17885 nth endonuclease III 0.40 MCAODC_11670 recN DNA repair protein RecN low > 87
Escherichia coli ECRC102 0.75 NIAGMN_00540 nth endonuclease III 0.40 NIAGMN_18915 recN DNA repair protein RecN — —
Escherichia coli BW25113 0.75 b1633 nth DNA glycosylase and apyrimidinic (AP) lyase (endonuclease III) (NCBI) 0.40 b2616 recN recombination and repair protein (NCBI) low > 76
Escherichia coli BL21 0.75 ECD_01603 DNA glycosylase and apyrimidinic (AP) lyase (endonuclease III) 0.39 ECD_02504 recombination and repair protein — —
Escherichia coli ECOR38 0.75 HEPCGN_05910 nth endonuclease III 0.40 HEPCGN_20265 recN DNA repair protein RecN low > 87
Escherichia coli ECOR27 0.75 NOLOHH_18045 nth endonuclease III 0.40 NOLOHH_12815 recN DNA repair protein RecN — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.75 GFF3641 Endonuclease III (EC 4.2.99.18) 0.40 GFF4162 DNA repair protein RecN low > 78
Escherichia coli HS(pFamp)R (ATCC 700891) 0.75 OHPLBJKB_02093 Endonuclease III 0.40 OHPLBJKB_01091 DNA repair protein RecN low > 73
Escherichia coli ECRC62 0.75 BNILDI_16835 nth endonuclease III 0.40 BNILDI_11620 recN DNA repair protein RecN low > 75
Escherichia fergusonii Becca 0.75 EFB2_02359 Endonuclease III 0.40 EFB2_01277 DNA repair protein RecN low > 86
Escherichia coli Nissle 1917 0.75 ECOLIN_RS09110 endonuclease III 0.40 ECOLIN_RS14775 DNA repair protein RecN — —
Klebsiella michiganensis M5al 0.74 BWI76_RS16385 endonuclease III 0.40 BWI76_RS21560 DNA repair protein RecN — —
Pectobacterium carotovorum WPP14 0.74 HER17_RS10860 endonuclease III 0.40 HER17_RS17420 DNA repair protein RecN low > 75
Pantoea sp. MT58 0.74 IAI47_10475 endonuclease III 0.42 IAI47_04810 DNA repair protein RecN low > 76
Herbaspirillum seropedicae SmR1 0.74 HSERO_RS08070 endonuclease IV 0.37 HSERO_RS03060 DNA repair protein low > 78
Serratia liquefaciens MT49 0.74 IAI46_11455 endonuclease III 0.43 IAI46_19635 DNA repair protein RecN low > 86
Erwinia tracheiphila SCR3 0.74 LU632_RS11305 nth endonuclease III 0.38 LU632_RS16985 recN DNA repair protein RecN low > 74
Enterobacter asburiae PDN3 0.74 EX28DRAFT_1629 DNA-(apurinic or apyrimidinic site) lyase (EC 4.2.99.18)/endonuclease III (EC 3.2.2.-) 0.39 EX28DRAFT_2719 DNA repair protein RecN low > 76
Enterobacter sp. TBS_079 0.74 MPMX20_02005 Endonuclease III 0.39 MPMX20_03486 DNA repair protein RecN low > 85
Shewanella oneidensis MR-1 0.74 SO2514 nth endonuclease III (NCBI ptt file) 0.43 SO3462 recN DNA repair protein RecN (NCBI ptt file) low > 76
Rahnella sp. WP5 0.73 EX31_RS06590 endonuclease III 0.42 EX31_RS21760 DNA repair protein RecN low > 89
Shewanella amazonensis SB2B 0.73 Sama_1836 endonuclease III (RefSeq) 0.45 Sama_1026 recombination and repair protein (RefSeq) low > 62
Vibrio cholerae E7946 ATCC 55056 0.73 CSW01_05145 endonuclease III 0.42 CSW01_04395 DNA repair protein RecN low > 62
Dickeya dianthicola ME23 0.72 DZA65_RS11025 endonuclease III 0.39 DZA65_RS04235 DNA repair protein RecN low > 75
Acinetobacter radioresistens SK82 0.72 MPMX26_02306 Endonuclease III 0.32 MPMX26_00239 DNA repair protein RecN low > 36
Shewanella sp. ANA-3 0.72 Shewana3_2174 DNA-(apurinic or apyrimidinic site) lyase / endonuclease III (RefSeq) 0.43 Shewana3_1104 recombination and repair protein (RefSeq) low > 73
Rhodanobacter denitrificans MT42 0.72 LRK55_RS01640 endonuclease III 0.37 LRK55_RS17815 DNA repair protein RecN low > 63
Dickeya dianthicola 67-19 0.72 HGI48_RS10545 endonuclease III 0.39 HGI48_RS04320 DNA repair protein RecN low > 71
Rhodanobacter denitrificans FW104-10B01 0.72 LRK54_RS01850 endonuclease III 0.37 LRK54_RS17960 DNA repair protein RecN low > 59
Cupriavidus basilensis FW507-4G11 0.71 RR42_RS05970 endonuclease III 0.35 RR42_RS05910 DNA repair protein low > 128
Dechlorosoma suillum PS 0.71 Dsui_2985 endonuclease III 0.36 Dsui_3072 DNA repair protein RecN low > 51
Dickeya dadantii 3937 0.71 DDA3937_RS10545 endonuclease III 0.40 DDA3937_RS04325 DNA repair protein RecN low > 74
Dyella japonica UNC79MFTsu3.2 0.71 ABZR86_RS08185 endonuclease III 0.38 ABZR86_RS05665 DNA repair protein RecN low > 74
Rhodanobacter sp. FW510-T8 0.71 OKGIIK_04675 nth endonuclease III 0.38 OKGIIK_07340 recN DNA repair protein RecN low > 52
Ralstonia solanacearum PSI07 0.70 RPSI07_RS19265 endonuclease III 0.35 RPSI07_RS11890 DNA repair protein RecN low > 81
Shewanella loihica PV-4 0.70 Shew_2072 endonuclease III (RefSeq) 0.44 Shew_1196 recombination and repair protein (RefSeq) low > 60
Xanthomonas campestris pv. campestris strain 8004 0.70 Xcc-8004.3350.1 Endonuclease III (EC 4.2.99.18) 0.39 Xcc-8004.3431.1 DNA repair protein RecN low > 74
Ralstonia sp. UNC404CL21Col 0.70 ABZR87_RS09915 endonuclease III 0.35 ABZR87_RS01065 DNA repair protein RecN low > 80
Ralstonia solanacearum GMI1000 0.70 RS_RS04975 endonuclease III 0.35 RS_RS13275 DNA repair protein RecN low > 80
Ralstonia solanacearum UW163 0.70 UW163_RS11660 endonuclease III 0.35 UW163_RS08210 DNA repair protein RecN — —
Ralstonia solanacearum IBSBF1503 0.70 RALBFv3_RS14195 endonuclease III 0.35 RALBFv3_RS05415 DNA repair protein RecN low > 76
Variovorax sp. SCN45 0.69 GFF418 Endonuclease III (EC 4.2.99.18) 0.32 GFF2357 DNA repair protein RecN low > 127
Paraburkholderia sabiae LMG 24235 0.69 QEN71_RS24560 endonuclease III 0.35 QEN71_RS26535 DNA repair protein RecN low > 153
Paraburkholderia graminis OAS925 0.68 ABIE53_001423 endonuclease-3 0.32 ABIE53_000856 DNA repair protein RecN (Recombination protein N) low > 113
Acidovorax sp. GW101-3H11 0.68 Ac3H11_1010 Endonuclease III (EC 4.2.99.18) 0.35 Ac3H11_3460 DNA repair protein RecN low > 79
Paraburkholderia bryophila 376MFSha3.1 0.68 H281DRAFT_00293 DNA-(apurinic or apyrimidinic site) lyase /endonuclease III 0.32 H281DRAFT_04692 DNA replication and repair protein RecN low > 103
Castellaniella sp019104865 MT123 0.67 ABCV34_RS08465 endonuclease III 0.33 ABCV34_RS07470 DNA repair protein RecN low > 48
Burkholderia phytofirmans PsJN 0.67 BPHYT_RS06080 endonuclease IV 0.32 BPHYT_RS03560 DNA repair protein low > 109
Lysobacter sp. OAE881 0.67 ABIE51_RS07560 endonuclease III 0.37 ABIE51_RS11655 DNA repair protein RecN low > 62
Hydrogenophaga sp. GW460-11-11-14-LB1 0.67 GFF4003 Endonuclease III (EC 4.2.99.18) 0.32 GFF829 DNA repair protein RecN low > 90
Azospirillum sp. SherDot2 0.63 MPMX19_02500 Endonuclease III 0.28 MPMX19_01601 DNA repair protein RecN low > 112
Azospirillum brasilense Sp245 0.62 AZOBR_RS01565 endonuclease III 0.28 AZOBR_RS12395 DNA repair protein RecN — —
Bosea sp. OAE506 0.59 ABIE41_RS03410 endonuclease III 0.27 ABIE41_RS12645 DNA repair protein RecN low > 77
Sphingomonas koreensis DSMZ 15582 0.59 Ga0059261_2546 DNA-(apurinic or apyrimidinic site) lyase (EC 4.2.99.18)/endonuclease III (EC 3.2.2.-) 0.27 Ga0059261_1026 DNA repair protein RecN low > 68
Magnetospirillum magneticum AMB-1 0.58 AMB_RS21105 endonuclease III 0.28 AMB_RS19520 DNA repair protein RecN — —
Rhodospirillum rubrum S1H 0.58 Rru_A0153 Endonuclease III/Nth (NCBI) 0.25 Rru_A0940 DNA repair protein RecN (NCBI) — —
Dinoroseobacter shibae DFL-12 0.57 Dshi_3023 endonuclease III (RefSeq) 0.24 Dshi_2413 DNA repair protein RecN (RefSeq) low > 64
Phaeobacter inhibens DSM 17395 0.56 PGA1_c29040 endonuclease III 0.25 PGA1_c09720 DNA repair protein RecN low > 62
Brevundimonas sp. GW460-12-10-14-LB2 0.54 A4249_RS15000 endonuclease III 0.22 A4249_RS02620 DNA repair protein RecN low > 48
Caulobacter crescentus NA1000 Δfur 0.53 CCNA_03847 endonuclease III 0.23 CCNA_02062 DNA repair protein recN low > 67
Caulobacter crescentus NA1000 0.53 CCNA_03847 endonuclease III 0.23 CCNA_02062 DNA repair protein recN low > 66
Phocaeicola vulgatus CL09T03C04 0.46 HMPREF1058_RS15245 endonuclease III 0.28 HMPREF1058_RS18225 DNA repair protein RecN low > 67
Phocaeicola dorei CL03T12C01 0.45 ABI39_RS11275 endonuclease III 0.28 ABI39_RS14500 DNA repair protein RecN low > 72
Pontibacter actiniarum KMM 6156, DSM 19842 0.45 CA264_14955 endonuclease III 0.27 CA264_13235 DNA repair protein RecN low > 74
Echinicola vietnamensis KMM 6221, DSM 17526 0.44 Echvi_1263 endonuclease III 0.26 Echvi_2067 DNA repair protein RecN low > 79
Bacteroides ovatus ATCC 8483 0.44 BACOVA_04414 endonuclease III 0.29 BACOVA_00200 DNA repair protein RecN 0.41 49
Bacteroides stercoris CC31F 0.44 HMPREF1181_RS05445 endonuclease III 0.28 HMPREF1181_RS10900 DNA repair protein RecN low > 56
Mucilaginibacter yixingensis YX-36 DSM 26809 0.43 ABZR88_RS16725 endonuclease III 0.27 ABZR88_RS06580 DNA repair protein RecN low > 71
Bacteroides thetaiotaomicron VPI-5482 0.42 BT1671 endonuclease III (NCBI ptt file) 0.29 BT1361 DNA repair protein recN (Recombination protein N) (NCBI ptt file) 0.18 53
Parabacteroides merdae CL09T00C40 0.41 HMPREF1078_RS09755 endonuclease III 0.30 HMPREF1078_RS02000 DNA repair protein RecN low > 61
Fusobacterium nucleatum SB010 0.40 HUW76_00260 endonuclease III 0.25 HUW76_08055 DNA repair protein RecN low > 35
Pedobacter sp. GW460-11-11-14-LB5 0.40 CA265_RS00605 endonuclease III 0.27 CA265_RS14855 DNA repair protein RecN low > 88
Synechococcus elongatus PCC 7942 0.32 Synpcc7942_0447 nth DNA-(apurinic or apyrimidinic site) lyase / endonuclease III 0.23 Synpcc7942_1779 recN DNA repair protein RecN low > 38
Alteromonas macleodii MIT1002 0.32 MIT1002_01251 Endonuclease III 0.39 MIT1002_01443 Recombination protein N low > 70
Bifidobacterium breve UCC2003 0.30 BBR_RS11790 endonuclease III 0.15 BBR_RS14030 DNA repair protein RecN low > 34
Mycobacterium tuberculosis H37Rv 0.30 Rv3674c Probable endonuclease III Nth (DNA-(apurinic or apyrimidinic site)lyase) (AP lyase) (AP endonuclease class I) (endodeoxyribonuclease (apurinic or apyrimidinic)) (deoxyribonuclease (apurinic or apyrimidinic)) 0.20 Rv1696 Probable DNA repair protein RecN (recombination protein N) low > 58

Not shown: 1 genomes with orthologs for Pf6N2E2_5594 only; 5 genomes with orthologs for Pf6N2E2_3370 only