Conservation of cofitness between Pf6N2E2_5594 and Pf6N2E2_2325 in Pseudomonas fluorescens FW300-N2E2

94 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas fluorescens FW300-N2E2 1.0 Pf6N2E2_5594 Endonuclease III (EC 4.2.99.18) 1.0 Pf6N2E2_2325 Recombination protein RecR 0.31 12
Pseudomonas fluorescens FW300-N2C3 0.99 AO356_18345 endonuclease III 0.97 AO356_02495 recombination protein RecR low > 104
Pseudomonas sp. RS175 0.98 PFR28_03349 Endonuclease III 0.95 PFR28_01077 Recombination protein RecR low > 88
Pseudomonas fluorescens FW300-N1B4 0.97 Pf1N1B4_739 Endonuclease III (EC 4.2.99.18) 0.94 Pf1N1B4_3864 Recombination protein RecR 0.40 19
Pseudomonas fluorescens FW300-N2E3 0.96 AO353_04085 endonuclease III 0.95 AO353_00675 recombination protein RecR low > 101
Pseudomonas fluorescens GW456-L13 0.96 PfGW456L13_1753 Endonuclease III (EC 4.2.99.18) 0.94 PfGW456L13_4074 Recombination protein RecR 0.25 70
Pseudomonas fluorescens SBW25 0.95 PFLU_RS05740 endonuclease III 0.93 PFLU_RS22415 recombination protein RecR low > 109
Pseudomonas fluorescens SBW25-INTG 0.95 PFLU_RS05740 endonuclease III 0.93 PFLU_RS22415 recombination protein RecR low > 109
Pseudomonas simiae WCS417 0.95 PS417_05655 endonuclease III 0.93 PS417_20800 recombination protein RecR low > 88
Pseudomonas putida KT2440 0.93 PP_1092 DNA glycosylase/apyrimidinic (AP) lyase specific for damaged pyrimidinic sites 0.89 PP_4267 Recombination protein RecR 0.14 26
Pseudomonas sp. S08-1 0.92 OH686_03910 endonuclease III 0.83 OH686_02385 recombination protein RecR low > 80
Pseudomonas syringae pv. syringae B728a ΔmexB 0.91 Psyr_3888 endonuclease III / DNA-(apurinic or apyrimidinic site) lyase 0.89 Psyr_3396 DNA replication and repair protein RecR low > 86
Pseudomonas syringae pv. syringae B728a 0.91 Psyr_3888 endonuclease III / DNA-(apurinic or apyrimidinic site) lyase 0.89 Psyr_3396 DNA replication and repair protein RecR low > 86
Pseudomonas stutzeri RCH2 0.89 Psest_3118 endonuclease III 0.84 Psest_2545 recombination protein RecR low > 67
Marinobacter adhaerens HP15 0.81 HP15_1285 endonuclease III 0.60 HP15_1883 recombination protein RecR — —
Kangiella aquimarina DSM 16071 0.80 B158DRAFT_2365 DNA-(apurinic or apyrimidinic site) lyase (EC 4.2.99.18)/endonuclease III (EC 3.2.2.-) 0.59 B158DRAFT_2480 DNA replication and repair protein RecR low > 40
Escherichia coli ECRC102 0.75 NIAGMN_00540 nth endonuclease III 0.61 NIAGMN_06210 recR recombination mediator RecR — —
Escherichia coli ECRC101 0.75 MCAODC_17885 nth endonuclease III 0.61 MCAODC_27380 recR recombination mediator RecR 0.55 49
Escherichia coli ECRC99 0.75 KEDOAH_00580 nth endonuclease III 0.61 KEDOAH_19810 recR recombination mediator RecR — —
Escherichia coli ECRC98 0.75 JDDGAC_02115 nth endonuclease III 0.61 JDDGAC_11805 recR recombination mediator RecR low > 86
Escherichia coli ECRC100 0.75 OKFHMN_27525 nth endonuclease III 0.61 OKFHMN_08155 recR recombination mediator RecR low > 80
Escherichia coli BW25113 0.75 b1633 nth DNA glycosylase and apyrimidinic (AP) lyase (endonuclease III) (NCBI) 0.61 b0472 recR recombination protein RecR (NCBI) low > 76
Escherichia coli BL21 0.75 ECD_01603 DNA glycosylase and apyrimidinic (AP) lyase (endonuclease III) 0.61 ECD_00423 gap repair protein — —
Escherichia coli ECOR38 0.75 HEPCGN_05910 nth endonuclease III 0.61 HEPCGN_06770 recR recombination mediator RecR low > 87
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.75 GFF3641 Endonuclease III (EC 4.2.99.18) 0.61 GFF4390 Recombination protein RecR low > 78
Escherichia coli ECRC62 0.75 BNILDI_16835 nth endonuclease III 0.61 BNILDI_22505 recR recombination mediator RecR low > 75
Escherichia coli ECOR27 0.75 NOLOHH_18045 nth endonuclease III 0.61 NOLOHH_01085 recR recombination mediator RecR — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.75 OHPLBJKB_02093 Endonuclease III 0.61 OHPLBJKB_03202 Recombination protein RecR low > 73
Escherichia coli Nissle 1917 0.75 ECOLIN_RS09110 endonuclease III 0.61 ECOLIN_RS02805 recombination mediator RecR — —
Escherichia fergusonii Becca 0.75 EFB2_02359 Endonuclease III 0.61 EFB2_03586 Recombination protein RecR low > 86
Pectobacterium carotovorum WPP14 0.74 HER17_RS10860 endonuclease III 0.61 HER17_RS15695 recombination mediator RecR low > 75
Klebsiella michiganensis M5al 0.74 BWI76_RS16385 endonuclease III 0.61 BWI76_RS06830 recombination protein RecR — —
Pantoea sp. MT58 0.74 IAI47_10475 endonuclease III 0.61 IAI47_14465 recombination protein RecR 0.21 14
Herbaspirillum seropedicae SmR1 0.74 HSERO_RS08070 endonuclease IV 0.49 HSERO_RS18355 recombinase RecR low > 78
Serratia liquefaciens MT49 0.74 IAI46_11455 endonuclease III 0.62 IAI46_05240 recombination protein RecR low > 86
Enterobacter asburiae PDN3 0.74 EX28DRAFT_1629 DNA-(apurinic or apyrimidinic site) lyase (EC 4.2.99.18)/endonuclease III (EC 3.2.2.-) 0.62 EX28DRAFT_2485 DNA replication and repair protein RecR low > 76
Erwinia tracheiphila SCR3 0.74 LU632_RS11305 nth endonuclease III 0.61 LU632_RS18105 recR recombination mediator RecR low > 74
Enterobacter sp. TBS_079 0.74 MPMX20_02005 Endonuclease III 0.62 MPMX20_01074 Recombination protein RecR low > 85
Shewanella oneidensis MR-1 0.74 SO2514 nth endonuclease III (NCBI ptt file) 0.57 SO2015 recR recombination protein RecR (NCBI ptt file) low > 76
Shewanella amazonensis SB2B 0.73 Sama_1836 endonuclease III (RefSeq) 0.56 Sama_1312 recR recombination protein RecR (RefSeq) low > 62
Rahnella sp. WP5 0.73 EX31_RS06590 endonuclease III 0.61 EX31_RS22525 recombination protein RecR low > 89
Vibrio cholerae E7946 ATCC 55056 0.73 CSW01_05145 endonuclease III 0.57 CSW01_05375 recombination protein RecR low > 62
Acinetobacter radioresistens SK82 0.72 MPMX26_02306 Endonuclease III 0.52 MPMX26_01643 Recombination protein RecR low > 36
Shewanella sp. ANA-3 0.72 Shewana3_2174 DNA-(apurinic or apyrimidinic site) lyase / endonuclease III (RefSeq) 0.57 Shewana3_2444 recR recombination protein RecR (RefSeq) low > 73
Dickeya dianthicola ME23 0.72 DZA65_RS11025 endonuclease III 0.60 DZA65_RS06165 recombination protein RecR low > 75
Dickeya dianthicola 67-19 0.72 HGI48_RS10545 endonuclease III 0.60 HGI48_RS05840 recombination protein RecR — —
Rhodanobacter denitrificans FW104-10B01 0.72 LRK54_RS01850 endonuclease III 0.56 LRK54_RS01250 recombination mediator RecR low > 59
Rhodanobacter denitrificans MT42 0.72 LRK55_RS01640 endonuclease III 0.56 LRK55_RS01020 recombination mediator RecR low > 63
Dechlorosoma suillum PS 0.71 Dsui_2985 endonuclease III 0.51 Dsui_1811 recombination protein RecR low > 51
Cupriavidus basilensis FW507-4G11 0.71 RR42_RS05970 endonuclease III 0.50 RR42_RS13270 recombination protein RecR low > 128
Dickeya dadantii 3937 0.71 DDA3937_RS10545 endonuclease III 0.61 DDA3937_RS05790 recombination protein RecR low > 74
Dyella japonica UNC79MFTsu3.2 0.71 ABZR86_RS08185 endonuclease III 0.55 ABZR86_RS06235 recombination mediator RecR low > 74
Rhodanobacter sp. FW510-T8 0.71 OKGIIK_04675 nth endonuclease III 0.56 OKGIIK_05655 recR recombination mediator RecR low > 52
Xanthomonas campestris pv. campestris strain 8004 0.70 Xcc-8004.3350.1 Endonuclease III (EC 4.2.99.18) 0.51 Xcc-8004.4012.1 Recombination protein RecR low > 74
Ralstonia solanacearum PSI07 0.70 RPSI07_RS19265 endonuclease III 0.48 RPSI07_RS18205 recombination protein RecR low > 81
Shewanella loihica PV-4 0.70 Shew_2072 endonuclease III (RefSeq) 0.58 Shew_2233 recombination protein RecR (RefSeq) low > 60
Ralstonia solanacearum GMI1000 0.70 RS_RS04975 endonuclease III 0.48 RS_RS05980 recombination protein RecR low > 80
Ralstonia sp. UNC404CL21Col 0.70 ABZR87_RS09915 endonuclease III 0.51 ABZR87_RS10810 recombination mediator RecR low > 80
Ralstonia solanacearum IBSBF1503 0.70 RALBFv3_RS14195 endonuclease III 0.48 RALBFv3_RS15170 recombination protein RecR low > 76
Ralstonia solanacearum UW163 0.70 UW163_RS11660 endonuclease III 0.48 UW163_RS12640 recombination protein RecR — —
Variovorax sp. SCN45 0.69 GFF418 Endonuclease III (EC 4.2.99.18) 0.50 GFF1110 Recombination protein RecR low > 127
Paraburkholderia sabiae LMG 24235 0.69 QEN71_RS24560 endonuclease III 0.47 QEN71_RS22285 recombination mediator RecR low > 153
Paraburkholderia graminis OAS925 0.68 ABIE53_001423 endonuclease-3 0.47 ABIE53_002048 recombination protein RecR low > 113
Paraburkholderia bryophila 376MFSha3.1 0.68 H281DRAFT_00293 DNA-(apurinic or apyrimidinic site) lyase /endonuclease III 0.47 H281DRAFT_00834 DNA replication and repair protein RecR low > 103
Acidovorax sp. GW101-3H11 0.68 Ac3H11_1010 Endonuclease III (EC 4.2.99.18) 0.42 Ac3H11_473 Recombination protein RecR 0.51 15
Variovorax sp. OAS795 0.67 ABID97_RS17315 endonuclease III 0.48 ABID97_RS14700 recombination mediator RecR low > 91
Castellaniella sp019104865 MT123 0.67 ABCV34_RS08465 endonuclease III 0.45 ABCV34_RS15480 recombination mediator RecR low > 48
Lysobacter sp. OAE881 0.67 ABIE51_RS07560 endonuclease III 0.57 ABIE51_RS14010 recombination mediator RecR low > 62
Burkholderia phytofirmans PsJN 0.67 BPHYT_RS06080 endonuclease IV 0.47 BPHYT_RS09070 recombination protein RecR low > 109
Hydrogenophaga sp. GW460-11-11-14-LB1 0.67 GFF4003 Endonuclease III (EC 4.2.99.18) 0.47 GFF4253 Recombination protein RecR low > 90
Azospirillum sp. SherDot2 0.63 MPMX19_02500 Endonuclease III 0.37 MPMX19_02195 Recombination protein RecR low > 112
Azospirillum brasilense Sp245 0.62 AZOBR_RS01565 endonuclease III 0.38 AZOBR_RS03880 recombinase RecR 0.66 7
Bosea sp. OAE506 0.59 ABIE41_RS03410 endonuclease III 0.34 ABIE41_RS04035 recombination mediator RecR — —
Sphingomonas koreensis DSMZ 15582 0.59 Ga0059261_2546 DNA-(apurinic or apyrimidinic site) lyase (EC 4.2.99.18)/endonuclease III (EC 3.2.2.-) 0.38 Ga0059261_0645 DNA replication and repair protein RecR low > 68
Magnetospirillum magneticum AMB-1 0.58 AMB_RS21105 endonuclease III 0.37 AMB_RS20755 recombination protein RecR low > 64
Rhodospirillum rubrum S1H 0.58 Rru_A0153 Endonuclease III/Nth (NCBI) 0.38 Rru_A3471 RecR protein (NCBI) — —
Dinoroseobacter shibae DFL-12 0.57 Dshi_3023 endonuclease III (RefSeq) 0.34 Dshi_0648 recombination protein RecR (RefSeq) low > 64
Phaeobacter inhibens DSM 17395 0.56 PGA1_c29040 endonuclease III 0.33 PGA1_c30290 recombination protein RecR low > 62
Brevundimonas sp. GW460-12-10-14-LB2 0.54 A4249_RS15000 endonuclease III 0.32 A4249_RS15115 recombination mediator RecR low > 48
Caulobacter crescentus NA1000 Δfur 0.53 CCNA_03847 endonuclease III 0.37 CCNA_00270 Recombination protein recR low > 67
Caulobacter crescentus NA1000 0.53 CCNA_03847 endonuclease III 0.37 CCNA_00270 Recombination protein recR low > 66
Phocaeicola vulgatus CL09T03C04 0.46 HMPREF1058_RS15245 endonuclease III 0.33 HMPREF1058_RS18560 recombination protein RecR low > 67
Phocaeicola dorei CL03T12C01 0.45 ABI39_RS11275 endonuclease III 0.33 ABI39_RS14870 recombination protein RecR low > 72
Pontibacter actiniarum KMM 6156, DSM 19842 0.45 CA264_14955 endonuclease III 0.36 CA264_01105 recombination protein RecR low > 74
Echinicola vietnamensis KMM 6221, DSM 17526 0.44 Echvi_1263 endonuclease III 0.38 Echvi_1987 recombination protein RecR low > 79
Bacteroides stercoris CC31F 0.44 HMPREF1181_RS05445 endonuclease III 0.35 HMPREF1181_RS16455 recombination protein RecR low > 56
Mucilaginibacter yixingensis YX-36 DSM 26809 0.43 ABZR88_RS16725 endonuclease III 0.36 ABZR88_RS10695 recombination mediator RecR 0.58 4
Bacteroides thetaiotaomicron VPI-5482 0.42 BT1671 endonuclease III (NCBI ptt file) 0.35 BT1081 recombination protein recR (NCBI ptt file) low > 81
Parabacteroides merdae CL09T00C40 0.41 HMPREF1078_RS09755 endonuclease III 0.35 HMPREF1078_RS07615 recombination mediator RecR low > 61
Fusobacterium nucleatum SB010 0.40 HUW76_00260 endonuclease III 0.38 HUW76_08785 recombination protein RecR low > 35
Pedobacter sp. GW460-11-11-14-LB5 0.40 CA265_RS00605 endonuclease III 0.35 CA265_RS04980 recombination protein RecR low > 88
Synechococcus elongatus PCC 7942 0.32 Synpcc7942_0447 nth DNA-(apurinic or apyrimidinic site) lyase / endonuclease III 0.38 Synpcc7942_1369 recR recombination protein RecR — —
Alteromonas macleodii MIT1002 0.32 MIT1002_01251 Endonuclease III 0.60 MIT1002_02649 Recombination protein RecR low > 70
Bifidobacterium breve UCC2003 0.30 BBR_RS11790 endonuclease III 0.38 BBR_RS10990 recombination protein RecR low > 34
Mycobacterium tuberculosis H37Rv 0.30 Rv3674c Probable endonuclease III Nth (DNA-(apurinic or apyrimidinic site)lyase) (AP lyase) (AP endonuclease class I) (endodeoxyribonuclease (apurinic or apyrimidinic)) (deoxyribonuclease (apurinic or apyrimidinic)) 0.40 Rv3715c Probable recombination protein RecR low > 58

Not shown: 1 genomes with orthologs for Pf6N2E2_5594 only; 6 genomes with orthologs for Pf6N2E2_2325 only