| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Pseudomonas putida KT2440 | 1.0 | PP_4002 | | DNA-dependent ATPase required for recombination | 1.0 | PP_4722 | | Transcription elongation factor GreA | 0.30 | 4 |
| Pseudomonas fluorescens FW300-N2E3 | 0.93 | AO353_27640 | | recombination factor protein RarA | 0.80 | AO353_05625 | | transcription elongation factor GreA | low | > 101 |
| Pseudomonas sp. RS175 | 0.92 | PFR28_02606 | | Replication-associated recombination protein A | 0.85 | PFR28_00078 | | Transcription elongation factor GreA | — | — |
| Pseudomonas fluorescens FW300-N1B4 | 0.92 | Pf1N1B4_4062 | | FIG065221: Holliday junction DNA helicase | 0.80 | Pf1N1B4_1171 | | Transcription elongation factor GreA | — | — |
| Pseudomonas fluorescens FW300-N2C3 | 0.92 | AO356_22185 | | recombination factor protein RarA | 0.87 | AO356_07475 | | transcription elongation factor GreA | — | — |
| Pseudomonas fluorescens FW300-N2E2 | 0.91 | Pf6N2E2_299 | | FIG065221: Holliday junction DNA helicase | 0.89 | Pf6N2E2_3363 | | Transcription elongation factor GreA | — | — |
| Pseudomonas fluorescens GW456-L13 | 0.91 | PfGW456L13_2653 | | FIG065221: Holliday junction DNA helicase | 0.79 | PfGW456L13_5098 | | Transcription elongation factor GreA | — | — |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.91 | Psyr_3177 | | Recombination protein MgsA | 0.82 | Psyr_4190 | | transcription elongation factor GreA | — | — |
| Pseudomonas syringae pv. syringae B728a | 0.91 | Psyr_3177 | | Recombination protein MgsA | 0.82 | Psyr_4190 | | transcription elongation factor GreA | — | — |
| Pseudomonas simiae WCS417 | 0.91 | PS417_16480 | | recombination factor protein RarA | 0.79 | PS417_24035 | | transcription elongation factor GreA | — | — |
| Pseudomonas fluorescens SBW25 | 0.91 | PFLU_RS18520 | | replication-associated recombination protein A | 0.80 | PFLU_RS25875 | | transcription elongation factor GreA | low | > 109 |
| Pseudomonas fluorescens SBW25-INTG | 0.91 | PFLU_RS18520 | | replication-associated recombination protein A | 0.80 | PFLU_RS25875 | | transcription elongation factor GreA | low | > 109 |
| Pseudomonas sp. S08-1 | 0.88 | OH686_00270 | | Replication-associated recombination protein RarA | 0.81 | OH686_17085 | | Transcription elongation factor GreA | low | > 80 |
| Pseudomonas stutzeri RCH2 | 0.86 | Psest_2034 | | ATPase related to the helicase subunit of the Holliday junction resolvase | 0.77 | Psest_0969 | | transcription elongation factor GreA | low | > 67 |
| Kangiella aquimarina DSM 16071 | 0.68 | B158DRAFT_1819 | | ATPase related to the helicase subunit of the Holliday junction resolvase | 0.58 | B158DRAFT_0617 | | transcription elongation factor GreA | low | > 40 |
| Marinobacter adhaerens HP15 | 0.64 | HP15_1817 | | recombination factor protein RarA | 0.59 | HP15_3076 | | protein containing prokaryotic transcription elongation factor GreA domain | low | > 73 |
| Rahnella sp. WP5 | 0.60 | EX31_RS18515 | | replication-associated recombination protein A | 0.56 | EX31_RS08595 | | transcription elongation factor GreA | low | > 89 |
| Klebsiella michiganensis M5al | 0.60 | BWI76_RS09670 | | recombination factor protein RarA | 0.59 | BWI76_RS25160 | | transcription elongation factor GreA | low | > 92 |
| Enterobacter asburiae PDN3 | 0.60 | EX28DRAFT_2040 | | ATPase related to the helicase subunit of the Holliday junction resolvase | 0.59 | EX28DRAFT_3232 | | transcription elongation factor GreA | low | > 76 |
| Serratia liquefaciens MT49 | 0.59 | IAI46_08570 | | replication-associated recombination protein A | 0.56 | IAI46_01880 | | transcription elongation factor GreA | low | > 86 |
| Shewanella sp. ANA-3 | 0.59 | Shewana3_2052 | | recombination factor protein RarA (RefSeq) | 0.61 | Shewana3_1017 | | transcription elongation factor GreA (RefSeq) | low | > 73 |
| Shewanella loihica PV-4 | 0.59 | Shew_2022 | | recombination factor protein RarA (RefSeq) | 0.61 | Shew_2837 | | transcription elongation factor GreA (RefSeq) | low | > 60 |
| Enterobacter sp. TBS_079 | 0.59 | MPMX20_01554 | | Replication-associated recombination protein A | 0.59 | MPMX20_04085 | | Transcription elongation factor GreA | low | > 85 |
| Vibrio cholerae E7946 ATCC 55056 | 0.59 | CSW01_05630 | | replication-associated recombination protein A | 0.53 | CSW01_03330 | | transcription elongation factor GreA | low | > 62 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.59 | GFF4896 | | FIG065221: Holliday junction DNA helicase | 0.61 | GFF2922 | | Transcription elongation factor GreA | low | > 78 |
| Erwinia tracheiphila SCR3 | 0.59 | LU632_RS09755 | | replication-associated recombination protein A | 0.54 | LU632_RS21165 | greA | transcription elongation factor GreA | low | > 74 |
| Shewanella oneidensis MR-1 | 0.59 | SO2308 | | ATPase, AAA family (NCBI ptt file) | 0.60 | SO1191 | greA | transcription elongation factor GreA (NCBI ptt file) | low | > 76 |
| Escherichia coli ECRC101 | 0.59 | MCAODC_24950 | rarA | replication-associated recombination protein RarA | 0.60 | MCAODC_08565 | greA | transcription elongation factor GreA | — | — |
| Escherichia coli Nissle 1917 | 0.59 | ECOLIN_RS04745 | | replication-associated recombination protein RarA | 0.60 | ECOLIN_RS18320 | | transcription elongation factor GreA | — | — |
| Cupriavidus basilensis FW507-4G11 | 0.59 | RR42_RS04355 | | recombination factor protein RarA | 0.47 | RR42_RS13505 | | transcription elongation factor GreA | — | — |
| Escherichia coli ECOR38 | 0.59 | HEPCGN_22950 | rarA | replication-associated recombination protein RarA | 0.60 | HEPCGN_16920 | greA | transcription elongation factor GreA | — | — |
| Escherichia coli BL21 | 0.59 | ECD_00896 | | recombination intermediate processing DNA-dependent ATPase | 0.60 | ECD_03046 | | transcript cleavage factor | low | > 60 |
| Escherichia fergusonii Becca | 0.59 | EFB2_03169 | | Replication-associated recombination protein A | 0.60 | EFB2_00642 | | Transcription elongation factor GreA | low | > 86 |
| Escherichia coli ECRC98 | 0.59 | JDDGAC_09370 | rarA | replication-associated recombination protein RarA | 0.60 | JDDGAC_21670 | greA | transcription elongation factor GreA | — | — |
| Escherichia coli ECRC102 | 0.59 | NIAGMN_03280 | rarA | replication-associated recombination protein RarA | 0.60 | NIAGMN_15805 | greA | transcription elongation factor GreA | — | — |
| Escherichia coli BW25113 | 0.59 | b0892 | ycaJ | recombination protein (NCBI) | 0.60 | b3181 | greA | transcription elongation factor: cleaves 3' nucleotide of paused mRNA (VIMSS) | low | > 76 |
| Escherichia coli ECOR27 | 0.59 | NOLOHH_22130 | rarA | replication-associated recombination protein RarA | 0.60 | NOLOHH_09845 | greA | transcription elongation factor GreA | — | — |
| Escherichia coli ECRC99 | 0.59 | KEDOAH_22175 | rarA | replication-associated recombination protein RarA | 0.60 | KEDOAH_10105 | greA | transcription elongation factor GreA | — | — |
| Escherichia coli ECRC101 | 0.59 | OKFHMN_05560 | rarA | replication-associated recombination protein RarA | 0.60 | OKFHMN_18045 | greA | transcription elongation factor GreA | — | — |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.59 | OHPLBJKB_02776 | | Replication-associated recombination protein A | 0.60 | OHPLBJKB_00519 | | Transcription elongation factor GreA | low | > 73 |
| Escherichia coli ECRC62 | 0.59 | BNILDI_20385 | rarA | replication-associated recombination protein RarA | 0.60 | BNILDI_01690 | greA | transcription elongation factor GreA | — | — |
| Pantoea sp. MT58 | 0.59 | IAI47_12900 | | replication-associated recombination protein A | 0.58 | IAI47_17080 | | transcription elongation factor GreA | low | > 76 |
| Dickeya dadantii 3937 | 0.58 | DDA3937_RS09605 | | replication-associated recombination protein A | 0.57 | DDA3937_RS03015 | | transcription elongation factor GreA | — | — |
| Dickeya dianthicola 67-19 | 0.58 | HGI48_RS09620 | | replication-associated recombination protein A | 0.57 | HGI48_RS03185 | | transcription elongation factor GreA | low | > 71 |
| Paraburkholderia sabiae LMG 24235 | 0.58 | QEN71_RS03415 | | replication-associated recombination protein A | 0.47 | QEN71_RS04785 | | transcription elongation factor GreA | low | > 153 |
| Dickeya dianthicola ME23 | 0.58 | DZA65_RS09930 | | replication-associated recombination protein A | 0.57 | DZA65_RS03180 | | transcription elongation factor GreA | low | > 75 |
| Ralstonia sp. UNC404CL21Col | 0.58 | ABZR87_RS16030 | | replication-associated recombination protein A | 0.48 | ABZR87_RS14135 | | transcription elongation factor GreA | low | > 80 |
| Paraburkholderia graminis OAS925 | 0.58 | ABIE53_001292 | | putative ATPase | 0.46 | ABIE53_003003 | | transcription elongation factor GreA | low | > 113 |
| Pectobacterium carotovorum WPP14 | 0.58 | HER17_RS12345 | | replication-associated recombination protein A | 0.57 | HER17_RS18330 | | transcription elongation factor GreA | — | — |
| Shewanella amazonensis SB2B | 0.58 | Sama_1774 | | recombination factor protein RarA (RefSeq) | 0.59 | Sama_0951 | | GreA/GreB family elongation factor (RefSeq) | low | > 62 |
| Ralstonia solanacearum PSI07 | 0.58 | RPSI07_RS13205 | | replication-associated recombination protein A | 0.47 | RPSI07_RS15260 | | transcription elongation factor GreA | low | > 81 |
| Burkholderia phytofirmans PsJN | 0.57 | BPHYT_RS05100 | | ATPase AAA | 0.46 | BPHYT_RS14185 | | transcription elongation factor GreA | low | > 109 |
| Ralstonia solanacearum UW163 | 0.57 | UW163_RS09525 | | replication-associated recombination protein A | 0.46 | UW163_RS15495 | | transcription elongation factor GreA | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.57 | RALBFv3_RS04145 | | replication-associated recombination protein A | 0.46 | RALBFv3_RS02185 | | transcription elongation factor GreA | low | > 76 |
| Dechlorosoma suillum PS | 0.56 | Dsui_1694 | | AAA ATPase | 0.49 | Dsui_3063 | | transcription elongation factor GreA | low | > 51 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.56 | H281DRAFT_00180 | | Recombination protein MgsA | 0.46 | H281DRAFT_04404 | | GreA/GreB family elongation factor | low | > 103 |
| Herbaspirillum seropedicae SmR1 | 0.56 | HSERO_RS09515 | | ATPase AAA | 0.48 | HSERO_RS06930 | | transcription elongation factor GreA | — | — |
| Ralstonia solanacearum GMI1000 | 0.56 | RS_RS11735 | | replication-associated recombination protein A | 0.46 | RS_RS07635 | | transcription elongation factor GreA | — | — |
| Castellaniella sp019104865 MT123 | 0.55 | ABCV34_RS07220 | | replication-associated recombination protein A | 0.45 | ABCV34_RS15540 | | transcription elongation factor GreA | low | > 48 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.55 | Xcc-8004.2744.1 | | FIG065221: Holliday junction DNA helicase | 0.52 | Xcc-8004.2911.1 | | Transcription elongation factor GreA | low | > 74 |
| Alteromonas macleodii MIT1002 | 0.54 | MIT1002_02178 | | Replication-associated recombination protein A | 0.60 | MIT1002_01468 | | Transcript cleavage factor GreA | low | > 70 |
| Variovorax sp. SCN45 | 0.54 | GFF6034 | | Replication-associated recombination protein RarA | 0.45 | GFF374 | | Transcription elongation factor GreA | low | > 127 |
| Variovorax sp. OAS795 | 0.54 | ABID97_RS07835 | | replication-associated recombination protein A | 0.45 | ABID97_RS17070 | | transcription elongation factor GreA | low | > 91 |
| Acidovorax sp. GW101-3H11 | 0.53 | Ac3H11_1696 | | FIG065221: Holliday junction DNA helicase | 0.49 | Ac3H11_437 | | Transcription elongation factor GreA | low | > 79 |
| Rhodanobacter sp. FW510-T8 | 0.53 | OKGIIK_07580 | rarA | recombination factor protein RarA | 0.40 | OKGIIK_07290 | greA | transcription elongation factor GreA | low | > 52 |
| Rhodanobacter denitrificans FW104-10B01 | 0.53 | LRK54_RS17320 | | replication-associated recombination protein A | 0.39 | LRK54_RS18005 | | transcription elongation factor GreA | low | > 59 |
| Dyella japonica UNC79MFTsu3.2 | 0.53 | ABZR86_RS01825 | | replication-associated recombination protein A | 0.39 | ABZR86_RS05595 | | transcription elongation factor GreA | low | > 74 |
| Rhodanobacter denitrificans MT42 | 0.53 | LRK55_RS17545 | | replication-associated recombination protein A | 0.39 | LRK55_RS17860 | | transcription elongation factor GreA | low | > 63 |
| Lysobacter sp. OAE881 | 0.52 | ABIE51_RS11445 | | replication-associated recombination protein A | 0.51 | ABIE51_RS11610 | | transcription elongation factor GreA | low | > 62 |
| Azospirillum brasilense Sp245 | 0.48 | AZOBR_RS06885 | | ATPase AAA | 0.46 | AZOBR_RS12900 | | transcription elongation factor GreA | — | — |
| Phaeobacter inhibens DSM 17395 | 0.48 | PGA1_c01930 | | replication-associated recombination protein A | 0.47 | PGA1_c03290 | | transcription elongation factor GreA | low | > 62 |
| Sinorhizobium meliloti 1021 | 0.47 | SMc01279 | | recombination factor protein RarA | 0.45 | SMc01218 | | transcription elongation factor GreA | — | — |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.47 | A4249_RS07890 | | replication-associated recombination protein A | 0.48 | A4249_RS00695 | | transcription elongation factor GreA | — | — |
| Agrobacterium fabrum C58 | 0.47 | Atu1914 | | ATPase, AAA family protein | 0.45 | Atu2182 | | transcription elongation facto | — | — |
| Azospirillum sp. SherDot2 | 0.47 | MPMX19_01528 | | Replication-associated recombination protein A | 0.47 | MPMX19_02300 | | Transcription elongation factor GreA | low | > 112 |
| Magnetospirillum magneticum AMB-1 | 0.46 | AMB_RS17620 | | replication-associated recombination protein A | 0.45 | AMB_RS03610 | | transcription elongation factor GreA | low | > 64 |
| Rhodopseudomonas palustris CGA009 | 0.46 | TX73_016655 | | replication-associated recombination protein A | 0.42 | TX73_021095 | | transcription elongation factor GreA | — | — |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.46 | GFF777 | | FIG065221: Holliday junction DNA helicase | 0.47 | GFF4897 | | Transcription elongation factor GreA | low | > 90 |
| Dinoroseobacter shibae DFL-12 | 0.45 | Dshi_0313 | | AAA ATPase central domain protein (RefSeq) | 0.50 | Dshi_3076 | | transcription elongation factor GreA (RefSeq) | low | > 64 |
| Rhodospirillum rubrum S1H | 0.45 | Rru_A2660 | | AAA ATPase, central region (NCBI) | 0.41 | Rru_A2887 | | GreA/GreB family elongation factor (NCBI) | low | > 58 |
| Caulobacter crescentus NA1000 | 0.45 | CCNA_01342 | | ATPase, AAA family | 0.46 | CCNA_02941 | | transcription elongation factor greA | low | > 66 |
| Caulobacter crescentus NA1000 Δfur | 0.45 | CCNA_01342 | | ATPase, AAA family | 0.46 | CCNA_02941 | | transcription elongation factor greA | low | > 67 |
| Bosea sp. OAE506 | 0.44 | ABIE41_RS14690 | | replication-associated recombination protein A | 0.45 | ABIE41_RS11905 | | transcription elongation factor GreA | — | — |
| Bacteroides ovatus ATCC 8483 | 0.43 | BACOVA_03971 | | ATPase, AAA family | 0.34 | BACOVA_01643 | | prokaryotic transcription elongation factor, GreA/GreB domain protein | low | > 94 |
| Bacteroides stercoris CC31F | 0.42 | HMPREF1181_RS16975 | | replication-associated recombination protein A | 0.33 | HMPREF1181_RS00805 | | transcription elongation factor GreA | — | — |
| Pedobacter sp. GW460-11-11-14-LB5 | 0.42 | CA265_RS22400 | | AAA family ATPase | 0.35 | CA265_RS23190 | | transcription elongation factor GreA | low | > 88 |
| Parabacteroides merdae CL09T00C40 | 0.42 | HMPREF1078_RS15395 | | replication-associated recombination protein A | 0.36 | HMPREF1078_RS17725 | | transcription elongation factor GreA | low | > 61 |
| Bacteroides thetaiotaomicron VPI-5482 | 0.42 | BT1205 | | putative ATPase, AAA family (NCBI ptt file) | 0.34 | BT2565 | | transcription elongation factor greA (NCBI ptt file) | — | — |
| Mucilaginibacter yixingensis YX-36 DSM 26809 | 0.41 | ABZR88_RS20285 | | replication-associated recombination protein A | 0.35 | ABZR88_RS00130 | | transcription elongation factor GreA | low | > 71 |
| Phocaeicola dorei CL03T12C01 | 0.41 | ABI39_RS20200 | | replication-associated recombination protein A | 0.34 | ABI39_RS04145 | | transcription elongation factor GreA | low | > 72 |
| Phocaeicola vulgatus CL09T03C04 | 0.41 | HMPREF1058_RS06440 | | replication-associated recombination protein A | 0.34 | HMPREF1058_RS12565 | | transcription elongation factor GreA | — | — |
| Pontibacter actiniarum KMM 6156, DSM 19842 | 0.41 | CA264_02215 | | AAA family ATPase | 0.31 | CA264_03870 | | transcription elongation factor GreA | low | > 74 |
| Echinicola vietnamensis KMM 6221, DSM 17526 | 0.41 | Echvi_4603 | | ATPase related to the helicase subunit of the Holliday junction resolvase | 0.32 | Echvi_0180 | | transcription elongation factor GreA | low | > 79 |
| Acinetobacter radioresistens SK82 | 0.40 | MPMX26_02987 | | Replication-associated recombination protein A | 0.56 | MPMX26_00765 | | Transcription elongation factor GreA | low | > 36 |
| Desulfovibrio vulgaris Hildenborough JW710 | 0.33 | DVU1686 | | ATPase, AAA family (TIGR) | 0.45 | DVU3245 | greA | transcription elongation factor GreA (TIGR) | low | > 55 |
| Desulfovibrio vulgaris Miyazaki F | 0.32 | DvMF_0339 | | recombination factor protein RarA (RefSeq) | 0.42 | DvMF_0383 | greA | transcription elongation factor GreA (RefSeq) | low | > 51 |
Not shown: 4 genomes with orthologs for PP_4002 only; 1 genomes with orthologs for PP_4722 only