Conservation of cofitness between PP_0293 and PP_1986 in Pseudomonas putida KT2440

96 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_0293 Imidazole glycerol phosphate synthase subunit HisF 1.0 PP_1986 3-isopropylmalate dehydratase small subunit 0.78 17
Pseudomonas fluorescens FW300-N2E2 0.98 Pf6N2E2_3838 Imidazole glycerol phosphate synthase cyclase subunit (EC 4.1.3.-) 0.93 Pf6N2E2_64 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33)
Pseudomonas fluorescens FW300-N2C3 0.98 AO356_09795 imidazole glycerol phosphate synthase subunit HisF 0.93 AO356_21405 3-isopropylmalate dehydratase 0.65 34
Pseudomonas sp. RS175 0.98 PFR28_04933 Imidazole glycerol phosphate synthase subunit HisF 0.94 PFR28_02823 3-isopropylmalate dehydratase small subunit 1 0.40 24
Pseudomonas fluorescens FW300-N1B4 0.98 Pf1N1B4_1623 Imidazole glycerol phosphate synthase cyclase subunit (EC 4.1.3.-) 0.93 Pf1N1B4_14 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33)
Pseudomonas fluorescens SBW25-INTG 0.98 PFLU_RS01625 imidazole glycerol phosphate synthase subunit HisF 0.92 PFLU_RS20575 3-isopropylmalate dehydratase small subunit 0.58 14
Pseudomonas fluorescens SBW25 0.98 PFLU_RS01625 imidazole glycerol phosphate synthase subunit HisF 0.92 PFLU_RS20575 3-isopropylmalate dehydratase small subunit 0.47 22
Pseudomonas fluorescens FW300-N2E3 0.97 AO353_12090 imidazole glycerol phosphate synthase subunit HisF 0.94 AO353_20625 3-isopropylmalate dehydratase 0.82 16
Pseudomonas simiae WCS417 0.97 PS417_01580 imidazole glycerol phosphate synthase 0.92 PS417_18595 3-isopropylmalate dehydratase 0.74 22
Pseudomonas fluorescens GW456-L13 0.97 PfGW456L13_358 Imidazole glycerol phosphate synthase cyclase subunit (EC 4.1.3.-) 0.94 PfGW456L13_3947 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) 0.87 20
Pseudomonas syringae pv. syringae B728a 0.97 Psyr_4893 imidazole glycerol phosphate synthase subunit hisF 0.91 Psyr_1984 3-isopropylmalate dehydratase, small subunit 0.75 21
Pseudomonas syringae pv. syringae B728a ΔmexB 0.97 Psyr_4893 imidazole glycerol phosphate synthase subunit hisF 0.91 Psyr_1984 3-isopropylmalate dehydratase, small subunit
Pseudomonas stutzeri RCH2 0.92 Psest_0156 imidazoleglycerol phosphate synthase, cyclase subunit 0.85 Psest_2590 3-isopropylmalate dehydratase, small subunit
Pseudomonas sp. S08-1 0.92 OH686_14595 Imidazole glycerol phosphate synthase cyclase subunit 0.87 OH686_04475 3-isopropylmalate dehydratase small subunit 0.73 17
Marinobacter adhaerens HP15 0.82 HP15_3009 protein containing histidine biosynthesis, HisF domain 0.72 HP15_1833 isopropylmalate isomerase small subunit
Paraburkholderia bryophila 376MFSha3.1 0.77 H281DRAFT_05659 imidazole glycerol phosphate synthase subunit hisF 0.72 H281DRAFT_06073 3-isopropylmalate dehydratase, small subunit
Burkholderia phytofirmans PsJN 0.77 BPHYT_RS17680 imidazole glycerol phosphate synthase subunit HisF 0.71 BPHYT_RS33905 3-isopropylmalate dehydratase small subunit 0.67 59
Paraburkholderia graminis OAS925 0.77 ABIE53_003695 cyclase 0.71 ABIE53_004803 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit
Paraburkholderia sabiae LMG 24235 0.76 QEN71_RS27835 imidazole glycerol phosphate synthase subunit HisF 0.71 QEN71_RS17615 3-isopropylmalate dehydratase small subunit 0.79 57
Ralstonia solanacearum IBSBF1503 0.76 RALBFv3_RS06815 imidazole glycerol phosphate synthase subunit HisF 0.74 RALBFv3_RS02615 3-isopropylmalate dehydratase small subunit
Ralstonia solanacearum UW163 0.76 UW163_RS06800 imidazole glycerol phosphate synthase subunit HisF 0.74 UW163_RS11110 3-isopropylmalate dehydratase small subunit
Ralstonia solanacearum PSI07 0.76 RPSI07_RS10420 imidazole glycerol phosphate synthase subunit HisF 0.74 RPSI07_RS14700 3-isopropylmalate dehydratase small subunit
Ralstonia solanacearum GMI1000 0.76 RS_RS14760 imidazole glycerol phosphate synthase subunit HisF 0.74 RS_RS09995 3-isopropylmalate dehydratase small subunit
Ralstonia sp. UNC404CL21Col 0.75 ABZR87_RS02470 imidazole glycerol phosphate synthase subunit HisF 0.74 ABZR87_RS14535 3-isopropylmalate dehydratase small subunit
Cupriavidus basilensis FW507-4G11 0.75 RR42_RS18885 imidazole glycerol phosphate synthase 0.70 RR42_RS24180 3-isopropylmalate dehydratase
Acinetobacter radioresistens SK82 0.75 MPMX26_02854 Imidazole glycerol phosphate synthase subunit HisF 0.73 MPMX26_00346 3-isopropylmalate dehydratase small subunit 1 0.91 17
Castellaniella sp019104865 MT123 0.73 ABCV34_RS11250 imidazole glycerol phosphate synthase subunit HisF 0.69 ABCV34_RS04285 3-isopropylmalate dehydratase small subunit low > 48
Dechlorosoma suillum PS 0.72 Dsui_1418 imidazoleglycerol phosphate synthase, cyclase subunit 0.72 Dsui_3199 3-isopropylmalate dehydratase, small subunit
Herbaspirillum seropedicae SmR1 0.72 HSERO_RS20315 imidazole glycerol phosphate synthase 0.72 HSERO_RS16505 3-isopropylmalate dehydratase small subunit 0.81 23
Hydrogenophaga sp. GW460-11-11-14-LB1 0.69 GFF1309 Imidazole glycerol phosphate synthase cyclase subunit (EC 4.1.3.-) 0.70 GFF3361 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33)
Azospirillum brasilense Sp245 0.69 AZOBR_RS01685 imidazole glycerol phosphate synthase 0.55 AZOBR_RS14135 isopropylmalate isomerase 0.87 16
Variovorax sp. OAS795 0.69 ABID97_RS23105 imidazole glycerol phosphate synthase subunit HisF 0.70 ABID97_RS08460 3-isopropylmalate dehydratase small subunit
Variovorax sp. SCN45 0.68 GFF5357 Imidazole glycerol phosphate synthase cyclase subunit 0.71 GFF3889 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33)
Azospirillum sp. SherDot2 0.68 MPMX19_02542 Imidazole glycerol phosphate synthase subunit HisF 0.56 MPMX19_00606 3-isopropylmalate dehydratase small subunit 1
Sinorhizobium meliloti 1021 0.67 SMc02569 imidazole glycerol phosphate synthase subunit HisF 0.54 SMc03795 isopropylmalate isomerase small subunit 0.86 39
Magnetospirillum magneticum AMB-1 0.66 AMB_RS22925 imidazole glycerol phosphate synthase cyclase subunit 0.57 AMB_RS20565 3-isopropylmalate dehydratase small subunit
Rhodospirillum rubrum S1H 0.65 Rru_A3594 Histidine biosynthesis protein HisF (NCBI) 0.55 Rru_A1190 3-isopropylmalate dehydratase small subunit region (NCBI) 0.60 49
Agrobacterium fabrum C58 0.64 Atu0039 imidazoleglycerol-phosphate synthase cyclase 0.53 Atu2790 3-isopropylmalate dehydratase, small subunit 0.78 15
Dinoroseobacter shibae DFL-12 0.64 Dshi_2576 imidazoleglycerol phosphate synthase, cyclase subunit (RefSeq) 0.56 Dshi_0083 3-isopropylmalate dehydratase, small subunit (RefSeq)
Rhizobium sp. OAE497 0.63 ABIE40_RS19440 imidazole glycerol phosphate synthase subunit HisF 0.51 ABIE40_RS19040 3-isopropylmalate dehydratase small subunit 0.93 25
Acidovorax sp. GW101-3H11 0.63 Ac3H11_4733 Imidazole glycerol phosphate synthase cyclase subunit (EC 4.1.3.-) 0.68 Ac3H11_1527 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33)
Rhodopseudomonas palustris CGA009 0.62 TX73_001625 imidazole glycerol phosphate synthase subunit HisF 0.53 TX73_001215 3-isopropylmalate dehydratase small subunit
Bosea sp. OAE506 0.61 ABIE41_RS03810 imidazole glycerol phosphate synthase subunit HisF 0.51 ABIE41_RS11640 3-isopropylmalate dehydratase small subunit
Phaeobacter inhibens DSM 17395 0.61 PGA1_c09240 imidazole glycerol phosphate synthase subunit HisF 0.56 PGA1_c29790 3-isopropylmalate dehydratase small subunit
Sphingomonas koreensis DSMZ 15582 0.60 Ga0059261_1048 imidazoleglycerol phosphate synthase, cyclase subunit 0.38 Ga0059261_4225 3-isopropylmalate dehydratase, small subunit 0.96 33
Caulobacter crescentus NA1000 0.58 CCNA_03853 imidazole glycerol phosphate synthase, cyclase subunit 0.46 CCNA_00195 3-isopropylmalate dehydratase small subunit 0.96 16
Caulobacter crescentus NA1000 Δfur 0.58 CCNA_03853 imidazole glycerol phosphate synthase, cyclase subunit 0.46 CCNA_00195 3-isopropylmalate dehydratase small subunit low > 67
Mycobacterium tuberculosis H37Rv 0.56 Rv1605 Probable cyclase HisF 0.37 Rv2987c Probable 3-isopropylmalate dehydratase (small subunit) LeuD (isopropylmalate isomerase) (alpha-IPM isomerase) (IPMI)
Bifidobacterium breve UCC2003 0.55 BBR_RS16095 imidazole glycerol phosphate synthase subunit HisF 0.37 BBR_RS19625 3-isopropylmalate dehydratase small subunit low > 34
Pontibacter actiniarum KMM 6156, DSM 19842 0.54 CA264_05110 imidazole glycerol phosphate synthase cyclase subunit 0.42 CA264_09440 3-isopropylmalate dehydratase small subunit low > 74
Echinicola vietnamensis KMM 6221, DSM 17526 0.52 Echvi_2516 imidazoleglycerol phosphate synthase, cyclase subunit 0.38 Echvi_2060 3-isopropylmalate dehydratase, small subunit
Bacteroides ovatus ATCC 8483 0.52 BACOVA_00219 imidazoleglycerol phosphate synthase, cyclase subunit 0.40 BACOVA_04602 3-isopropylmalate dehydratase, small subunit 0.93 28
Phocaeicola vulgatus CL09T03C04 0.52 HMPREF1058_RS06175 imidazole glycerol phosphate synthase subunit HisF 0.39 HMPREF1058_RS14555 3-isopropylmalate dehydratase small subunit 0.72 49
Phocaeicola dorei CL03T12C01 0.52 ABI39_RS19930 imidazole glycerol phosphate synthase subunit HisF 0.39 ABI39_RS10205 3-isopropylmalate dehydratase small subunit 0.75 38
Bacteroides thetaiotaomicron VPI-5482 0.51 BT1378 imidazole glycerol phosphate synthase subunit hisF (NCBI ptt file) 0.37 BT1859 3-isopropylmalate dehydratase small subunit (NCBI ptt file) 0.78 39
Bacteroides stercoris CC31F 0.51 HMPREF1181_RS11070 imidazole glycerol phosphate synthase subunit HisF 0.41 HMPREF1181_RS14140 3-isopropylmalate dehydratase small subunit 0.88 41
Parabacteroides merdae CL09T00C40 0.49 HMPREF1078_RS13565 imidazole glycerol phosphate synthase subunit HisF 0.39 HMPREF1078_RS16655 3-isopropylmalate dehydratase small subunit low > 61
Mucilaginibacter yixingensis YX-36 DSM 26809 0.48 ABZR88_RS06855 imidazole glycerol phosphate synthase subunit HisF 0.39 ABZR88_RS11600 3-isopropylmalate dehydratase small subunit
Kangiella aquimarina DSM 16071 0.46 B158DRAFT_2291 imidazoleglycerol phosphate synthase, cyclase subunit 0.73 B158DRAFT_1320 3-isopropylmalate dehydratase, small subunit low > 40
Lysobacter sp. OAE881 0.43 ABIE51_RS13300 imidazole glycerol phosphate synthase subunit HisF 0.41 ABIE51_RS17580 3-isopropylmalate dehydratase small subunit 0.88 22
Xanthomonas campestris pv. campestris strain 8004 0.43 Xcc-8004.2943.1 Imidazole glycerol phosphate synthase cyclase subunit (EC 4.1.3.-) 0.82 Xcc-8004.1050.1 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) 0.86 16
Pectobacterium carotovorum WPP14 0.43 HER17_RS12255 imidazole glycerol phosphate synthase subunit HisF 0.57 HER17_RS03070 3-isopropylmalate dehydratase small subunit 0.97 22
Vibrio cholerae E7946 ATCC 55056 0.42 CSW01_05775 imidazole glycerol phosphate synthase cyclase subunit 0.57 CSW01_12610 3-isopropylmalate dehydratase small subunit low > 62
Rahnella sp. WP5 0.42 EX31_RS11465 imidazole glycerol phosphate synthase subunit HisF 0.58 EX31_RS03695 3-isopropylmalate dehydratase small subunit 0.96 30
Escherichia coli HS(pFamp)R (ATCC 700891) 0.42 OHPLBJKB_01675 Imidazole glycerol phosphate synthase subunit HisF 0.60 OHPLBJKB_03586 3-isopropylmalate dehydratase small subunit low > 73
Escherichia coli ECRC102 0.42 NIAGMN_22435 hisF Imidazole glycerol phosphate synthase subunit HisF 0.59 NIAGMN_08580 leuD 3-isopropylmalate dehydratase small subunit
Escherichia coli ECOR38 0.42 HEPCGN_03195 hisF Imidazole glycerol phosphate synthase subunit HisF 0.58 HEPCGN_08710 leuD 3-isopropylmalate dehydratase small subunit low > 85
Escherichia coli ECRC98 0.42 JDDGAC_28600 hisF Imidazole glycerol phosphate synthase subunit HisF 0.59 JDDGAC_14325 leuD 3-isopropylmalate dehydratase small subunit
Escherichia coli ECRC101 0.42 OKFHMN_24490 hisF Imidazole glycerol phosphate synthase subunit HisF 0.59 OKFHMN_10730 leuD 3-isopropylmalate dehydratase small subunit
Escherichia coli ECRC62 0.42 BNILDI_14715 hisF Imidazole glycerol phosphate synthase subunit HisF 0.59 BNILDI_08535 leuD 3-isopropylmalate dehydratase small subunit
Escherichia coli ECRC99 0.42 KEDOAH_03660 hisF Imidazole glycerol phosphate synthase subunit HisF 0.59 KEDOAH_17425 leuD 3-isopropylmalate dehydratase small subunit
Pantoea sp. MT58 0.42 IAI47_07065 imidazole glycerol phosphate synthase subunit HisF 0.57 IAI47_16015 3-isopropylmalate dehydratase small subunit 0.97 20
Escherichia coli Nissle 1917 0.42 ECOLIN_RS11970 imidazole glycerol phosphate synthase subunit HisF 0.58 ECOLIN_RS00385 3-isopropylmalate dehydratase small subunit low > 52
Escherichia coli ECRC101 0.42 MCAODC_20450 hisF Imidazole glycerol phosphate synthase subunit HisF 0.59 MCAODC_01245 leuD 3-isopropylmalate dehydratase small subunit
Escherichia coli ECOR27 0.42 NOLOHH_15805 hisF Imidazole glycerol phosphate synthase subunit HisF 0.59 NOLOHH_03075 leuD 3-isopropylmalate dehydratase small subunit low > 57
Escherichia coli BW25113 0.42 b2025 hisF imidazole glycerol phosphate synthase subunit HisF (NCBI) 0.59 b0071 leuD isopropylmalate isomerase small subunit (NCBI) 0.95 12
Escherichia fergusonii Becca 0.42 EFB2_01831 Imidazole glycerol phosphate synthase subunit HisF 0.58 EFB2_03974 3-isopropylmalate dehydratase small subunit low > 86
Dickeya dadantii 3937 0.41 DDA3937_RS09710 imidazole glycerol phosphate synthase subunit HisF 0.57 DDA3937_RS18130 3-isopropylmalate dehydratase small subunit low > 74
Enterobacter sp. TBS_079 0.41 MPMX20_03007 Imidazole glycerol phosphate synthase subunit HisF 0.59 MPMX20_00766 3-isopropylmalate dehydratase small subunit 1 0.90 31
Serratia liquefaciens MT49 0.41 IAI46_08185 imidazole glycerol phosphate synthase subunit HisF 0.58 IAI46_03340 3-isopropylmalate dehydratase small subunit low > 86
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.41 GFF3907 Imidazole glycerol phosphate synthase cyclase subunit (EC 4.1.3.-) 0.60 GFF167 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) low > 78
Escherichia coli BL21 0.41 ECD_01927 imidazole glycerol phosphate synthase, catalytic subunit with HisH 0.59 ECD_00073 3-isopropylmalate dehydratase small subunit
Erwinia tracheiphila SCR3 0.41 LU632_RS08920 hisF imidazole glycerol phosphate synthase subunit HisF 0.53 LU632_RS02865 leuD 3-isopropylmalate dehydratase small subunit 0.77 34
Enterobacter asburiae PDN3 0.41 EX28DRAFT_0534 imidazoleglycerol phosphate synthase, cyclase subunit 0.59 EX28DRAFT_3667 3-isopropylmalate dehydratase, small subunit 0.77 37
Dickeya dianthicola 67-19 0.41 HGI48_RS09720 imidazole glycerol phosphate synthase subunit HisF 0.56 HGI48_RS18070 3-isopropylmalate dehydratase small subunit
Dickeya dianthicola ME23 0.41 DZA65_RS10030 imidazole glycerol phosphate synthase subunit HisF 0.56 DZA65_RS19215 3-isopropylmalate dehydratase small subunit 0.76 33
Brevundimonas sp. GW460-12-10-14-LB2 0.40 A4249_RS10715 imidazole glycerol phosphate synthase subunit HisF 0.36 A4249_RS10000 3-isopropylmalate dehydratase small subunit 0.99 23
Klebsiella michiganensis M5al 0.40 BWI76_RS18950 imidazole glycerol phosphate synthase cyclase subunit 0.58 BWI76_RS04665 3-isopropylmalate dehydratase small subunit 0.87 15
Alteromonas macleodii MIT1002 0.40 MIT1002_02638 Imidazole glycerol phosphate synthase subunit HisF 0.50 MIT1002_00946 3-isopropylmalate dehydratase small subunit 1 0.89 50
Dyella japonica UNC79MFTsu3.2 0.39 ABZR86_RS06705 imidazole glycerol phosphate synthase subunit HisF 0.39 ABZR86_RS15955 3-isopropylmalate dehydratase small subunit 0.89 57
Shewanella sp. ANA-3 0.39 Shewana3_1848 imidazole glycerol phosphate synthase subunit HisF (RefSeq) 0.50 Shewana3_3758 leuD isopropylmalate isomerase small subunit (RefSeq) 0.94 11
Shewanella oneidensis MR-1 0.39 SO2068 hisF hisF protein (cyclase) (NCBI ptt file) 0.50 SO4233 leuD 3-isopropylmalate dehydratase, small subunit (NCBI ptt file) 0.98 10
Rhodanobacter denitrificans FW104-10B01 0.39 LRK54_RS01580 imidazole glycerol phosphate synthase subunit HisF 0.47 LRK54_RS07370 3-isopropylmalate dehydratase small subunit low > 59
Shewanella amazonensis SB2B 0.38 Sama_1947 imidazole glycerol phosphate synthase subunit HisF (RefSeq) 0.49 Sama_0338 leuD isopropylmalate isomerase small subunit (RefSeq) 0.93 35
Rhodanobacter denitrificans MT42 0.38 LRK55_RS01360 imidazole glycerol phosphate synthase subunit HisF 0.47 LRK55_RS07100 3-isopropylmalate dehydratase small subunit low > 63
Rhodanobacter sp. FW510-T8 0.37 OKGIIK_04975 hisF imidazole glycerol phosphate synthase subunit HisF 0.36 OKGIIK_13590 leuD 3-isopropylmalate dehydratase small subunit low > 52
Shewanella loihica PV-4 0.36 Shew_2203 imidazole glycerol phosphate synthase subunit HisF (RefSeq) 0.54 Shew_3469 isopropylmalate isomerase small subunit (RefSeq) 0.96 26

Not shown: 5 genomes with orthologs for PP_0293 only; 1 genomes with orthologs for PP_1986 only