Conservation of cofitness between PP_0850 and PP_0872 in Pseudomonas putida KT2440

93 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_0850 Dual-specificity RNA methyltransferase RlmN 1.0 PP_0872 Peptide chain release factor 3 0.35 3
Pseudomonas fluorescens FW300-N2C3 0.88 AO356_06605 23S rRNA (adenine(2503)-C2)-methyltransferase 0.95 AO356_07285 peptide chain release factor 3 — —
Pseudomonas fluorescens FW300-N2E2 0.88 Pf6N2E2_3181 Ribosomal RNA large subunit methyltransferase N (EC 2.1.1.-) 0.93 Pf6N2E2_3327 Peptide chain release factor 3 — —
Pseudomonas sp. RS175 0.88 PFR28_00294 Dual-specificity RNA methyltransferase RlmN 0.95 PFR28_00118 Peptide chain release factor RF3 — —
Pseudomonas fluorescens FW300-N2E3 0.87 AO353_15875 23S rRNA (adenine(2503)-C2)-methyltransferase 0.95 AO353_05420 peptide chain release factor 3 low > 101
Pseudomonas fluorescens GW456-L13 0.87 PfGW456L13_4865 Ribosomal RNA large subunit methyltransferase N (EC 2.1.1.-) 0.95 PfGW456L13_5060 Peptide chain release factor 3 low > 87
Pseudomonas fluorescens SBW25-INTG 0.87 PFLU_RS24815 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN 0.95 PFLU_RS04070 peptide chain release factor 3 low > 109
Pseudomonas fluorescens SBW25 0.87 PFLU_RS24815 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN 0.95 PFLU_RS04070 peptide chain release factor 3 low > 109
Pseudomonas fluorescens FW300-N1B4 0.87 Pf1N1B4_857 Ribosomal RNA large subunit methyltransferase N (EC 2.1.1.-) 0.77 Pf1N1B4_1130 Peptide chain release factor 3 — —
Pseudomonas simiae WCS417 0.87 PS417_23160 50S rRNA methyltransferase 0.95 PS417_04030 peptide chain release factor 3 — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.86 Psyr_1245 23S rRNA m(2)A-2503 methyltransferase 0.95 Psyr_4253 bacterial peptide chain release factor 3 (bRF-3) — —
Pseudomonas syringae pv. syringae B728a 0.86 Psyr_1245 23S rRNA m(2)A-2503 methyltransferase 0.95 Psyr_4253 bacterial peptide chain release factor 3 (bRF-3) — —
Pseudomonas sp. S08-1 0.85 OH686_17515 23S rRNA (adenine(2503)-C(2))-methyltransferase 0.92 OH686_08765 peptide chain release factor 3 — —
Pseudomonas stutzeri RCH2 0.84 Psest_1259 23S rRNA m2A2503 methyltransferase 0.94 Psest_3351 peptide chain release factor 3 low > 67
Marinobacter adhaerens HP15 0.66 HP15_1490 conserved hypothetical protein 0.69 HP15_541 peptide chain release factor 3 low > 73
Acinetobacter radioresistens SK82 0.60 MPMX26_00426 Dual-specificity RNA methyltransferase RlmN 0.72 MPMX26_00476 Peptide chain release factor RF3 low > 36
Kangiella aquimarina DSM 16071 0.57 B158DRAFT_1149 23S rRNA m2A2503 methyltransferase 0.70 B158DRAFT_2239 peptide chain release factor 3 low > 40
Lysobacter sp. OAE881 0.56 ABIE51_RS09415 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN 0.63 ABIE51_RS16210 peptide chain release factor 3 — —
Escherichia coli BW25113 0.56 b2517 yfgB predicted enzyme (NCBI) 0.67 b4375 prfC peptide chain release factor 3 (NCBI) 0.23 39
Escherichia coli ECOR27 0.56 NOLOHH_13360 rlmN bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN 0.67 NOLOHH_03600 prfC peptide chain release factor 3 low > 57
Escherichia coli ECRC101 0.56 OKFHMN_21710 rlmN bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN 0.67 OKFHMN_11280 prfC peptide chain release factor 3 — —
Escherichia coli ECRC101 0.56 MCAODC_12240 rlmN bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN 0.67 MCAODC_01795 prfC peptide chain release factor 3 — —
Escherichia coli Nissle 1917 0.56 ECOLIN_RS14300 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN 0.67 ECOLIN_RS25110 peptide chain release factor 3 low > 52
Escherichia coli ECRC62 0.56 BNILDI_12160 rlmN bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN 0.67 BNILDI_08000 prfC peptide chain release factor 3 — —
Escherichia coli ECRC98 0.56 JDDGAC_25385 rlmN bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN 0.67 JDDGAC_14875 prfC peptide chain release factor 3 — —
Escherichia coli BL21 0.56 ECD_02409 dual specificity 23S rRNA m(2)A2503, tRNA m(2)A37 methyltransferase, SAM-dependent 0.67 ECD_04250 peptide chain release factor RF-3 low > 60
Escherichia coli ECRC102 0.56 NIAGMN_19480 rlmN bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN 0.67 NIAGMN_09130 prfC peptide chain release factor 3 — —
Escherichia fergusonii Becca 0.56 EFB2_01373 Dual-specificity RNA methyltransferase RlmN 0.67 EFB2_04072 Peptide chain release factor RF3 low > 86
Escherichia coli ECRC99 0.56 KEDOAH_06510 rlmN bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN 0.67 KEDOAH_16865 prfC peptide chain release factor 3 — —
Escherichia coli ECOR38 0.56 HEPCGN_20830 rlmN bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN 0.67 HEPCGN_09285 prfC peptide chain release factor 3 low > 85
Escherichia coli HS(pFamp)R (ATCC 700891) 0.55 OHPLBJKB_01192 Dual-specificity RNA methyltransferase RlmN 0.67 OHPLBJKB_03687 Peptide chain release factor RF3 low > 73
Enterobacter asburiae PDN3 0.55 EX28DRAFT_0126 23S rRNA (adenine(2503)-C(2))-methyltransferase 0.68 EX28DRAFT_3583 peptide chain release factor 3 low > 76
Enterobacter sp. TBS_079 0.55 MPMX20_03395 Dual-specificity RNA methyltransferase RlmN 0.68 MPMX20_00673 Peptide chain release factor RF3 low > 85
Dickeya dadantii 3937 0.55 DDA3937_RS15480 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN 0.68 DDA3937_RS02445 peptide chain release factor 3 low > 74
Klebsiella michiganensis M5al 0.55 BWI76_RS21095 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN 0.68 BWI76_RS04100 peptide chain release factor 3 low > 92
Pectobacterium carotovorum WPP14 0.55 HER17_RS06085 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN 0.67 HER17_RS19065 peptide chain release factor 3 low > 75
Dickeya dianthicola ME23 0.54 DZA65_RS16665 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN 0.68 DZA65_RS02505 peptide chain release factor 3 low > 75
Rahnella sp. WP5 0.54 EX31_RS20525 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN 0.68 EX31_RS04095 peptide chain release factor 3 — —
Dickeya dianthicola 67-19 0.54 HGI48_RS15590 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN 0.68 HGI48_RS02400 peptide chain release factor 3 — —
Serratia liquefaciens MT49 0.54 IAI46_19290 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN 0.68 IAI46_02875 peptide chain release factor 3 low > 86
Erwinia tracheiphila SCR3 0.54 LU632_RS17815 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN 0.69 LU632_RS02475 prfC peptide chain release factor 3 low > 74
Cupriavidus basilensis FW507-4G11 0.54 RR42_RS13155 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN 0.62 RR42_RS37475 peptide chain release factor 3 — —
Shewanella sp. ANA-3 0.54 Shewana3_1226 hypothetical protein (RefSeq) 0.68 Shewana3_1037 prfC peptide chain release factor 3 (RefSeq) low > 73
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.54 GFF2414 Ribosomal RNA large subunit methyltransferase N (EC 2.1.1.-) 0.68 GFF1035 Peptide chain release factor 3 low > 78
Dechlorosoma suillum PS 0.54 Dsui_3145 23S rRNA m2A2503 methyltransferase 0.61 Dsui_2418 peptide chain release factor 3 — —
Ralstonia sp. UNC404CL21Col 0.54 ABZR87_RS10900 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN 0.61 ABZR87_RS23485 peptide chain release factor 3 low > 80
Ralstonia solanacearum PSI07 0.54 RPSI07_RS18115 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN 0.60 RPSI07_RS07810 peptide chain release factor 3 low > 81
Ralstonia solanacearum GMI1000 0.54 RS_RS06070 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN 0.60 RS_RS25080 peptide chain release factor 3 low > 80
Ralstonia solanacearum IBSBF1503 0.54 RALBFv3_RS15260 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN 0.60 RALBFv3_RS23345 peptide chain release factor 3 — —
Ralstonia solanacearum UW163 0.54 UW163_RS12725 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN 0.60 UW163_RS16595 peptide chain release factor 3 — —
Rhodanobacter denitrificans MT42 0.53 LRK55_RS18065 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN 0.64 LRK55_RS05155 peptide chain release factor 3 — —
Rhodanobacter denitrificans FW104-10B01 0.53 LRK54_RS00070 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN 0.64 LRK54_RS05380 peptide chain release factor 3 — —
Shewanella amazonensis SB2B 0.53 Sama_2368 hypothetical protein (RefSeq) 0.68 Sama_0968 prfC peptide chain release factor 3 (RefSeq) low > 62
Xanthomonas campestris pv. campestris strain 8004 0.53 Xcc-8004.2737.1 Ribosomal RNA large subunit methyltransferase N (EC 2.1.1.-) 0.62 Xcc-8004.1590.1 Peptide chain release factor 3 — —
Rhodanobacter sp. FW510-T8 0.53 OKGIIK_07140 rlmN 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN 0.64 OKGIIK_01430 prfC peptide chain release factor 3 — —
Shewanella loihica PV-4 0.53 Shew_1287 hypothetical protein (RefSeq) 0.69 Shew_2820 prfC peptide chain release factor 3 (RefSeq) low > 60
Dyella japonica UNC79MFTsu3.2 0.53 ABZR86_RS05455 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN 0.64 ABZR86_RS19000 peptide chain release factor 3 — —
Pantoea sp. MT58 0.53 IAI47_05040 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN 0.69 IAI47_03375 peptide chain release factor 3 low > 76
Vibrio cholerae E7946 ATCC 55056 0.53 CSW01_03930 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN 0.69 CSW01_03470 peptide chain release factor 3 low > 62
Paraburkholderia sabiae LMG 24235 0.53 QEN71_RS05965 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN 0.53 QEN71_RS17200 peptide chain release factor 3 low > 153
Paraburkholderia bryophila 376MFSha3.1 0.52 H281DRAFT_00514 23S rRNA m(2)A-2503 methyltransferase 0.54 H281DRAFT_03538 bacterial peptide chain release factor 3 (bRF-3) — —
Burkholderia phytofirmans PsJN 0.52 BPHYT_RS12590 dual-specificity RNA methyltransferase RlmN 0.54 BPHYT_RS34275 peptide chain release factor 3 low > 109
Paraburkholderia graminis OAS925 0.52 ABIE53_002744 23S rRNA (adenine2503-C2)-methyltransferase 0.54 ABIE53_004717 peptide chain release factor 3 low > 113
Herbaspirillum seropedicae SmR1 0.51 HSERO_RS14810 50S rRNA methyltransferase 0.64 HSERO_RS14640 peptide chain release factor 3 — —
Acidovorax sp. GW101-3H11 0.51 Ac3H11_1791 Ribosomal RNA large subunit methyltransferase N (EC 2.1.1.-) 0.51 Ac3H11_3041 Peptide chain release factor 3 — —
Alteromonas macleodii MIT1002 0.50 MIT1002_02791 Dual-specificity RNA methyltransferase RlmN 0.68 MIT1002_01192 Peptide chain release factor 3 0.69 36
Hydrogenophaga sp. GW460-11-11-14-LB1 0.50 GFF4866 Ribosomal RNA large subunit methyltransferase N (EC 2.1.1.-) 0.53 GFF768 Peptide chain release factor 3 low > 90
Variovorax sp. SCN45 0.49 GFF992 23S rRNA (adenine(2503)-C(2))-methyltransferase @ tRNA (adenine(37)-C(2))-methyltransferase (EC 2.1.1.192) 0.51 GFF2045 Peptide chain release factor 3 low > 127
Castellaniella sp019104865 MT123 0.49 ABCV34_RS02610 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN 0.54 ABCV34_RS12505 peptide chain release factor 3 low > 48
Azospirillum brasilense Sp245 0.46 AZOBR_RS00800 50S rRNA methyltransferase 0.49 AZOBR_RS14730 peptide chain release factor 3 — —
Azospirillum sp. SherDot2 0.46 MPMX19_02413 Dual-specificity RNA methyltransferase RlmN 0.48 MPMX19_01192 Peptide chain release factor 3 — —
Phaeobacter inhibens DSM 17395 0.44 PGA1_c36240 ribosomal RNA large subunit methyltransferase N 0.45 PGA1_c10620 peptide chain release factor 3 — —
Agrobacterium fabrum C58 0.43 Atu2673 hypothetical protein 0.48 Atu0315 peptide chain release factor 3 — —
Dinoroseobacter shibae DFL-12 0.43 Dshi_3311 radical SAM enzyme, Cfr family (RefSeq) 0.44 Dshi_1336 peptide chain release factor 3 (RefSeq) low > 64
Caulobacter crescentus NA1000 Δfur 0.42 CCNA_00133 radical SAM family enzyme 0.43 CCNA_01123 peptide chain release factor RF-3 low > 67
Caulobacter crescentus NA1000 0.42 CCNA_00133 radical SAM family enzyme 0.43 CCNA_01123 peptide chain release factor RF-3 low > 66
Rhodopseudomonas palustris CGA009 0.42 TX73_002060 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN 0.47 TX73_011820 peptide chain release factor 3 low > 86
Magnetospirillum magneticum AMB-1 0.42 AMB_RS05715 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN 0.51 AMB_RS01375 peptide chain release factor 3 — —
Sinorhizobium meliloti 1021 0.41 SMc03831 hypothetical protein 0.50 SMc00427 peptide chain release factor RF-3 protein low > 103
Sphingomonas koreensis DSMZ 15582 0.41 Ga0059261_1407 23S rRNA (adenine(2503)-C(2))-methyltransferase 0.45 Ga0059261_2044 peptide chain release factor 3 low > 68
Brevundimonas sp. GW460-12-10-14-LB2 0.41 A4249_RS12865 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN 0.44 A4249_RS15275 peptide chain release factor 3 low > 48
Bosea sp. OAE506 0.41 ABIE41_RS04880 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN 0.48 ABIE41_RS06180 peptide chain release factor 3 0.44 15
Rhizobium sp. OAE497 0.41 ABIE40_RS18200 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN 0.50 ABIE40_RS01450 peptide chain release factor 3 low > 107
Synechococcus elongatus PCC 7942 0.33 Synpcc7942_1758 hypothetical protein 0.42 Synpcc7942_2365 prfC peptide chain release factor 3 low > 38
Desulfovibrio vulgaris Miyazaki F 0.32 DvMF_1431 radical SAM enzyme, Cfr family (RefSeq) 0.55 DvMF_2372 prfC peptide chain release factor 3 (RefSeq) low > 51
Desulfovibrio vulgaris Hildenborough JW710 0.32 DVU2904 radical SAM enzyme, Cfr family (TIGR) 0.58 DVU3116 prfC peptide chain release factor 3 (TIGR) low > 55
Bacteroides ovatus ATCC 8483 0.31 BACOVA_05204 23S rRNA m2A2503 methyltransferase 0.45 BACOVA_04458 peptide chain release factor 3 low > 94
Phocaeicola dorei CL03T12C01 0.30 ABI39_RS12945 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN 0.46 ABI39_RS00385 peptide chain release factor 3 — —
Bacteroides stercoris CC31F 0.30 HMPREF1181_RS05775 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN 0.45 HMPREF1181_RS05585 peptide chain release factor 3 low > 56
Phocaeicola vulgatus CL09T03C04 0.30 HMPREF1058_RS17025 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN 0.46 HMPREF1058_RS07935 peptide chain release factor 3 — —
Bacteroides thetaiotaomicron VPI-5482 0.30 BT4372 conserved hypothetical protein (NCBI ptt file) 0.45 BT1729 peptide chain release factor 3 (RF-3) (NCBI ptt file) low > 81
Pedobacter sp. GW460-11-11-14-LB5 0.30 CA265_RS19115 23S rRNA (adenine(2503)-C(2))-methyltransferase 0.46 CA265_RS18435 peptide chain release factor 3 low > 88
Parabacteroides merdae CL09T00C40 0.30 HMPREF1078_RS14530 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN 0.49 HMPREF1078_RS04145 peptide chain release factor 3 low > 61
Echinicola vietnamensis KMM 6221, DSM 17526 0.29 Echvi_0755 23S rRNA m2A2503 methyltransferase 0.50 Echvi_0584 peptide chain release factor 3 0.51 2

Not shown: 6 genomes with orthologs for PP_0850 only; 1 genomes with orthologs for PP_0872 only