Conservation of cofitness between PP_5310 and PP_0123 in Pseudomonas putida KT2440

95 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_5310 junction-specific ATP-dependent DNA helicase 1.0 PP_0123 DNA polymerase I, 5 0.59 3
Pseudomonas fluorescens SBW25-INTG 0.89 PFLU_RS29550 ATP-dependent DNA helicase RecG 0.77 PFLU_RS00395 DNA polymerase I low > 109
Pseudomonas fluorescens SBW25 0.89 PFLU_RS29550 ATP-dependent DNA helicase RecG 0.77 PFLU_RS00395 DNA polymerase I low > 109
Pseudomonas fluorescens FW300-N1B4 0.89 Pf1N1B4_2105 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.79 Pf1N1B4_1875 DNA polymerase I (EC 2.7.7.7) — —
Pseudomonas fluorescens GW456-L13 0.89 PfGW456L13_772 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.76 PfGW456L13_594 DNA polymerase I (EC 2.7.7.7) low > 87
Pseudomonas simiae WCS417 0.89 PS417_27870 ATP-dependent DNA helicase RecG 0.79 PS417_00405 DNA polymerase I 0.41 11
Pseudomonas fluorescens FW300-N2E3 0.89 AO353_09320 ATP-dependent DNA helicase RecG 0.80 AO353_10930 DNA polymerase I 0.68 2
Pseudomonas syringae pv. syringae B728a 0.87 Psyr_0201 ATP-dependent DNA helicase RecG 0.79 Psyr_0270 DNA polymerase I low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.87 Psyr_0201 ATP-dependent DNA helicase RecG 0.79 Psyr_0270 DNA polymerase I low > 86
Pseudomonas sp. RS175 0.87 PFR28_04435 ATP-dependent DNA helicase RecG 0.79 PFR28_04624 DNA polymerase I low > 88
Pseudomonas fluorescens FW300-N2C3 0.87 AO356_12380 ATP-dependent DNA helicase RecG 0.80 AO356_11465 DNA polymerase I 0.53 9
Pseudomonas fluorescens FW300-N2E2 0.87 Pf6N2E2_4352 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.80 Pf6N2E2_4162 DNA polymerase I (EC 2.7.7.7) 0.62 3
Pseudomonas stutzeri RCH2 0.83 Psest_4192 ATP-dependent DNA helicase RecG 0.77 Psest_4219 DNA polymerase I — —
Pseudomonas sp. S08-1 0.82 OH686_13505 ATP-dependent DNA helicase RecG 0.77 OH686_12215 DNA polymerase I low > 80
Marinobacter adhaerens HP15 0.60 HP15_309 DNA helicase, ATP-dependent, RecG 0.56 HP15_293 DNA polymerase I 0.37 55
Shewanella amazonensis SB2B 0.57 Sama_3375 ATP-dependent DNA helicase RecG (RefSeq) 0.61 Sama_0093 DNA-directed DNA polymerase (RefSeq) low > 62
Alteromonas macleodii MIT1002 0.57 MIT1002_00111 ATP-dependent DNA helicase RecG 0.62 MIT1002_00014 DNA polymerase I low > 70
Pantoea sp. MT58 0.56 IAI47_00500 ATP-dependent DNA helicase RecG 0.60 IAI47_00430 DNA polymerase I low > 76
Escherichia coli ECRC98 0.56 JDDGAC_19170 recG ATP-dependent DNA helicase RecG 0.61 JDDGAC_17775 polA DNA polymerase I — —
Escherichia coli ECRC101 0.56 MCAODC_06055 recG ATP-dependent DNA helicase RecG 0.61 MCAODC_04650 polA DNA polymerase I — —
Escherichia coli ECRC99 0.56 KEDOAH_12600 recG ATP-dependent DNA helicase RecG 0.61 KEDOAH_14000 polA DNA polymerase I — —
Shewanella sp. ANA-3 0.56 Shewana3_0348 ATP-dependent DNA helicase RecG (RefSeq) 0.61 Shewana3_4109 DNA polymerase I (RefSeq) — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.56 GFF355 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.60 GFF2216 DNA polymerase I (EC 2.7.7.7) 0.57 17
Escherichia coli ECRC101 0.56 OKFHMN_15545 recG ATP-dependent DNA helicase RecG 0.61 OKFHMN_14150 polA DNA polymerase I — —
Escherichia coli ECRC102 0.56 NIAGMN_13305 recG ATP-dependent DNA helicase RecG 0.61 NIAGMN_11905 polA DNA polymerase I — —
Serratia liquefaciens MT49 0.56 IAI46_24905 ATP-dependent DNA helicase RecG 0.60 IAI46_24985 DNA polymerase I 0.83 5
Escherichia coli HS(pFamp)R (ATCC 700891) 0.56 OHPLBJKB_00049 ATP-dependent DNA helicase RecG 0.61 OHPLBJKB_04189 DNA polymerase I — —
Escherichia coli ECOR38 0.56 HEPCGN_14365 recG ATP-dependent DNA helicase RecG 0.61 HEPCGN_12785 polA DNA polymerase I — —
Escherichia coli ECRC62 0.56 BNILDI_04090 recG ATP-dependent DNA helicase RecG 0.61 BNILDI_05250 polA DNA polymerase I — —
Escherichia coli ECOR27 0.56 NOLOHH_07425 recG ATP-dependent DNA helicase RecG 0.61 NOLOHH_06280 polA DNA polymerase I — —
Escherichia fergusonii Becca 0.56 EFB2_00136 ATP-dependent DNA helicase RecG 0.60 EFB2_04753 DNA polymerase I — —
Erwinia tracheiphila SCR3 0.56 LU632_RS22190 recG ATP-dependent DNA helicase RecG 0.61 LU632_RS23870 polA DNA polymerase I — —
Enterobacter asburiae PDN3 0.56 EX28DRAFT_3901 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.60 EX28DRAFT_4343 DNA polymerase I (EC 2.7.7.7) — —
Escherichia coli BL21 0.56 ECD_03509 ATP-dependent DNA helicase 0.61 ECD_03749 5 — —
Pectobacterium carotovorum WPP14 0.56 HER17_RS21395 ATP-dependent DNA helicase RecG 0.61 HER17_RS21470 DNA polymerase I — —
Rahnella sp. WP5 0.56 EX31_RS15820 ATP-dependent DNA helicase RecG 0.61 EX31_RS15905 DNA polymerase I low > 89
Escherichia coli BW25113 0.56 b3652 recG ATP-dependent DNA helicase (NCBI) 0.61 b3863 polA DNA polymerase I (NCBI) 0.32 49
Escherichia coli Nissle 1917 0.56 ECOLIN_RS20800 ATP-dependent DNA helicase RecG 0.61 ECOLIN_RS22270 DNA polymerase I — —
Shewanella loihica PV-4 0.55 Shew_3507 ATP-dependent DNA helicase RecG (RefSeq) 0.60 Shew_3714 DNA polymerase I (RefSeq) low > 60
Shewanella oneidensis MR-1 0.55 SO4364 recG ATP-dependent DNA helicase RecG (NCBI ptt file) 0.60 SO4669 polA DNA polymerase I (NCBI ptt file) — —
Dyella japonica UNC79MFTsu3.2 0.55 ABZR86_RS11840 ATP-dependent DNA helicase RecG 0.55 ABZR86_RS17015 DNA polymerase I low > 74
Enterobacter sp. TBS_079 0.55 MPMX20_00084 ATP-dependent DNA helicase RecG 0.60 MPMX20_04601 DNA polymerase I low > 85
Dickeya dadantii 3937 0.55 DDA3937_RS00170 ATP-dependent DNA helicase RecG 0.59 DDA3937_RS00105 DNA polymerase I — —
Rhodanobacter denitrificans MT42 0.55 LRK55_RS11530 ATP-dependent DNA helicase RecG 0.56 LRK55_RS06585 DNA polymerase I low > 63
Acinetobacter radioresistens SK82 0.55 MPMX26_02732 ATP-dependent DNA helicase RecG 0.48 MPMX26_00574 DNA polymerase I low > 36
Dickeya dianthicola ME23 0.55 DZA65_RS22160 ATP-dependent DNA helicase RecG 0.59 DZA65_RS22235 DNA polymerase I — —
Klebsiella michiganensis M5al 0.55 BWI76_RS27440 DNA helicase RecG 0.59 BWI76_RS00355 DNA polymerase I low > 92
Dickeya dianthicola 67-19 0.55 HGI48_RS21190 ATP-dependent DNA helicase RecG 0.59 HGI48_RS21260 DNA polymerase I — —
Rhodanobacter denitrificans FW104-10B01 0.55 LRK54_RS11805 ATP-dependent DNA helicase RecG 0.56 LRK54_RS06840 DNA polymerase I low > 59
Vibrio cholerae E7946 ATCC 55056 0.54 CSW01_13680 DNA helicase RecG 0.61 CSW01_00560 DNA polymerase I low > 62
Rhodanobacter sp. FW510-T8 0.54 OKGIIK_12090 recG ATP-dependent DNA helicase RecG 0.56 OKGIIK_16785 polA DNA polymerase I low > 52
Lysobacter sp. OAE881 0.53 ABIE51_RS17230 ATP-dependent DNA helicase RecG 0.52 ABIE51_RS02010 DNA polymerase I low > 62
Xanthomonas campestris pv. campestris strain 8004 0.51 Xcc-8004.1204.1 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.52 Xcc-8004.5105.1 DNA polymerase I (EC 2.7.7.7) — —
Kangiella aquimarina DSM 16071 0.51 B158DRAFT_0566 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.57 B158DRAFT_0499 DNA polymerase I (EC 2.7.7.7) low > 40
Burkholderia phytofirmans PsJN 0.47 BPHYT_RS03400 ATP-dependent DNA helicase RecG 0.51 BPHYT_RS33610 DNA polymerase I low > 109
Cupriavidus basilensis FW507-4G11 0.47 RR42_RS17390 ATP-dependent DNA helicase RecG 0.52 RR42_RS15050 DNA polymerase I 0.67 2
Paraburkholderia sabiae LMG 24235 0.46 QEN71_RS26630 ATP-dependent DNA helicase RecG 0.52 QEN71_RS17885 DNA polymerase I — —
Paraburkholderia graminis OAS925 0.46 ABIE53_000833 ATP-dependent DNA helicase RecG 0.51 ABIE53_004852 DNA polymerase-1 0.38 71
Ralstonia solanacearum PSI07 0.46 RPSI07_RS11625 DNA helicase RecG 0.51 RPSI07_RS13480 DNA polymerase I low > 81
Paraburkholderia bryophila 376MFSha3.1 0.46 H281DRAFT_04672 ATP-dependent DNA helicase RecG 0.50 H281DRAFT_06022 DNA polymerase I 0.34 79
Ralstonia sp. UNC404CL21Col 0.46 ABZR87_RS01270 ATP-dependent DNA helicase RecG 0.52 ABZR87_RS15680 DNA polymerase I 0.67 4
Ralstonia solanacearum GMI1000 0.46 RS_RS13565 DNA helicase RecG 0.51 RS_RS11195 DNA polymerase I — —
Ralstonia solanacearum IBSBF1503 0.46 RALBFv3_RS05675 DNA helicase RecG 0.51 RALBFv3_RS03750 DNA polymerase I 0.41 22
Ralstonia solanacearum UW163 0.46 UW163_RS07950 DNA helicase RecG 0.51 UW163_RS09920 DNA polymerase I — —
Herbaspirillum seropedicae SmR1 0.45 HSERO_RS06165 ATP-dependent DNA helicase RecG 0.53 HSERO_RS02260 DNA polymerase I 0.57 12
Dechlorosoma suillum PS 0.45 Dsui_0311 ATP-dependent DNA helicase RecG 0.52 Dsui_0459 DNA polymerase I low > 51
Acidovorax sp. GW101-3H11 0.44 Ac3H11_781 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.48 Ac3H11_1648 DNA polymerase I (EC 2.7.7.7) — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.43 GFF2802 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.45 GFF5584 DNA polymerase I (EC 2.7.7.7) 0.80 2
Castellaniella sp019104865 MT123 0.43 ABCV34_RS03570 ATP-dependent DNA helicase RecG 0.47 ABCV34_RS02195 DNA polymerase I low > 48
Variovorax sp. OAS795 0.41 ABID97_RS01575 ATP-dependent DNA helicase RecG 0.48 ABID97_RS09180 DNA polymerase I low > 91
Variovorax sp. SCN45 0.40 GFF5538 ATP-dependent DNA helicase RecG (EC 3.6.4.12) 0.49 GFF4006 DNA polymerase I (EC 2.7.7.7) low > 127
Magnetospirillum magneticum AMB-1 0.35 AMB_RS12400 ATP-dependent DNA helicase RecG 0.39 AMB_RS21305 DNA polymerase I — —
Rhizobium sp. OAE497 0.35 ABIE40_RS09300 ATP-dependent DNA helicase RecG 0.31 ABIE40_RS00490 DNA polymerase I low > 107
Azospirillum brasilense Sp245 0.35 AZOBR_RS09850 ATP-dependent DNA helicase RecG 0.39 AZOBR_RS30685 DNA polymerase 0.56 3
Phocaeicola vulgatus CL09T03C04 0.34 HMPREF1058_RS08295 ATP-dependent DNA helicase RecG 0.35 HMPREF1058_RS11500 DNA polymerase I low > 67
Agrobacterium fabrum C58 0.34 Atu1780 ATP-dependent DNA helicase 0.41 Atu0110 DNA polymerase I — —
Synechococcus elongatus PCC 7942 0.34 Synpcc7942_1079 recG ATP-dependent DNA helicase RecG 0.31 Synpcc7942_0194 polA DNA polymerase I — —
Azospirillum sp. SherDot2 0.34 MPMX19_00951 ATP-dependent DNA helicase RecG 0.38 MPMX19_04869 DNA polymerase I — —
Fusobacterium nucleatum SB010 0.34 HUW76_01465 ATP-dependent DNA helicase RecG 0.26 HUW76_04385 DNA polymerase I low > 35
Caulobacter crescentus NA1000 0.33 CCNA_01504 ATP-dependent DNA helicase recG 0.40 CCNA_03577 DNA polymerase I low > 66
Caulobacter crescentus NA1000 Δfur 0.33 CCNA_01504 ATP-dependent DNA helicase recG 0.40 CCNA_03577 DNA polymerase I low > 67
Parabacteroides merdae CL09T00C40 0.33 HMPREF1078_RS12765 ATP-dependent DNA helicase RecG 0.36 HMPREF1078_RS06335 DNA polymerase I — —
Phaeobacter inhibens DSM 17395 0.33 PGA1_c14380 ATP-dependent DNA helicase RecG 0.39 PGA1_c31780 DNA polymerase I low > 62
Bacteroides stercoris CC31F 0.33 HMPREF1181_RS06615 ATP-dependent DNA helicase RecG 0.36 HMPREF1181_RS02070 DNA polymerase I low > 56
Bacteroides thetaiotaomicron VPI-5482 0.33 BT3924 ATP-dependent DNA helicase recG (NCBI ptt file) 0.36 BT3260 DNA polymerase I (NCBI ptt file) — —
Dinoroseobacter shibae DFL-12 0.33 Dshi_1510 DEAD/DEAH box helicase domain protein (RefSeq) 0.40 Dshi_2909 DNA polymerase I (RefSeq) 0.37 20
Sphingomonas koreensis DSMZ 15582 0.32 Ga0059261_0958 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.35 Ga0059261_2244 DNA polymerase I (EC 2.7.7.7) 0.27 27
Pontibacter actiniarum KMM 6156, DSM 19842 0.32 CA264_15020 DNA helicase RecG 0.35 CA264_16535 DNA polymerase I — —
Pedobacter sp. GW460-11-11-14-LB5 0.32 CA265_RS22835 ATP-dependent DNA helicase RecG 0.36 CA265_RS19630 DNA polymerase I 0.37 30
Echinicola vietnamensis KMM 6221, DSM 17526 0.31 Echvi_1162 ATP-dependent DNA helicase RecG 0.36 Echvi_1032 DNA polymerase I low > 79
Mucilaginibacter yixingensis YX-36 DSM 26809 0.31 ABZR88_RS17240 ATP-dependent DNA helicase RecG 0.37 ABZR88_RS20185 DNA polymerase I low > 71
Rhodopseudomonas palustris CGA009 0.30 TX73_013795 ATP-dependent DNA helicase RecG 0.36 TX73_024545 DNA polymerase I low > 86
Bosea sp. OAE506 0.30 ABIE41_RS15815 ATP-dependent DNA helicase RecG 0.31 ABIE41_RS03570 DNA polymerase I 0.41 24
Brevundimonas sp. GW460-12-10-14-LB2 0.29 A4249_RS04765 ATP-dependent DNA helicase RecG 0.39 A4249_RS13840 DNA polymerase I — —
Rhodospirillum rubrum S1H 0.28 Rru_A1728 ATP-dependent DNA helicase RecG (NCBI) 0.36 Rru_A3514 DNA polymerase A (NCBI) — —
Mycobacterium tuberculosis H37Rv 0.25 Rv2973c Probable ATP-dependent DNA helicase RecG 0.26 Rv1629 Probable DNA polymerase I PolA — —

Not shown: 2 genomes with orthologs for PP_5310 only; 2 genomes with orthologs for PP_0123 only