Conservation of cofitness between PP_0832 and PP_0123 in Pseudomonas putida KT2440

96 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_0832 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 1.0 PP_0123 DNA polymerase I, 5 0.48 2
Pseudomonas fluorescens FW300-N2E3 0.91 AO353_15785 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.80 AO353_10930 DNA polymerase I low > 101
Pseudomonas syringae pv. syringae B728a ΔmexB 0.89 Psyr_1227 Queuosine biosynthesis protein 0.79 Psyr_0270 DNA polymerase I low > 86
Pseudomonas syringae pv. syringae B728a 0.89 Psyr_1227 Queuosine biosynthesis protein 0.79 Psyr_0270 DNA polymerase I low > 86
Pseudomonas fluorescens GW456-L13 0.89 PfGW456L13_4883 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) 0.76 PfGW456L13_594 DNA polymerase I (EC 2.7.7.7) low > 87
Pseudomonas fluorescens FW300-N1B4 0.89 Pf1N1B4_3005 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) 0.79 Pf1N1B4_1875 DNA polymerase I (EC 2.7.7.7) — —
Pseudomonas fluorescens SBW25 0.88 PFLU_RS24905 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.77 PFLU_RS00395 DNA polymerase I low > 109
Pseudomonas fluorescens SBW25-INTG 0.88 PFLU_RS24905 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.77 PFLU_RS00395 DNA polymerase I 0.34 98
Pseudomonas fluorescens FW300-N2C3 0.87 AO356_06695 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.80 AO356_11465 DNA polymerase I low > 104
Pseudomonas sp. RS175 0.87 PFR28_00276 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.79 PFR28_04624 DNA polymerase I low > 88
Pseudomonas fluorescens FW300-N2E2 0.87 Pf6N2E2_3199 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) 0.80 Pf6N2E2_4162 DNA polymerase I (EC 2.7.7.7) low > 103
Pseudomonas simiae WCS417 0.87 PS417_23250 S-adenosylmethionine tRNA ribosyltransferase 0.79 PS417_00405 DNA polymerase I low > 88
Pseudomonas sp. S08-1 0.86 OH686_17425 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.77 OH686_12215 DNA polymerase I low > 80
Pseudomonas stutzeri RCH2 0.83 Psest_1241 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.77 Psest_4219 DNA polymerase I low > 67
Shewanella oneidensis MR-1 0.71 SO3114 queA S-adenosylmethionine:tRNA ribosyltransferase-isomerase (NCBI ptt file) 0.60 SO4669 polA DNA polymerase I (NCBI ptt file) — —
Serratia liquefaciens MT49 0.71 IAI46_04835 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.60 IAI46_24985 DNA polymerase I low > 86
Shewanella loihica PV-4 0.70 Shew_2338 S-adenosylmethionine--tRNA-ribosyltransferase-isomerase (RefSeq) 0.60 Shew_3714 DNA polymerase I (RefSeq) — —
Rahnella sp. WP5 0.70 EX31_RS22090 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.61 EX31_RS15905 DNA polymerase I low > 89
Enterobacter asburiae PDN3 0.70 EX28DRAFT_2566 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.60 EX28DRAFT_4343 DNA polymerase I (EC 2.7.7.7) — —
Shewanella sp. ANA-3 0.70 Shewana3_1434 queA S-adenosylmethionine:tRNA ribosyltransferase-isomerase (RefSeq) 0.61 Shewana3_4109 DNA polymerase I (RefSeq) — —
Dickeya dianthicola ME23 0.70 DZA65_RS05850 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.59 DZA65_RS22235 DNA polymerase I — —
Klebsiella michiganensis M5al 0.70 BWI76_RS06295 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.59 BWI76_RS00355 DNA polymerase I low > 92
Dickeya dianthicola 67-19 0.70 HGI48_RS05525 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.59 HGI48_RS21260 DNA polymerase I — —
Escherichia coli ECOR27 0.70 NOLOHH_01445 queA tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.61 NOLOHH_06280 polA DNA polymerase I — —
Dickeya dadantii 3937 0.70 DDA3937_RS05465 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.59 DDA3937_RS00105 DNA polymerase I — —
Escherichia coli ECRC101 0.70 MCAODC_27735 queA tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.61 MCAODC_04650 polA DNA polymerase I — —
Escherichia coli BL21 0.70 ECD_00353 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.61 ECD_03749 5 — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.70 OHPLBJKB_03271 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.61 OHPLBJKB_04189 DNA polymerase I — —
Pantoea sp. MT58 0.70 IAI47_14810 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.60 IAI47_00430 DNA polymerase I low > 76
Escherichia coli ECRC62 0.70 BNILDI_22860 queA tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.61 BNILDI_05250 polA DNA polymerase I — —
Escherichia coli BW25113 0.70 b0405 queA S-adenosylmethionine:tRNA ribosyltransferase-isomerase (NCBI) 0.61 b3863 polA DNA polymerase I (NCBI) low > 76
Escherichia coli ECRC98 0.70 JDDGAC_12165 queA tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.61 JDDGAC_17775 polA DNA polymerase I — —
Escherichia coli ECRC101 0.70 OKFHMN_08510 queA tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.61 OKFHMN_14150 polA DNA polymerase I — —
Escherichia coli ECRC102 0.70 NIAGMN_06565 queA tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.61 NIAGMN_11905 polA DNA polymerase I — —
Escherichia coli ECRC99 0.70 KEDOAH_19455 queA tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.61 KEDOAH_14000 polA DNA polymerase I — —
Escherichia fergusonii Becca 0.70 EFB2_03652 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.60 EFB2_04753 DNA polymerase I — —
Escherichia coli ECOR38 0.69 HEPCGN_07150 queA tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.61 HEPCGN_12785 polA DNA polymerase I — —
Enterobacter sp. TBS_079 0.69 MPMX20_00996 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.60 MPMX20_04601 DNA polymerase I low > 85
Escherichia coli Nissle 1917 0.69 ECOLIN_RS02440 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.61 ECOLIN_RS22270 DNA polymerase I — —
Erwinia tracheiphila SCR3 0.69 LU632_RS18485 queA tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.61 LU632_RS23870 polA DNA polymerase I — —
Shewanella amazonensis SB2B 0.69 Sama_2194 queA S-adenosylmethionine:tRNA ribosyltransferase-isomerase (RefSeq) 0.61 Sama_0093 DNA-directed DNA polymerase (RefSeq) low > 62
Pectobacterium carotovorum WPP14 0.69 HER17_RS15995 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.61 HER17_RS21470 DNA polymerase I — —
Vibrio cholerae E7946 ATCC 55056 0.68 CSW01_03840 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.61 CSW01_00560 DNA polymerase I low > 62
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.68 GFF4304 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) 0.60 GFF2216 DNA polymerase I (EC 2.7.7.7) low > 78
Marinobacter adhaerens HP15 0.66 HP15_1478 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.56 HP15_293 DNA polymerase I low > 73
Alteromonas macleodii MIT1002 0.62 MIT1002_02814 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.62 MIT1002_00014 DNA polymerase I low > 70
Kangiella aquimarina DSM 16071 0.61 B158DRAFT_2515 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.57 B158DRAFT_0499 DNA polymerase I (EC 2.7.7.7) low > 40
Cupriavidus basilensis FW507-4G11 0.55 RR42_RS17395 S-adenosylmethionine tRNA ribosyltransferase 0.52 RR42_RS15050 DNA polymerase I low > 128
Ralstonia solanacearum GMI1000 0.55 RS_RS13570 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.51 RS_RS11195 DNA polymerase I low > 80
Herbaspirillum seropedicae SmR1 0.54 HSERO_RS06170 S-adenosylmethionine tRNA ribosyltransferase 0.53 HSERO_RS02260 DNA polymerase I 0.25 40
Ralstonia sp. UNC404CL21Col 0.54 ABZR87_RS01275 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.52 ABZR87_RS15680 DNA polymerase I 0.49 79
Ralstonia solanacearum IBSBF1503 0.54 RALBFv3_RS05680 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.51 RALBFv3_RS03750 DNA polymerase I low > 76
Ralstonia solanacearum PSI07 0.54 RPSI07_RS11620 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.51 RPSI07_RS13480 DNA polymerase I low > 81
Ralstonia solanacearum UW163 0.54 UW163_RS07945 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.51 UW163_RS09920 DNA polymerase I — —
Xanthomonas campestris pv. campestris strain 8004 0.54 Xcc-8004.2167.1 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) 0.52 Xcc-8004.5105.1 DNA polymerase I (EC 2.7.7.7) — —
Rhodanobacter denitrificans FW104-10B01 0.54 LRK54_RS03135 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.56 LRK54_RS06840 DNA polymerase I low > 59
Rhodanobacter denitrificans MT42 0.54 LRK55_RS02885 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.56 LRK55_RS06585 DNA polymerase I low > 63
Acinetobacter radioresistens SK82 0.53 MPMX26_00441 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.48 MPMX26_00574 DNA polymerase I low > 36
Castellaniella sp019104865 MT123 0.53 ABCV34_RS15370 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.47 ABCV34_RS02195 DNA polymerase I low > 48
Rhodanobacter sp. FW510-T8 0.53 OKGIIK_10005 queA tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.56 OKGIIK_16785 polA DNA polymerase I low > 52
Lysobacter sp. OAE881 0.51 ABIE51_RS15025 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.52 ABIE51_RS02010 DNA polymerase I low > 62
Dyella japonica UNC79MFTsu3.2 0.51 ABZR86_RS09545 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.55 ABZR86_RS17015 DNA polymerase I low > 74
Variovorax sp. OAS795 0.51 ABID97_RS01590 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.48 ABID97_RS09180 DNA polymerase I 0.36 74
Variovorax sp. SCN45 0.50 GFF5535 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 2.4.99.17) 0.49 GFF4006 DNA polymerase I (EC 2.7.7.7) low > 127
Dechlorosoma suillum PS 0.50 Dsui_3322 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.52 Dsui_0459 DNA polymerase I low > 51
Burkholderia phytofirmans PsJN 0.50 BPHYT_RS03405 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.51 BPHYT_RS33610 DNA polymerase I low > 109
Acidovorax sp. GW101-3H11 0.49 Ac3H11_778 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) 0.48 Ac3H11_1648 DNA polymerase I (EC 2.7.7.7) — —
Paraburkholderia sabiae LMG 24235 0.49 QEN71_RS26635 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.52 QEN71_RS17885 DNA polymerase I — —
Paraburkholderia graminis OAS925 0.48 ABIE53_000832 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.51 ABIE53_004852 DNA polymerase-1 low > 113
Paraburkholderia bryophila 376MFSha3.1 0.48 H281DRAFT_04671 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.50 H281DRAFT_06022 DNA polymerase I low > 103
Hydrogenophaga sp. GW460-11-11-14-LB1 0.48 GFF2801 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-) 0.45 GFF5584 DNA polymerase I (EC 2.7.7.7) low > 90
Azospirillum brasilense Sp245 0.42 AZOBR_RS06300 S-adenosylmethionine tRNA ribosyltransferase 0.39 AZOBR_RS30685 DNA polymerase low > 97
Azospirillum sp. SherDot2 0.42 MPMX19_01696 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.38 MPMX19_04869 DNA polymerase I low > 112
Brevundimonas sp. GW460-12-10-14-LB2 0.41 A4249_RS08775 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.39 A4249_RS13840 DNA polymerase I — —
Fusobacterium nucleatum SB010 0.41 HUW76_03590 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.26 HUW76_04385 DNA polymerase I low > 35
Rhodospirillum rubrum S1H 0.40 Rru_A0281 Queuosine biosynthesis protein (NCBI) 0.36 Rru_A3514 DNA polymerase A (NCBI) — —
Rhizobium sp. OAE497 0.40 ABIE40_RS09430 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.31 ABIE40_RS00490 DNA polymerase I low > 107
Bosea sp. OAE506 0.40 ABIE41_RS17830 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.31 ABIE41_RS03570 DNA polymerase I low > 77
Agrobacterium fabrum C58 0.39 Atu1678 S-adenosylmethionine tRNA ribosyltransferase-isomerase 0.41 Atu0110 DNA polymerase I — —
Pontibacter actiniarum KMM 6156, DSM 19842 0.39 CA264_18125 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.35 CA264_16535 DNA polymerase I — —
Mucilaginibacter yixingensis YX-36 DSM 26809 0.39 ABZR88_RS03940 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.37 ABZR88_RS20185 DNA polymerase I — —
Dinoroseobacter shibae DFL-12 0.39 Dshi_1180 Queuosine biosynthesis protein (RefSeq) 0.40 Dshi_2909 DNA polymerase I (RefSeq) low > 64
Echinicola vietnamensis KMM 6221, DSM 17526 0.38 Echvi_0042 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.36 Echvi_1032 DNA polymerase I — —
Caulobacter crescentus NA1000 Δfur 0.38 CCNA_01658 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.40 CCNA_03577 DNA polymerase I low > 67
Caulobacter crescentus NA1000 0.38 CCNA_01658 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.40 CCNA_03577 DNA polymerase I low > 66
Phaeobacter inhibens DSM 17395 0.38 PGA1_c17420 S-adenosylmethionine:tRNA ribosyltransferase-isomerase QueA 0.39 PGA1_c31780 DNA polymerase I low > 62
Synechococcus elongatus PCC 7942 0.37 Synpcc7942_2348 queA S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.31 Synpcc7942_0194 polA DNA polymerase I — —
Pedobacter sp. GW460-11-11-14-LB5 0.37 CA265_RS07505 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.36 CA265_RS19630 DNA polymerase I — —
Sphingomonas koreensis DSMZ 15582 0.37 Ga0059261_1011 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.35 Ga0059261_2244 DNA polymerase I (EC 2.7.7.7) low > 68
Magnetospirillum magneticum AMB-1 0.37 AMB_RS03085 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.39 AMB_RS21305 DNA polymerase I — —
Desulfovibrio vulgaris Miyazaki F 0.37 DvMF_2053 S-adenosylmethionine/tRNA-ribosyltransferase- isomerase (RefSeq) 0.25 DvMF_1713 DNA polymerase I (RefSeq) — —
Phocaeicola vulgatus CL09T03C04 0.37 HMPREF1058_RS11320 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.35 HMPREF1058_RS11500 DNA polymerase I — —
Bacteroides ovatus ATCC 8483 0.36 BACOVA_02915 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.37 BACOVA_01357 DNA-directed DNA polymerase — —
Bacteroides thetaiotaomicron VPI-5482 0.36 BT3214 S-adenosylmethionine:tRNA ribosyltransferase-isomerase (NCBI ptt file) 0.36 BT3260 DNA polymerase I (NCBI ptt file) — —
Parabacteroides merdae CL09T00C40 0.36 HMPREF1078_RS17105 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.36 HMPREF1078_RS06335 DNA polymerase I — —
Bacteroides stercoris CC31F 0.35 HMPREF1181_RS01705 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.36 HMPREF1181_RS02070 DNA polymerase I — —
Rhodopseudomonas palustris CGA009 0.35 TX73_013480 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA 0.36 TX73_024545 DNA polymerase I low > 86

Not shown: 3 genomes with orthologs for PP_0832 only; 1 genomes with orthologs for PP_0123 only