Conservation of cofitness between IAI46_04840 and IAI46_01880 in Serratia liquefaciens MT49

95 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Serratia liquefaciens MT49 1.0 IAI46_04840 tRNA guanosine(34) transglycosylase Tgt 1.0 IAI46_01880 transcription elongation factor GreA 0.48 10
Rahnella sp. WP5 0.94 EX31_RS22095 tRNA guanosine(34) transglycosylase Tgt 0.89 EX31_RS08595 transcription elongation factor GreA low > 89
Pectobacterium carotovorum WPP14 0.94 HER17_RS15990 tRNA guanosine(34) transglycosylase Tgt 0.88 HER17_RS18330 transcription elongation factor GreA — —
Dickeya dianthicola ME23 0.93 DZA65_RS05855 tRNA guanosine(34) transglycosylase Tgt 0.86 DZA65_RS03180 transcription elongation factor GreA low > 75
Dickeya dadantii 3937 0.93 DDA3937_RS05470 tRNA guanosine(34) transglycosylase Tgt 0.87 DDA3937_RS03015 transcription elongation factor GreA — —
Dickeya dianthicola 67-19 0.93 HGI48_RS05530 tRNA guanosine(34) transglycosylase Tgt 0.86 HGI48_RS03185 transcription elongation factor GreA low > 71
Enterobacter sp. TBS_079 0.92 MPMX20_00997 Queuine tRNA-ribosyltransferase 0.88 MPMX20_04085 Transcription elongation factor GreA 0.35 48
Enterobacter asburiae PDN3 0.92 EX28DRAFT_2565 tRNA-guanine transglycosylase 0.88 EX28DRAFT_3232 transcription elongation factor GreA low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.92 GFF4305 tRNA-guanine transglycosylase (EC 2.4.2.29) 0.89 GFF2922 Transcription elongation factor GreA low > 78
Klebsiella michiganensis M5al 0.92 BWI76_RS06300 tRNA guanosine(34) transglycosylase Tgt 0.89 BWI76_RS25160 transcription elongation factor GreA — —
Pantoea sp. MT58 0.92 IAI47_14805 tRNA guanosine(34) transglycosylase Tgt 0.86 IAI47_17080 transcription elongation factor GreA low > 76
Escherichia coli ECOR38 0.91 HEPCGN_07145 tgt tRNA guanosine(34) transglycosylase Tgt 0.88 HEPCGN_16920 greA transcription elongation factor GreA 0.78 81
Escherichia coli ECRC101 0.91 MCAODC_27730 tgt tRNA guanosine(34) transglycosylase Tgt 0.88 MCAODC_08565 greA transcription elongation factor GreA low > 87
Escherichia coli ECRC99 0.91 KEDOAH_19460 tgt tRNA guanosine(34) transglycosylase Tgt 0.88 KEDOAH_10105 greA transcription elongation factor GreA — —
Escherichia coli BW25113 0.91 b0406 tgt queuine tRNA-ribosyltransferase (NCBI) 0.88 b3181 greA transcription elongation factor: cleaves 3' nucleotide of paused mRNA (VIMSS) low > 76
Escherichia fergusonii Becca 0.91 EFB2_03651 Queuine tRNA-ribosyltransferase 0.88 EFB2_00642 Transcription elongation factor GreA low > 86
Escherichia coli ECRC98 0.91 JDDGAC_12160 tgt tRNA guanosine(34) transglycosylase Tgt 0.88 JDDGAC_21670 greA transcription elongation factor GreA low > 86
Escherichia coli ECOR27 0.91 NOLOHH_01440 tgt tRNA guanosine(34) transglycosylase Tgt 0.88 NOLOHH_09845 greA transcription elongation factor GreA low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 0.91 OHPLBJKB_03270 Queuine tRNA-ribosyltransferase 0.88 OHPLBJKB_00519 Transcription elongation factor GreA 0.83 29
Escherichia coli ECRC102 0.91 NIAGMN_06560 tgt tRNA guanosine(34) transglycosylase Tgt 0.88 NIAGMN_15805 greA transcription elongation factor GreA — —
Escherichia coli ECRC62 0.91 BNILDI_22855 tgt tRNA guanosine(34) transglycosylase Tgt 0.88 BNILDI_01690 greA transcription elongation factor GreA low > 75
Escherichia coli Nissle 1917 0.91 ECOLIN_RS02445 tRNA guanosine(34) transglycosylase Tgt 0.88 ECOLIN_RS18320 transcription elongation factor GreA — —
Escherichia coli ECRC100 0.91 OKFHMN_08505 tgt tRNA guanosine(34) transglycosylase Tgt 0.88 OKFHMN_18045 greA transcription elongation factor GreA 0.74 54
Escherichia coli BL21 0.91 ECD_00354 tRNA-guanine transglycosylase 0.88 ECD_03046 transcript cleavage factor low > 61
Erwinia tracheiphila SCR3 0.89 LU632_RS18500 tgt tRNA guanosine(34) transglycosylase Tgt 0.79 LU632_RS21165 greA transcription elongation factor GreA low > 74
Vibrio cholerae E7946 ATCC 55056 0.84 CSW01_03850 tRNA guanosine(34) transglycosylase Tgt 0.58 CSW01_03330 transcription elongation factor GreA low > 62
Shewanella sp. ANA-3 0.83 Shewana3_1435 tgt queuine tRNA-ribosyltransferase (RefSeq) 0.72 Shewana3_1017 transcription elongation factor GreA (RefSeq) low > 73
Shewanella loihica PV-4 0.83 Shew_2337 tgt queuine tRNA-ribosyltransferase (RefSeq) 0.69 Shew_2837 transcription elongation factor GreA (RefSeq) low > 60
Shewanella oneidensis MR-1 0.83 SO3113 tgt queuine tRNA-ribosyltransferase (NCBI ptt file) 0.72 SO1191 greA transcription elongation factor GreA (NCBI ptt file) low > 76
Shewanella amazonensis SB2B 0.83 Sama_2193 tgt queuine tRNA-ribosyltransferase (RefSeq) 0.70 Sama_0951 GreA/GreB family elongation factor (RefSeq) low > 62
Alteromonas macleodii MIT1002 0.77 MIT1002_02813 Queuine tRNA-ribosyltransferase 0.74 MIT1002_01468 Transcript cleavage factor GreA low > 70
Pseudomonas sp. S08-1 0.76 OH686_17430 tRNA-guanine transglycosylase 0.58 OH686_17085 Transcription elongation factor GreA low > 80
Pseudomonas stutzeri RCH2 0.74 Psest_1242 tRNA-guanine transglycosylase, queuosine-34-forming 0.61 Psest_0969 transcription elongation factor GreA low > 67
Pseudomonas sp. RS175 0.74 PFR28_00277 Queuine tRNA-ribosyltransferase 0.56 PFR28_00078 Transcription elongation factor GreA — —
Pseudomonas fluorescens FW300-N1B4 0.74 Pf1N1B4_3006 tRNA-guanine transglycosylase (EC 2.4.2.29) 0.59 Pf1N1B4_1171 Transcription elongation factor GreA — —
Pseudomonas fluorescens FW300-N2E3 0.74 AO353_15790 queuine tRNA-ribosyltransferase 0.59 AO353_05625 transcription elongation factor GreA — —
Pseudomonas fluorescens FW300-N2E2 0.74 Pf6N2E2_3198 tRNA-guanine transglycosylase (EC 2.4.2.29) 0.58 Pf6N2E2_3363 Transcription elongation factor GreA — —
Pseudomonas putida KT2440 0.74 PP_0833 queuine tRNA-ribosyltransferase 0.56 PP_4722 Transcription elongation factor GreA low > 96
Pseudomonas fluorescens FW300-N2C3 0.74 AO356_06690 queuine tRNA-ribosyltransferase 0.57 AO356_07475 transcription elongation factor GreA — —
Pseudomonas fluorescens GW456-L13 0.73 PfGW456L13_4882 tRNA-guanine transglycosylase (EC 2.4.2.29) 0.57 PfGW456L13_5098 Transcription elongation factor GreA — —
Pseudomonas syringae pv. syringae B728a 0.73 Psyr_1228 tRNA-guanine transglycosylase 0.60 Psyr_4190 transcription elongation factor GreA — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.73 Psyr_1228 tRNA-guanine transglycosylase 0.60 Psyr_4190 transcription elongation factor GreA — —
Pseudomonas fluorescens SBW25 0.73 PFLU_RS24900 tRNA guanosine(34) transglycosylase Tgt 0.59 PFLU_RS25875 transcription elongation factor GreA 0.44 33
Pseudomonas fluorescens SBW25-INTG 0.73 PFLU_RS24900 tRNA guanosine(34) transglycosylase Tgt 0.59 PFLU_RS25875 transcription elongation factor GreA low > 109
Pseudomonas simiae WCS417 0.73 PS417_23245 queuine tRNA-ribosyltransferase 0.58 PS417_24035 transcription elongation factor GreA — —
Kangiella aquimarina DSM 16071 0.73 B158DRAFT_2516 tRNA-guanine transglycosylase (EC 2.4.2.29) 0.69 B158DRAFT_0617 transcription elongation factor GreA low > 40
Marinobacter adhaerens HP15 0.73 HP15_1479 queuine tRNA-ribosyltransferase 0.64 HP15_3076 protein containing prokaryotic transcription elongation factor GreA domain low > 73
Acinetobacter radioresistens SK82 0.69 MPMX26_00438 Queuine tRNA-ribosyltransferase 0.66 MPMX26_00765 Transcription elongation factor GreA low > 36
Dyella japonica UNC79MFTsu3.2 0.68 ABZR86_RS09540 tRNA guanosine(34) transglycosylase Tgt 0.51 ABZR86_RS05595 transcription elongation factor GreA low > 74
Dechlorosoma suillum PS 0.67 Dsui_3323 tRNA-guanine transglycosylase, queuosine-34-forming 0.58 Dsui_3063 transcription elongation factor GreA low > 51
Rhodanobacter denitrificans FW104-10B01 0.66 LRK54_RS03130 tRNA guanosine(34) transglycosylase Tgt 0.50 LRK54_RS18005 transcription elongation factor GreA low > 59
Rhodanobacter denitrificans MT42 0.66 LRK55_RS02880 tRNA guanosine(34) transglycosylase Tgt 0.50 LRK55_RS17860 transcription elongation factor GreA low > 63
Castellaniella sp019104865 MT123 0.65 ABCV34_RS15365 tRNA guanosine(34) transglycosylase Tgt 0.55 ABCV34_RS15540 transcription elongation factor GreA low > 48
Cupriavidus basilensis FW507-4G11 0.65 RR42_RS17400 queuine tRNA-ribosyltransferase 0.55 RR42_RS13505 transcription elongation factor GreA — —
Lysobacter sp. OAE881 0.65 ABIE51_RS15020 tRNA guanosine(34) transglycosylase Tgt 0.58 ABIE51_RS11610 transcription elongation factor GreA low > 62
Rhodanobacter sp. FW510-T8 0.65 OKGIIK_10000 tgt tRNA guanosine(34) transglycosylase Tgt 0.50 OKGIIK_07290 greA transcription elongation factor GreA low > 52
Herbaspirillum seropedicae SmR1 0.64 HSERO_RS06175 queuine tRNA-ribosyltransferase 0.52 HSERO_RS06930 transcription elongation factor GreA — —
Ralstonia sp. UNC404CL21Col 0.64 ABZR87_RS01280 tRNA guanosine(34) transglycosylase Tgt 0.56 ABZR87_RS14135 transcription elongation factor GreA low > 80
Ralstonia solanacearum IBSBF1503 0.63 RALBFv3_RS05685 tRNA guanosine(34) transglycosylase Tgt 0.55 RALBFv3_RS02185 transcription elongation factor GreA low > 76
Ralstonia solanacearum UW163 0.63 UW163_RS07940 tRNA guanosine(34) transglycosylase Tgt 0.55 UW163_RS15495 transcription elongation factor GreA — —
Xanthomonas campestris pv. campestris strain 8004 0.63 Xcc-8004.2168.1 tRNA-guanine transglycosylase (EC 2.4.2.29) 0.59 Xcc-8004.2911.1 Transcription elongation factor GreA low > 74
Ralstonia solanacearum GMI1000 0.63 RS_RS13575 tRNA guanosine(34) transglycosylase Tgt 0.54 RS_RS07635 transcription elongation factor GreA — —
Paraburkholderia sabiae LMG 24235 0.62 QEN71_RS26640 tRNA guanosine(34) transglycosylase Tgt 0.58 QEN71_RS04785 transcription elongation factor GreA 0.85 2
Paraburkholderia bryophila 376MFSha3.1 0.62 H281DRAFT_04670 tRNA-guanine transglycosylase 0.56 H281DRAFT_04404 GreA/GreB family elongation factor low > 103
Ralstonia solanacearum PSI07 0.62 RPSI07_RS11615 tRNA guanosine(34) transglycosylase Tgt 0.57 RPSI07_RS15260 transcription elongation factor GreA low > 81
Burkholderia phytofirmans PsJN 0.62 BPHYT_RS03410 queuine tRNA-ribosyltransferase 0.57 BPHYT_RS14185 transcription elongation factor GreA low > 109
Hydrogenophaga sp. GW460-11-11-14-LB1 0.60 GFF2798 tRNA-guanine transglycosylase (EC 2.4.2.29) 0.54 GFF4897 Transcription elongation factor GreA low > 90
Acidovorax sp. GW101-3H11 0.58 Ac3H11_861 tRNA-guanine transglycosylase (EC 2.4.2.29) 0.55 Ac3H11_437 Transcription elongation factor GreA low > 79
Variovorax sp. OAS795 0.57 ABID97_RS01595 tRNA guanosine(34) transglycosylase Tgt 0.52 ABID97_RS17070 transcription elongation factor GreA low > 91
Variovorax sp. SCN45 0.57 GFF5534 Queuine tRNA-ribosyltransferase (EC 2.4.2.29) 0.52 GFF374 Transcription elongation factor GreA low > 127
Rhodospirillum rubrum S1H 0.55 Rru_A0280 Queuine tRNA-ribosyltransferase (NCBI) 0.51 Rru_A2887 GreA/GreB family elongation factor (NCBI) low > 58
Magnetospirillum magneticum AMB-1 0.54 AMB_RS03090 tRNA guanosine(34) transglycosylase Tgt 0.50 AMB_RS03610 transcription elongation factor GreA low > 64
Phaeobacter inhibens DSM 17395 0.53 PGA1_c20570 queuine tRNA-ribosyltransferase Tgt 0.51 PGA1_c03290 transcription elongation factor GreA low > 62
Azospirillum brasilense Sp245 0.53 AZOBR_RS06295 queuine tRNA-ribosyltransferase 0.51 AZOBR_RS12900 transcription elongation factor GreA — —
Dinoroseobacter shibae DFL-12 0.53 Dshi_2346 queuine tRNA-ribosyltransferase (RefSeq) 0.55 Dshi_3076 transcription elongation factor GreA (RefSeq) low > 64
Azospirillum sp. SherDot2 0.53 MPMX19_01697 Queuine tRNA-ribosyltransferase 0.54 MPMX19_02300 Transcription elongation factor GreA low > 112
Sphingomonas koreensis DSMZ 15582 0.51 Ga0059261_1017 tRNA-guanine transglycosylase 0.43 Ga0059261_0008 transcription elongation factor GreA — —
Rhodopseudomonas palustris CGA009 0.51 TX73_013485 tRNA guanosine(34) transglycosylase Tgt 0.49 TX73_021095 transcription elongation factor GreA — —
Brevundimonas sp. GW460-12-10-14-LB2 0.51 A4249_RS02905 tRNA guanosine(34) transglycosylase Tgt 0.56 A4249_RS00695 transcription elongation factor GreA — —
Sinorhizobium meliloti 1021 0.51 SMc01206 queuine tRNA-ribosyltransferase 0.49 SMc01218 transcription elongation factor GreA — —
Bosea sp. OAE506 0.51 ABIE41_RS18290 tRNA guanosine(34) transglycosylase Tgt 0.48 ABIE41_RS11905 transcription elongation factor GreA — —
Caulobacter crescentus NA1000 Δfur 0.50 CCNA_01659 queuine tRNA-ribosyltransferase 0.58 CCNA_02941 transcription elongation factor greA low > 67
Caulobacter crescentus NA1000 0.50 CCNA_01659 queuine tRNA-ribosyltransferase 0.58 CCNA_02941 transcription elongation factor greA low > 66
Desulfovibrio vulgaris Miyazaki F 0.50 DvMF_2757 tgt queuine tRNA-ribosyltransferase (RefSeq) 0.43 DvMF_0383 greA transcription elongation factor GreA (RefSeq) low > 51
Desulfovibrio vulgaris Hildenborough JW710 0.50 DVU0726 tgt queuine tRNA-ribosyltransferase (TIGR) 0.43 DVU3245 greA transcription elongation factor GreA (TIGR) 0.46 16
Agrobacterium fabrum C58 0.49 Atu1677 queuine tRNA-ribosyltransferase 0.50 Atu2182 transcription elongation facto — —
Mucilaginibacter yixingensis YX-36 DSM 26809 0.47 ABZR88_RS13980 tRNA guanosine(34) transglycosylase Tgt 0.36 ABZR88_RS00130 transcription elongation factor GreA 0.49 30
Echinicola vietnamensis KMM 6221, DSM 17526 0.47 Echvi_2049 tRNA-guanine transglycosylase, queuosine-34-forming 0.35 Echvi_0180 transcription elongation factor GreA low > 79
Parabacteroides merdae CL09T00C40 0.47 HMPREF1078_RS01080 tRNA guanosine(34) transglycosylase Tgt 0.37 HMPREF1078_RS17725 transcription elongation factor GreA low > 61
Pontibacter actiniarum KMM 6156, DSM 19842 0.47 CA264_00655 tRNA-guanine(34) transglycosylase 0.32 CA264_03870 transcription elongation factor GreA low > 74
Bacteroides stercoris CC31F 0.46 HMPREF1181_RS14345 tRNA guanosine(34) transglycosylase Tgt 0.36 HMPREF1181_RS00805 transcription elongation factor GreA — —
Pedobacter sp. GW460-11-11-14-LB5 0.46 CA265_RS13030 tRNA guanosine(34) transglycosylase Tgt 0.35 CA265_RS23190 transcription elongation factor GreA 0.52 63
Phocaeicola dorei CL03T12C01 0.46 ABI39_RS16515 tRNA guanosine(34) transglycosylase Tgt 0.38 ABI39_RS04145 transcription elongation factor GreA low > 72
Phocaeicola vulgatus CL09T03C04 0.46 HMPREF1058_RS01215 tRNA guanosine(34) transglycosylase Tgt 0.37 HMPREF1058_RS12565 transcription elongation factor GreA — —
Bacteroides thetaiotaomicron VPI-5482 0.45 BT0835 tRNA-guanine transglycosylase (NCBI ptt file) 0.36 BT2565 transcription elongation factor greA (NCBI ptt file) — —
Bacteroides ovatus ATCC 8483 0.45 BACOVA_02570 tRNA-guanine transglycosylase 0.36 BACOVA_01643 prokaryotic transcription elongation factor, GreA/GreB domain protein low > 94

Not shown: 4 genomes with orthologs for IAI46_04840 only; 2 genomes with orthologs for IAI46_01880 only