Conservation of cofitness between HER17_RS02805 and HER17_RS03070 in Pectobacterium carotovorum WPP14

93 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pectobacterium carotovorum WPP14 1.0 HER17_RS02805 threonine synthase 1.0 HER17_RS03070 3-isopropylmalate dehydratase small subunit 0.94 13
Dickeya dadantii 3937 0.88 DDA3937_RS18405 threonine synthase 0.89 DDA3937_RS18130 3-isopropylmalate dehydratase small subunit low > 74
Dickeya dianthicola ME23 0.87 DZA65_RS19475 threonine synthase 0.88 DZA65_RS19215 3-isopropylmalate dehydratase small subunit 0.71 9
Dickeya dianthicola 67-19 0.87 HGI48_RS18335 threonine synthase 0.87 HGI48_RS18070 3-isopropylmalate dehydratase small subunit 0.69 16
Rahnella sp. WP5 0.86 EX31_RS03935 threonine synthase 0.87 EX31_RS03695 3-isopropylmalate dehydratase small subunit 0.97 23
Serratia liquefaciens MT49 0.86 IAI46_03040 threonine synthase 0.89 IAI46_03340 3-isopropylmalate dehydratase small subunit low > 86
Pantoea sp. MT58 0.83 IAI47_16205 threonine synthase 0.85 IAI47_16015 3-isopropylmalate dehydratase small subunit 0.93 17
Erwinia tracheiphila SCR3 0.82 LU632_RS02620 thrC threonine synthase 0.73 LU632_RS02865 leuD 3-isopropylmalate dehydratase small subunit
Enterobacter asburiae PDN3 0.82 EX28DRAFT_3616 threonine synthase 0.83 EX28DRAFT_3667 3-isopropylmalate dehydratase, small subunit 0.49 40
Enterobacter sp. TBS_079 0.82 MPMX20_00712 Threonine synthase 0.82 MPMX20_00766 3-isopropylmalate dehydratase small subunit 1 0.90 35
Klebsiella michiganensis M5al 0.81 BWI76_RS04255 threonine synthase 0.84 BWI76_RS04665 3-isopropylmalate dehydratase small subunit 0.95 4
Escherichia coli ECRC102 0.79 NIAGMN_08950 thrC threonine synthase 0.81 NIAGMN_08580 leuD 3-isopropylmalate dehydratase small subunit
Escherichia fergusonii Becca 0.79 EFB2_04039 Threonine synthase 0.82 EFB2_03974 3-isopropylmalate dehydratase small subunit low > 86
Escherichia coli BL21 0.79 ECD_00004 L-threonine synthase 0.82 ECD_00073 3-isopropylmalate dehydratase small subunit 0.91 21
Escherichia coli ECOR27 0.79 NOLOHH_03430 thrC threonine synthase 0.82 NOLOHH_03075 leuD 3-isopropylmalate dehydratase small subunit 0.92 39
Escherichia coli ECOR38 0.79 HEPCGN_09105 thrC threonine synthase 0.82 HEPCGN_08710 leuD 3-isopropylmalate dehydratase small subunit 0.92 24
Escherichia coli ECRC100 0.79 OKFHMN_11100 thrC threonine synthase 0.81 OKFHMN_10730 leuD 3-isopropylmalate dehydratase small subunit 0.96 44
Escherichia coli ECRC62 0.79 BNILDI_08170 thrC threonine synthase 0.82 BNILDI_08535 leuD 3-isopropylmalate dehydratase small subunit 0.94 3
Escherichia coli ECRC101 0.79 MCAODC_01615 thrC threonine synthase 0.81 MCAODC_01245 leuD 3-isopropylmalate dehydratase small subunit 0.86 24
Escherichia coli ECRC99 0.79 KEDOAH_17055 thrC threonine synthase 0.81 KEDOAH_17425 leuD 3-isopropylmalate dehydratase small subunit
Escherichia coli ECRC98 0.79 JDDGAC_14695 thrC threonine synthase 0.81 JDDGAC_14325 leuD 3-isopropylmalate dehydratase small subunit 0.87 30
Escherichia coli HS(pFamp)R (ATCC 700891) 0.79 OHPLBJKB_03656 Threonine synthase 0.82 OHPLBJKB_03586 3-isopropylmalate dehydratase small subunit low > 73
Escherichia coli BW25113 0.79 b0004 thrC threonine synthase (NCBI) 0.82 b0071 leuD isopropylmalate isomerase small subunit (NCBI) 0.89 35
Escherichia coli Nissle 1917 0.79 ECOLIN_RS00020 threonine synthase 0.82 ECOLIN_RS00385 3-isopropylmalate dehydratase small subunit low > 55
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.79 GFF1080 Threonine synthase (EC 4.2.3.1) 0.83 GFF167 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) low > 78
Vibrio cholerae E7946 ATCC 55056 0.69 CSW01_11965 threonine synthase 0.78 CSW01_12610 3-isopropylmalate dehydratase small subunit low > 62
Alteromonas macleodii MIT1002 0.62 MIT1002_03084 Threonine synthase 0.60 MIT1002_00946 3-isopropylmalate dehydratase small subunit 1 0.86 55
Shewanella loihica PV-4 0.58 Shew_1081 threonine synthase (RefSeq) 0.64 Shew_3469 isopropylmalate isomerase small subunit (RefSeq) 0.98 16
Shewanella sp. ANA-3 0.55 Shewana3_1141 threonine synthase (RefSeq) 0.62 Shewana3_3758 leuD isopropylmalate isomerase small subunit (RefSeq) 0.94 13
Shewanella oneidensis MR-1 0.55 SO3413 thrC threonine synthase (NCBI ptt file) 0.64 SO4233 leuD 3-isopropylmalate dehydratase, small subunit (NCBI ptt file) 0.96 19
Shewanella amazonensis SB2B 0.55 Sama_0907 threonine synthase (RefSeq) 0.64 Sama_0338 leuD isopropylmalate isomerase small subunit (RefSeq) 0.93 30
Bacteroides thetaiotaomicron VPI-5482 0.42 BT2401 threonine synthase (NCBI ptt file) 0.37 BT1859 3-isopropylmalate dehydratase small subunit (NCBI ptt file) 0.82 45
Bacteroides ovatus ATCC 8483 0.41 BACOVA_03023 threonine synthase 0.39 BACOVA_04602 3-isopropylmalate dehydratase, small subunit 0.94 26
Phocaeicola vulgatus CL09T03C04 0.41 HMPREF1058_RS14730 threonine synthase 0.38 HMPREF1058_RS14555 3-isopropylmalate dehydratase small subunit 0.79 41
Phocaeicola dorei CL03T12C01 0.41 ABI39_RS10440 threonine synthase 0.39 ABI39_RS10205 3-isopropylmalate dehydratase small subunit 0.83 16
Bacteroides stercoris CC31F 0.41 HMPREF1181_RS00050 threonine synthase 0.40 HMPREF1181_RS14140 3-isopropylmalate dehydratase small subunit 0.86 45
Parabacteroides merdae CL09T00C40 0.39 HMPREF1078_RS10395 threonine synthase 0.38 HMPREF1078_RS16655 3-isopropylmalate dehydratase small subunit low > 61
Echinicola vietnamensis KMM 6221, DSM 17526 0.39 Echvi_2002 threonine synthase 0.39 Echvi_2060 3-isopropylmalate dehydratase, small subunit
Mucilaginibacter yixingensis YX-36 DSM 26809 0.37 ABZR88_RS18960 threonine synthase 0.46 ABZR88_RS11600 3-isopropylmalate dehydratase small subunit
Pedobacter sp. GW460-11-11-14-LB5 0.37 CA265_RS23465 threonine synthase 0.47 CA265_RS15840 3-isopropylmalate dehydratase small subunit 0.84 31
Xanthomonas campestris pv. campestris strain 8004 0.30 Xcc-8004.2954.1 Threonine synthase (EC 4.2.3.1) 0.60 Xcc-8004.1050.1 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) 0.74 56
Lysobacter sp. OAE881 0.29 ABIE51_RS17530 threonine synthase 0.39 ABIE51_RS17580 3-isopropylmalate dehydratase small subunit 0.90 56
Phaeobacter inhibens DSM 17395 0.29 PGA1_c06310 threonine synthase ThrC 0.47 PGA1_c29790 3-isopropylmalate dehydratase small subunit
Pseudomonas fluorescens FW300-N2E2 0.28 Pf6N2E2_3142 Threonine synthase (EC 4.2.3.1) 0.59 Pf6N2E2_64 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33)
Pseudomonas fluorescens FW300-N2C3 0.28 AO356_06370 threonine synthase 0.59 AO356_21405 3-isopropylmalate dehydratase
Pseudomonas fluorescens FW300-N2E3 0.28 AO353_04350 threonine synthase 0.59 AO353_20625 3-isopropylmalate dehydratase
Pseudomonas putida KT2440 0.28 PP_1471 Threonine synthase 0.61 PP_1986 3-isopropylmalate dehydratase small subunit
Pseudomonas syringae pv. syringae B728a ΔmexB 0.28 Psyr_1291 L-threonine synthase 0.59 Psyr_1984 3-isopropylmalate dehydratase, small subunit
Pseudomonas syringae pv. syringae B728a 0.28 Psyr_1291 L-threonine synthase 0.59 Psyr_1984 3-isopropylmalate dehydratase, small subunit
Rhodanobacter denitrificans MT42 0.28 LRK55_RS09995 threonine synthase 0.42 LRK55_RS07100 3-isopropylmalate dehydratase small subunit low > 63
Rhodanobacter denitrificans FW104-10B01 0.28 LRK54_RS10355 threonine synthase 0.42 LRK54_RS07370 3-isopropylmalate dehydratase small subunit low > 59
Pseudomonas sp. S08-1 0.28 OH686_17765 threonine synthase 0.61 OH686_04475 3-isopropylmalate dehydratase small subunit low > 80
Pseudomonas fluorescens FW300-N1B4 0.28 Pf1N1B4_3014 Threonine synthase (EC 4.2.3.1) 0.59 Pf1N1B4_14 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33)
Pseudomonas fluorescens GW456-L13 0.28 PfGW456L13_1724 Threonine synthase (EC 4.2.3.1) 0.59 PfGW456L13_3947 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33)
Pseudomonas simiae WCS417 0.28 PS417_22880 threonine synthase 0.62 PS417_18595 3-isopropylmalate dehydratase
Pseudomonas fluorescens SBW25 0.27 PFLU_RS24545 threonine synthase 0.61 PFLU_RS20575 3-isopropylmalate dehydratase small subunit low > 109
Pseudomonas fluorescens SBW25-INTG 0.27 PFLU_RS24545 threonine synthase 0.61 PFLU_RS20575 3-isopropylmalate dehydratase small subunit
Pseudomonas sp. RS175 0.27 PFR28_00334 Threonine synthase 0.59 PFR28_02823 3-isopropylmalate dehydratase small subunit 1
Dyella japonica UNC79MFTsu3.2 0.27 ABZR86_RS15975 threonine synthase (EC 4.2.3.1) (from data) 0.40 ABZR86_RS15955 3-isopropylmalate dehydratase small subunit 0.91 65
Rhodanobacter sp. FW510-T8 0.27 OKGIIK_13570 thrC threonine synthase 0.40 OKGIIK_13590 leuD 3-isopropylmalate dehydratase small subunit low > 52
Sinorhizobium meliloti 1021 0.27 SMc00077 threonine synthase 0.50 SMc03795 isopropylmalate isomerase small subunit
Bosea sp. OAE506 0.27 ABIE41_RS22985 threonine synthase 0.49 ABIE41_RS11640 3-isopropylmalate dehydratase small subunit
Caulobacter crescentus NA1000 Δfur 0.27 CCNA_03510 threonine synthase 0.45 CCNA_00195 3-isopropylmalate dehydratase small subunit
Caulobacter crescentus NA1000 0.27 CCNA_03510 threonine synthase 0.45 CCNA_00195 3-isopropylmalate dehydratase small subunit
Pseudomonas stutzeri RCH2 0.27 Psest_3125 threonine synthase 0.63 Psest_2590 3-isopropylmalate dehydratase, small subunit
Dinoroseobacter shibae DFL-12 0.26 Dshi_1146 threonine synthase (RefSeq) 0.51 Dshi_0083 3-isopropylmalate dehydratase, small subunit (RefSeq)
Agrobacterium fabrum C58 0.26 Atu0787 threonine synthase 0.51 Atu2790 3-isopropylmalate dehydratase, small subunit
Rhodospirillum rubrum S1H 0.26 Rru_A3233 Threonine synthase (NCBI) 0.52 Rru_A1190 3-isopropylmalate dehydratase small subunit region (NCBI)
Azospirillum sp. SherDot2 0.26 MPMX19_00671 Threonine synthase 0.52 MPMX19_00606 3-isopropylmalate dehydratase small subunit 1
Rhizobium sp. OAE497 0.26 ABIE40_RS04230 threonine synthase 0.48 ABIE40_RS19040 3-isopropylmalate dehydratase small subunit
Azospirillum brasilense Sp245 0.26 AZOBR_RS10545 threonine synthase 0.50 AZOBR_RS14135 isopropylmalate isomerase
Marinobacter adhaerens HP15 0.25 HP15_765 threonine synthase 0.57 HP15_1833 isopropylmalate isomerase small subunit
Rhodopseudomonas palustris CGA009 0.25 TX73_004325 threonine synthase 0.51 TX73_001215 3-isopropylmalate dehydratase small subunit
Castellaniella sp019104865 MT123 0.24 ABCV34_RS02300 threonine synthase 0.55 ABCV34_RS04285 3-isopropylmalate dehydratase small subunit
Brevundimonas sp. GW460-12-10-14-LB2 0.24 A4249_RS00020 threonine synthase 0.38 A4249_RS10000 3-isopropylmalate dehydratase small subunit 0.98 41
Magnetospirillum magneticum AMB-1 0.24 AMB_RS17140 threonine synthase 0.51 AMB_RS20565 3-isopropylmalate dehydratase small subunit
Dechlorosoma suillum PS 0.23 Dsui_2904 threonine synthase 0.55 Dsui_3199 3-isopropylmalate dehydratase, small subunit
Sphingomonas koreensis DSMZ 15582 0.23 Ga0059261_1999 threonine synthase 0.37 Ga0059261_4225 3-isopropylmalate dehydratase, small subunit 0.97 25
Hydrogenophaga sp. GW460-11-11-14-LB1 0.22 GFF3936 Threonine synthase (EC 4.2.3.1) 0.59 GFF3361 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33)
Variovorax sp. OAS795 0.22 ABID97_RS25760 threonine synthase 0.59 ABID97_RS08460 3-isopropylmalate dehydratase small subunit
Ralstonia sp. UNC404CL21Col 0.22 ABZR87_RS05865 threonine synthase 0.59 ABZR87_RS14535 3-isopropylmalate dehydratase small subunit low > 80
Paraburkholderia sabiae LMG 24235 0.22 QEN71_RS22400 threonine synthase 0.59 QEN71_RS17615 3-isopropylmalate dehydratase small subunit 0.72 52
Variovorax sp. SCN45 0.21 GFF2800 Threonine synthase (EC 4.2.3.1) 0.58 GFF3889 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33)
Herbaspirillum seropedicae SmR1 0.21 HSERO_RS10470 threonine synthase 0.57 HSERO_RS16505 3-isopropylmalate dehydratase small subunit
Acidovorax sp. GW101-3H11 0.21 Ac3H11_1505 Threonine synthase (EC 4.2.3.1) 0.56 Ac3H11_1527 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33)
Bifidobacterium breve UCC2003 0.21 BBR_RS14070 threonine synthase 0.43 BBR_RS19625 3-isopropylmalate dehydratase small subunit low > 34
Paraburkholderia graminis OAS925 0.21 ABIE53_002027 threonine synthase 0.59 ABIE53_004803 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit
Cupriavidus basilensis FW507-4G11 0.21 RR42_RS12535 threonine synthase 0.59 RR42_RS14390 3-isopropylmalate dehydratase
Paraburkholderia bryophila 376MFSha3.1 0.21 H281DRAFT_00811 L-threonine synthase 0.60 H281DRAFT_06073 3-isopropylmalate dehydratase, small subunit
Ralstonia solanacearum GMI1000 0.20 RS_RS06660 threonine synthase 0.58 RS_RS09995 3-isopropylmalate dehydratase small subunit
Burkholderia phytofirmans PsJN 0.20 BPHYT_RS08960 threonine synthase 0.59 BPHYT_RS33905 3-isopropylmalate dehydratase small subunit low > 109
Ralstonia solanacearum IBSBF1503 0.20 RALBFv3_RS15880 threonine synthase 0.58 RALBFv3_RS02615 3-isopropylmalate dehydratase small subunit
Ralstonia solanacearum UW163 0.20 UW163_RS13325 threonine synthase 0.58 UW163_RS11110 3-isopropylmalate dehydratase small subunit
Ralstonia solanacearum PSI07 0.19 RPSI07_RS17485 threonine synthase 0.60 RPSI07_RS14700 3-isopropylmalate dehydratase small subunit

Not shown: 0 genomes with orthologs for HER17_RS02805 only; 5 genomes with orthologs for HER17_RS03070 only