Conservation of cofitness between Ga0059261_2216 and Ga0059261_0807 in Sphingomonas koreensis DSMZ 15582

96 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Sphingomonas koreensis DSMZ 15582 1.0 Ga0059261_2216 pyridoxal phosphate enzyme, YggS family 1.0 Ga0059261_0807 RNA methyltransferase, RsmE family 0.35 6
Bosea sp. OAE506 0.51 ABIE41_RS04720 YggS family pyridoxal phosphate-dependent enzyme 0.38 ABIE41_RS23100 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 77
Dinoroseobacter shibae DFL-12 0.51 Dshi_0042 alanine racemase domain protein (RefSeq) 0.42 Dshi_3099 protein of unknown function DUF558 (RefSeq) low > 64
Rhodopseudomonas palustris CGA009 0.51 TX73_001485 YggS family pyridoxal phosphate-dependent enzyme 0.35 TX73_005910 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 86
Azospirillum brasilense Sp245 0.50 AZOBR_RS01870 alanine racemase 0.44 AZOBR_RS11890 16S rRNA methyltransferase
Agrobacterium fabrum C58 0.49 Atu2747 hypothetical protein 0.35 Atu0657 hypothetical protein low > 89
Azospirillum sp. SherDot2 0.49 MPMX19_00050 Pyridoxal phosphate homeostasis protein 0.45 MPMX19_00577 Ribosomal RNA small subunit methyltransferase E low > 112
Rhizobium sp. OAE497 0.48 ABIE40_RS19180 YggS family pyridoxal phosphate-dependent enzyme 0.33 ABIE40_RS03520 16S rRNA (uracil(1498)-N(3))-methyltransferase
Magnetospirillum magneticum AMB-1 0.48 AMB_RS00120 YggS family pyridoxal phosphate-dependent enzyme 0.39 AMB_RS01240 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 64
Sinorhizobium meliloti 1021 0.48 SMc02812 hypothetical protein 0.32 SMc00826 16S ribosomal RNA methyltransferase RsmE low > 103
Brevundimonas sp. GW460-12-10-14-LB2 0.45 A4249_RS13760 YggS family pyridoxal phosphate-dependent enzyme 0.37 A4249_RS00350 16S rRNA (uracil(1498)-N(3))-methyltransferase
Ralstonia solanacearum PSI07 0.45 RPSI07_RS02580 YggS family pyridoxal phosphate-dependent enzyme 0.16 RPSI07_RS11365 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 81
Rhodospirillum rubrum S1H 0.45 Rru_A3634 Protein of unknown function UPF0001 (NCBI) 0.30 Rru_A0571 hypothetical protein (NCBI) low > 58
Ralstonia solanacearum IBSBF1503 0.45 RALBFv3_RS20285 YggS family pyridoxal phosphate-dependent enzyme 0.16 RALBFv3_RS05880 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 76
Ralstonia solanacearum UW163 0.45 UW163_RS18890 YggS family pyridoxal phosphate-dependent enzyme 0.16 UW163_RS07745 16S rRNA (uracil(1498)-N(3))-methyltransferase
Ralstonia solanacearum GMI1000 0.44 RS_RS20395 YggS family pyridoxal phosphate-dependent enzyme 0.17 RS_RS13825 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 80
Phaeobacter inhibens DSM 17395 0.42 PGA1_c33360 putative alanine racemase 0.42 PGA1_c02950 RNA methyltransferase-like protein low > 62
Caulobacter crescentus NA1000 0.41 CCNA_03861 pyridoxal 5'-phosphate dependent enzyme class III 0.39 CCNA_03528 RNA methyltransferase low > 66
Caulobacter crescentus NA1000 Δfur 0.41 CCNA_03861 pyridoxal 5'-phosphate dependent enzyme class III 0.39 CCNA_03528 RNA methyltransferase low > 67
Dickeya dianthicola ME23 0.38 DZA65_RS03335 YggS family pyridoxal phosphate-dependent enzyme 0.17 DZA65_RS19625 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 75
Enterobacter asburiae PDN3 0.33 EX28DRAFT_2989 pyridoxal phosphate enzyme, YggS family 0.17 EX28DRAFT_2984 RNA methyltransferase, RsmE family low > 76
Escherichia fergusonii Becca 0.32 EFB2_00951 Pyridoxal phosphate homeostasis protein 0.17 EFB2_00956 Ribosomal RNA small subunit methyltransferase E low > 86
Escherichia coli ECRC100 0.32 OKFHMN_19255 yggS pyridoxal phosphate homeostasis protein 0.17 OKFHMN_19280 rsmE 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 80
Escherichia coli BW25113 0.32 b2951 yggS predicted enzyme (NCBI) 0.17 b2946 yggJ orf, hypothetical protein (VIMSS) low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.32 OHPLBJKB_00765 Pyridoxal phosphate homeostasis protein 0.17 OHPLBJKB_00772 Ribosomal RNA small subunit methyltransferase E low > 73
Escherichia coli ECOR27 0.32 NOLOHH_11125 yggS pyridoxal phosphate homeostasis protein 0.17 NOLOHH_11150 rsmE 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 75
Escherichia coli ECRC102 0.32 NIAGMN_17020 yggS pyridoxal phosphate homeostasis protein 0.17 NIAGMN_17045 rsmE 16S rRNA (uracil(1498)-N(3))-methyltransferase
Escherichia coli ECRC62 0.32 BNILDI_09705 yggS pyridoxal phosphate homeostasis protein 0.17 BNILDI_09730 rsmE 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 75
Escherichia coli BL21 0.32 ECD_02781 UPF0001 family protein, PLP-binding 0.17 ECD_02776 16S rRNA m(3)U1498 methyltransferase, SAM-dependent low > 61
Escherichia coli ECRC98 0.32 JDDGAC_22885 yggS pyridoxal phosphate homeostasis protein 0.17 JDDGAC_22910 rsmE 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 86
Escherichia coli ECOR38 0.32 HEPCGN_18560 yggS pyridoxal phosphate homeostasis protein 0.17 HEPCGN_18585 Ribosomal RNA small subunit methyltransferase E low > 87
Escherichia coli ECRC101 0.32 MCAODC_09775 yggS pyridoxal phosphate homeostasis protein 0.17 MCAODC_09800 rsmE 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 87
Escherichia coli Nissle 1917 0.32 ECOLIN_RS16415 pyridoxal phosphate homeostasis protein 0.17 ECOLIN_RS16390 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 55
Escherichia coli ECRC99 0.31 KEDOAH_08885 yggS pyridoxal phosphate homeostasis protein 0.17 KEDOAH_08860 rsmE 16S rRNA (uracil(1498)-N(3))-methyltransferase
Lysobacter sp. OAE881 0.31 ABIE51_RS16060 YggS family pyridoxal phosphate-dependent enzyme 0.16 ABIE51_RS05260 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 62
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.31 GFF3054 Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC 0.17 GFF3048 Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) low > 78
Klebsiella michiganensis M5al 0.30 BWI76_RS24100 YggS family pyridoxal phosphate enzyme 0.18 BWI76_RS24070 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 92
Shewanella loihica PV-4 0.30 Shew_1137 alanine racemase domain-containing protein (RefSeq) 0.17 Shew_3224 hypothetical protein (RefSeq) low > 60
Xanthomonas campestris pv. campestris strain 8004 0.29 Xcc-8004.1711.1 Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC 0.15 Xcc-8004.1558.1 Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-)
Shewanella amazonensis SB2B 0.29 Sama_2477 hypothetical protein (RefSeq) 0.16 Sama_0575 16S ribosomal RNA methyltransferase RsmE (RefSeq) low > 62
Pseudomonas syringae pv. syringae B728a ΔmexB 0.29 Psyr_0477 Protein of unknown function UPF0001 0.22 Psyr_0453 16S rRNA m(3)U-1498 methyltransferase low > 86
Enterobacter sp. TBS_079 0.29 MPMX20_03809 Pyridoxal phosphate homeostasis protein 0.17 MPMX20_03804 Ribosomal RNA small subunit methyltransferase E low > 85
Pseudomonas syringae pv. syringae B728a 0.29 Psyr_0477 Protein of unknown function UPF0001 0.22 Psyr_0453 16S rRNA m(3)U-1498 methyltransferase low > 86
Shewanella sp. ANA-3 0.29 Shewana3_1194 hypothetical protein (RefSeq) 0.17 Shewana3_3444 16S ribosomal RNA methyltransferase RsmE (RefSeq) low > 73
Shewanella oneidensis MR-1 0.29 SO3352 conserved hypothetical protein TIGR00044 (NCBI ptt file) 0.17 SO0832 conserved hypothetical protein TIGR00046 (NCBI ptt file) low > 76
Burkholderia phytofirmans PsJN 0.29 BPHYT_RS03495 hypothetical protein 0.19 BPHYT_RS16855 16S rRNA methyltransferase low > 109
Pectobacterium carotovorum WPP14 0.29 HER17_RS03810 YggS family pyridoxal phosphate-dependent enzyme 0.14 HER17_RS02640 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 75
Alteromonas macleodii MIT1002 0.28 MIT1002_03061 pyridoxal phosphate enzyme, YggS family 0.21 MIT1002_03054 Ribosomal RNA small subunit methyltransferase E low > 70
Marinobacter adhaerens HP15 0.28 HP15_288 alanine racemase domain protein 0.19 HP15_2926 ribosomal RNA small subunit methyltransferase E low > 73
Paraburkholderia bryophila 376MFSha3.1 0.28 H281DRAFT_04680 hypothetical protein 0.22 H281DRAFT_06311 16S rRNA (uracil1498-N3)-methyltransferase low > 103
Synechococcus elongatus PCC 7942 0.28 Synpcc7942_2060 ylmE hypothetical protein 0.17 Synpcc7942_0806 hypothetical protein low > 38
Pseudomonas sp. S08-1 0.28 OH686_10975 Pyridoxal phosphate-containing protein YggS 0.23 OH686_10855 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 80
Ralstonia sp. UNC404CL21Col 0.28 ABZR87_RS01225 YggS family pyridoxal phosphate-dependent enzyme 0.17 ABZR87_RS01505 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 80
Erwinia tracheiphila SCR3 0.28 LU632_RS05460 YggS family pyridoxal phosphate-dependent enzyme 0.18 LU632_RS05485 rsmE 16S rRNA (uracil(1498)-N(3))-methyltransferase 0.69 15
Rahnella sp. WP5 0.28 EX31_RS02685 YggS family pyridoxal phosphate-dependent enzyme 0.18 EX31_RS02660 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 89
Acidovorax sp. GW101-3H11 0.28 Ac3H11_4474 Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC 0.17 Ac3H11_4323 Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) low > 79
Pantoea sp. MT58 0.28 IAI47_03595 YggS family pyridoxal phosphate-dependent enzyme 0.18 IAI47_03620 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 76
Rhodanobacter denitrificans FW104-10B01 0.28 LRK54_RS02905 YggS family pyridoxal phosphate-dependent enzyme 0.19 LRK54_RS04160 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 59
Hydrogenophaga sp. GW460-11-11-14-LB1 0.27 GFF2722 Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC 0.16 GFF2462 Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) low > 90
Rhodanobacter denitrificans MT42 0.27 LRK55_RS02655 YggS family pyridoxal phosphate-dependent enzyme 0.19 LRK55_RS03930 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 63
Pseudomonas putida KT2440 0.27 PP_5094 putative enzyme with PLP binding domain 0.22 PP_4985 16S rRNA m3U1498 methyltransferase low > 96
Variovorax sp. SCN45 0.27 GFF3744 Pyridoxal phosphate-containing protein YggS 0.17 GFF3255 16S rRNA (uracil(1498)-N(3))-methyltransferase (EC 2.1.1.193)
Paraburkholderia sabiae LMG 24235 0.27 QEN71_RS26595 YggS family pyridoxal phosphate-dependent enzyme 0.18 QEN71_RS27020 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 153
Dyella japonica UNC79MFTsu3.2 0.27 ABZR86_RS09305 YggS family pyridoxal phosphate-dependent enzyme 0.19 ABZR86_RS10230 16S rRNA (uracil(1498)-N(3))-methyltransferase
Dickeya dianthicola 67-19 0.27 HGI48_RS17345 YggS family pyridoxal phosphate-dependent enzyme 0.17 HGI48_RS18490 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 71
Paraburkholderia graminis OAS925 0.27 ABIE53_000841 pyridoxal phosphate enzyme (YggS family) 0.21 ABIE53_003540 16S rRNA (uracil1498-N3)-methyltransferase low > 113
Kangiella aquimarina DSM 16071 0.27 B158DRAFT_0196 pyridoxal phosphate enzyme, YggS family 0.20 B158DRAFT_0180 RNA methyltransferase, RsmE family low > 40
Dechlorosoma suillum PS 0.26 Dsui_0603 pyridoxal phosphate enzyme, YggS family 0.19 Dsui_1568 RNA methyltransferase, RsmE family
Dickeya dadantii 3937 0.26 DDA3937_RS17300 YggS family pyridoxal phosphate-dependent enzyme 0.18 DDA3937_RS18555 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 74
Serratia liquefaciens MT49 0.26 IAI46_21410 YggS family pyridoxal phosphate-dependent enzyme 0.18 IAI46_21385 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 86
Mucilaginibacter yixingensis YX-36 DSM 26809 0.26 ABZR88_RS11740 YggS family pyridoxal phosphate-dependent enzyme 0.14 ABZR88_RS17085 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 71
Acinetobacter radioresistens SK82 0.26 MPMX26_02404 Pyridoxal phosphate homeostasis protein 0.19 MPMX26_01001 Ribosomal RNA small subunit methyltransferase E low > 36
Pseudomonas fluorescens FW300-N2C3 0.26 AO356_13425 hypothetical protein 0.22 AO356_13565 16S rRNA methyltransferase low > 104
Pseudomonas fluorescens FW300-N1B4 0.26 Pf1N1B4_2342 Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC 0.23 Pf1N1B4_2376 Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-)
Pseudomonas simiae WCS417 0.26 PS417_26725 hypothetical protein 0.22 PS417_26545 16S rRNA methyltransferase low > 88
Pseudomonas stutzeri RCH2 0.26 Psest_0284 pyridoxal phosphate enzyme, YggS family 0.23 Psest_0305 RNA methyltransferase, RsmE family low > 67
Pseudomonas sp. RS175 0.26 PFR28_04242 Pyridoxal phosphate homeostasis protein 0.22 PFR28_04209 Ribosomal RNA small subunit methyltransferase E low > 88
Pseudomonas fluorescens SBW25-INTG 0.26 PFLU_RS28370 YggS family pyridoxal phosphate-dependent enzyme 0.22 PFLU_RS28200 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 109
Herbaspirillum seropedicae SmR1 0.26 HSERO_RS18995 hypothetical protein 0.18 HSERO_RS07110 16S rRNA methyltransferase low > 78
Pseudomonas fluorescens GW456-L13 0.26 PfGW456L13_1011 Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC 0.22 PfGW456L13_1043 Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) low > 87
Pseudomonas fluorescens SBW25 0.26 PFLU_RS28370 YggS family pyridoxal phosphate-dependent enzyme 0.22 PFLU_RS28200 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 109
Bacteroides thetaiotaomicron VPI-5482 0.25 BT1332 conserved hypothetical protein (NCBI ptt file) 0.12 BT4328 conserved hypothetical protein (NCBI ptt file) low > 81
Rhodanobacter sp. FW510-T8 0.25 OKGIIK_09885 Pyridoxal phosphate homeostasis protein 0.19 OKGIIK_11035 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 52
Bacteroides ovatus ATCC 8483 0.25 BACOVA_00593 pyridoxal phosphate enzyme, YggS family 0.13 BACOVA_05130 RNA methyltransferase, RsmE family low > 94
Parabacteroides merdae CL09T00C40 0.25 HMPREF1078_RS15965 YggS family pyridoxal phosphate-dependent enzyme 0.14 HMPREF1078_RS10135 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 61
Pseudomonas fluorescens FW300-N2E2 0.25 Pf6N2E2_4601 Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC 0.23 Pf6N2E2_4630 Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) low > 103
Pseudomonas fluorescens FW300-N2E3 0.25 AO353_10505 hypothetical protein 0.22 AO353_08050 16S rRNA methyltransferase low > 101
Bacteroides stercoris CC31F 0.24 HMPREF1181_RS10865 YggS family pyridoxal phosphate-dependent enzyme 0.11 HMPREF1181_RS05940 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 56
Vibrio cholerae E7946 ATCC 55056 0.24 CSW01_02455 YggS family pyridoxal phosphate enzyme 0.18 CSW01_02495 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 62
Fusobacterium nucleatum SB010 0.24 HUW76_07280 YggS family pyridoxal phosphate-dependent enzyme 0.15 HUW76_04180 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 35
Echinicola vietnamensis KMM 6221, DSM 17526 0.24 Echvi_2233 pyridoxal phosphate enzyme, YggS family 0.16 Echvi_3055 RNA methyltransferase, RsmE family low > 79
Cupriavidus basilensis FW507-4G11 0.24 RR42_RS17355 hypothetical protein 0.17 RR42_RS17590 16S rRNA methyltransferase low > 128
Castellaniella sp019104865 MT123 0.24 ABCV34_RS02955 YggS family pyridoxal phosphate-dependent enzyme 0.16 ABCV34_RS15445 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 48
Pedobacter sp. GW460-11-11-14-LB5 0.23 CA265_RS06285 YggS family pyridoxal phosphate enzyme 0.16 CA265_RS23620 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 88
Pontibacter actiniarum KMM 6156, DSM 19842 0.23 CA264_06410 YggS family pyridoxal phosphate enzyme 0.16 CA264_05265 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 74
Phocaeicola dorei CL03T12C01 0.22 ABI39_RS20000 YggS family pyridoxal phosphate-dependent enzyme 0.13 ABI39_RS18150 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 72
Phocaeicola vulgatus CL09T03C04 0.22 HMPREF1058_RS06240 YggS family pyridoxal phosphate-dependent enzyme 0.13 HMPREF1058_RS05940 16S rRNA (uracil(1498)-N(3))-methyltransferase low > 67

Not shown: 5 genomes with orthologs for Ga0059261_2216 only; 0 genomes with orthologs for Ga0059261_0807 only