Conservation of cofitness between PS417_25395 and PS417_27865 in Pseudomonas simiae WCS417

108 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas simiae WCS417 1.0 PS417_25395 excinuclease ABC subunit A 1.0 PS417_27865 LysR family transcriptional regulator 0.31 19
Pseudomonas fluorescens SBW25-INTG 1.00 PFLU_RS27025 excinuclease ABC subunit UvrA 0.98 PFLU_RS29545 hydrogen peroxide-inducible genes activator 0.25 109
Pseudomonas fluorescens SBW25 1.00 PFLU_RS27025 excinuclease ABC subunit UvrA 0.98 PFLU_RS29545 hydrogen peroxide-inducible genes activator low > 109
Pseudomonas lactucae CFBP13502 0.99 GEMAOFIL_05194 UvrABC system protein A 0.94 GEMAOFIL_00041 Hydrogen peroxide-inducible genes activator low > 93
Pseudomonas fluorescens FW300-N1B4 0.98 Pf1N1B4_2611 Excinuclease ABC subunit A 0.92 Pf1N1B4_2106 Hydrogen peroxide-inducible genes activator 0.35 30
Pseudomonas fluorescens GW456-L13 0.98 PfGW456L13_1283 Excinuclease ABC subunit A 0.93 PfGW456L13_773 Hydrogen peroxide-inducible genes activator 0.45 6
Pseudomonas fluorescens FW300-N2E3 0.98 AO353_06855 ABC-ATPase UvrA 0.92 AO353_09315 LysR family transcriptional regulator low > 101
Pseudomonas fluorescens FW300-N2C3 0.97 AO356_14785 ABC-ATPase UvrA 0.93 AO356_12385 LysR family transcriptional regulator low > 104
Pseudomonas fluorescens FW300-N2E2 0.97 Pf6N2E2_4888 Excinuclease ABC subunit A 0.96 Pf6N2E2_4353 Hydrogen peroxide-inducible genes activator 0.30 41
Pseudomonas sp. RS175 0.97 PFR28_03974 UvrABC system protein A 0.92 PFR28_04434 Hydrogen peroxide-inducible genes activator low > 88
Pseudomonas sp. DMC3 0.97 GFF3792 UvrABC system protein A 0.93 GFF426 Hydrogen peroxide-inducible genes activator low > 89
Pseudomonas syringae pv. syringae B728a ΔmexB 0.95 Psyr_4520 Excinuclease ABC subunit A 0.96 Psyr_0202 transcriptional regulator, LysR family low > 86
Pseudomonas syringae pv. syringae B728a 0.95 Psyr_4520 Excinuclease ABC subunit A 0.96 Psyr_0202 transcriptional regulator, LysR family low > 86
Pseudomonas sp. SVBP6 0.95 COO64_RS16075 uvrA excinuclease ABC subunit UvrA 0.92 COO64_RS01590 hydrogen peroxide-inducible genes activator low > 93
Pseudomonas putida KT2440 0.93 PP_0483 excinuclease (uvrABC system protein A) 0.93 PP_5309 oxidative and nitrosative stress transcriptional dual regulator
Pseudomonas sp. BP01 0.93 JOY50_RS20305 uvrA excinuclease ABC subunit UvrA 0.93 JOY50_RS08950 hydrogen peroxide-inducible genes activator low > 84
Pseudomonas sp. S08-1 0.92 OH686_15495 excinuclease ABC subunit A 0.86 OH686_13510 Hydrogen peroxide-inducible genes activator low > 80
Pseudomonas aeruginosa PA14 0.91 IKLFDK_21795 excinuclease ABC subunit UvrA 0.87 IKLFDK_26735 oxidative stress transcriptional regulator OxyR 0.40 52
Pseudomonas stutzeri RCH2 0.90 Psest_3576 excinuclease ABC, A subunit 0.91 Psest_4191 Transcriptional regulator low > 67
Escherichia coli ECRC98 0.77 JDDGAC_16530 uvrA excinuclease ABC subunit UvrA 0.37 JDDGAC_17190 oxyR DNA-binding transcriptional regulator OxyR low > 87
Escherichia coli ECRC101 0.77 MCAODC_03405 uvrA excinuclease ABC subunit UvrA 0.37 MCAODC_04065 oxyR DNA-binding transcriptional regulator OxyR low > 88
Escherichia fergusonii Becca 0.77 EFB2_04533 UvrABC system protein A 0.37 EFB2_04651 Hydrogen peroxide-inducible genes activator low > 86
Escherichia coli ECRC102 0.77 NIAGMN_10740 uvrA excinuclease ABC subunit UvrA 0.37 NIAGMN_11315 oxyR DNA-binding transcriptional regulator OxyR low > 80
Escherichia coli ECRC99 0.77 KEDOAH_15255 uvrA excinuclease ABC subunit UvrA 0.37 KEDOAH_14595 oxyR DNA-binding transcriptional regulator OxyR
Escherichia coli ECOR38 0.77 HEPCGN_11510 uvrA excinuclease ABC subunit UvrA 0.37 HEPCGN_12210 oxyR DNA-binding transcriptional regulator OxyR low > 88
Escherichia coli Nissle 1917 0.77 ECOLIN_RS23485 excinuclease ABC subunit UvrA 0.37 ECOLIN_RS22870 DNA-binding transcriptional regulator OxyR low > 55
Escherichia coli ECRC100 0.77 OKFHMN_12895 uvrA excinuclease ABC subunit UvrA 0.37 OKFHMN_13565 oxyR DNA-binding transcriptional regulator OxyR low > 79
Escherichia coli HS(pFamp)R (ATCC 700891) 0.77 OHPLBJKB_03983 UvrABC system protein A 0.37 OHPLBJKB_04089 Hydrogen peroxide-inducible genes activator low > 74
Escherichia coli ECOR27 0.77 NOLOHH_05145 uvrA excinuclease ABC subunit UvrA 0.37 NOLOHH_05700 oxyR DNA-binding transcriptional regulator OxyR low > 76
Escherichia coli BW25113 0.77 b4058 uvrA excinuclease ABC subunit A (NCBI) 0.37 b3961 oxyR DNA-binding transcriptional dual regulator (NCBI) 0.19 57
Escherichia coli ECRC62 0.77 BNILDI_06380 uvrA excinuclease ABC subunit UvrA 0.37 BNILDI_05825 oxyR DNA-binding transcriptional regulator OxyR low > 75
Escherichia coli BL21 0.77 ECD_03930 ATPase and DNA damage recognition protein of nucleotide excision repair excinuclease UvrABC 0.37 ECD_03846 oxidative and nitrosative stress transcriptional regulator 0.68 15
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.77 GFF1429 Excinuclease ABC subunit A 0.36 GFF2347 Hydrogen peroxide-inducible genes activator low > 78
Dickeya dadantii 3937 0.77 DDA3937_RS17605 excinuclease ABC subunit UvrA 0.37 DDA3937_RS00970 DNA-binding transcriptional regulator OxyR low > 74
Klebsiella pneumoniae MKP103 0.77 KDGMDA_10400 excinuclease ABC subunit UvrA 0.37 KDGMDA_09380 DNA-binding transcriptional regulator OxyR low > 95
Rahnella sp. WP5 0.77 EX31_RS11990 excinuclease ABC subunit UvrA 0.36 EX31_RS14170 DNA-binding transcriptional regulator OxyR low > 89
Dickeya dianthicola 67-19 0.77 HGI48_RS17610 excinuclease ABC subunit UvrA 0.37 HGI48_RS20405 DNA-binding transcriptional regulator OxyR low > 71
Dickeya dianthicola ME23 0.77 DZA65_RS18735 excinuclease ABC subunit UvrA 0.37 DZA65_RS21450 DNA-binding transcriptional regulator OxyR low > 75
Marinobacter adhaerens HP15 0.77 HP15_406 excinuclease ABC, ATPase subunit (A) 0.65 HP15_308 oxidative stress regulatory protein OxyR 0.38 46
Enterobacter sp. TBS_079 0.76 MPMX20_00276 UvrABC system protein A 0.37 MPMX20_04519 Hydrogen peroxide-inducible genes activator low > 85
Klebsiella michiganensis M5al 0.76 BWI76_RS01950 excinuclease ABC subunit A 0.36 BWI76_RS00865 DNA-binding transcriptional regulator OxyR low > 92
Kangiella aquimarina DSM 16071 0.76 B158DRAFT_0885 excinuclease ABC, A subunit 0.55 B158DRAFT_0567 Transcriptional regulator 0.65 9
Pectobacterium carotovorum WPP14 0.76 HER17_RS03550 excinuclease ABC subunit UvrA 0.37 HER17_RS00955 DNA-binding transcriptional regulator OxyR low > 75
Enterobacter asburiae PDN3 0.76 EX28DRAFT_4246 excinuclease ABC, A subunit 0.37 EX28DRAFT_4424 Transcriptional regulator
Pantoea agglomerans CFBP13505 P0401 0.76 PagCFBP13505_RS21140 excinuclease ABC subunit UvrA 0.36 PagCFBP13505_RS18410 DNA-binding transcriptional regulator OxyR low > 74
Alteromonas macleodii MIT1002 0.76 MIT1002_00179 Excinuclease ABC subunit A 0.24 MIT1002_01120 Morphology and auto-aggregation control protein low > 70
Serratia liquefaciens MT49 0.76 IAI46_22905 excinuclease ABC subunit UvrA 0.36 IAI46_24475 DNA-binding transcriptional regulator OxyR 0.49 15
Vibrio cholerae E7946 ATCC 55056 0.76 CSW01_02080 UvrABC system protein A 0.34 CSW01_13340 DNA-binding transcriptional regulator OxyR low > 62
Pantoea sp. MT58 0.76 IAI47_17815 excinuclease ABC subunit UvrA 0.36 IAI47_00930 DNA-binding transcriptional regulator OxyR low > 76
Shewanella oneidensis MR-1 0.75 SO4030 uvrA excinuclease ABC, A subunit (NCBI ptt file) 0.26 SO1328 transcriptional regulator, LysR family (NCBI ptt file) low > 76
Erwinia amylovora T8 0.75 OLJFJH_03425 excinuclease ABC subunit UvrA 0.36 OLJFJH_06140 DNA-binding transcriptional regulator OxyR low > 58
Shewanella amazonensis SB2B 0.75 Sama_0514 excinuclease ABC, A subunit (RefSeq) 0.24 Sama_0860 LysR family transcriptional regulator (RefSeq) low > 62
Shewanella sp. ANA-3 0.75 Shewana3_3592 excinuclease ABC subunit A (RefSeq) 0.26 Shewana3_3046 LysR family transcriptional regulator (RefSeq) 0.41 31
Erwinia tracheiphila SCR3 0.75 LU632_RS23685 uvrA excinuclease ABC subunit UvrA 0.36 LU632_RS19590 oxyR DNA-binding transcriptional regulator OxyR low > 74
Erwinia tracheiphila HP pepo 2.2 0.75 IJEDHG_11155 uvrA excinuclease ABC subunit UvrA 0.36 IJEDHG_13070 oxyR DNA-binding transcriptional regulator OxyR
Shewanella loihica PV-4 0.75 Shew_0533 excinuclease ABC, A subunit (RefSeq) 0.24 Shew_1035 LysR family transcriptional regulator (RefSeq) low > 60
Dechlorosoma suillum PS 0.74 Dsui_1622 excinuclease ABC, A subunit 0.56 Dsui_0823 transcriptional regulator low > 51
Dyella japonica UNC79MFTsu3.2 0.72 ABZR86_RS00910 excinuclease ABC subunit UvrA 0.29 ABZR86_RS19355 DNA-binding transcriptional regulator OxyR low > 74
Xanthomonas campestris pv. campestris strain 8004 0.72 Xcc-8004.3830.1 Excinuclease ABC subunit A 0.31 Xcc-8004.4224.1 Hydrogen peroxide-inducible genes activator low > 74
Methylophilus sp. DMC18 0.71 GFF2008 UvrABC system protein A 0.48 GFF2032 Hydrogen peroxide-inducible genes activator low > 43
Rhodanobacter sp000427505 FW510-R12 0.71 LRK53_RS13420 excinuclease ABC subunit UvrA 0.32 LRK53_RS05255 LysR substrate-binding domain-containing protein low > 59
Rhodanobacter denitrificans FW104-10B01 0.71 LRK54_RS15210 excinuclease ABC subunit UvrA 0.31 LRK54_RS04765 LysR substrate-binding domain-containing protein low > 59
Rhodanobacter denitrificans MT42 0.71 LRK55_RS14925 excinuclease ABC subunit UvrA 0.31 LRK55_RS04545 LysR substrate-binding domain-containing protein low > 63
Rhodanobacter sp. FW510-T8 0.71 OKGIIK_03980 uvrA excinuclease ABC subunit UvrA 0.32 OKGIIK_01995 lysR DNA-binding transcriptional regulator OxyR low > 52
Ralstonia sp. UNC404CL21Col 0.70 ABZR87_RS07120 excinuclease ABC subunit UvrA 0.51 ABZR87_RS01255 LysR substrate-binding domain-containing protein 0.51 73
Herbaspirillum seropedicae SmR1 0.70 HSERO_RS19810 excinuclease ABC subunit A 0.52 HSERO_RS18935 LysR family transcriptional regulator low > 78
Ralstonia solanacearum PSI07 0.70 RPSI07_RS22065 excinuclease ABC subunit UvrA 0.52 RPSI07_RS11690 hydrogen peroxide-inducible genes activator low > 81
Ralstonia solanacearum GMI1000 0.70 RS_RS02080 excinuclease ABC subunit UvrA 0.52 RS_RS13470 hydrogen peroxide-inducible genes activator 0.54 31
Ralstonia solanacearum IBSBF1503 0.70 RALBFv3_RS11235 excinuclease ABC subunit UvrA 0.52 RALBFv3_RS05605 hydrogen peroxide-inducible genes activator low > 76
Ralstonia solanacearum UW163 0.70 UW163_RS02345 excinuclease ABC subunit UvrA 0.52 UW163_RS08020 hydrogen peroxide-inducible genes activator
Acinetobacter baumannii LAC-4 0.69 RR41_RS01040 excinuclease ABC subunit UvrA 0.27 RR41_RS08890 hydrogen peroxide-inducible genes activator low > 55
Cupriavidus basilensis FW507-4G11 0.69 RR42_RS02145 excinuclease ABC subunit A 0.49 RR42_RS17385 LysR family transcriptional regulator 0.37 22
Paraburkholderia sabiae LMG 24235 0.69 QEN71_RS01825 excinuclease ABC subunit UvrA 0.51 QEN71_RS26625 LysR substrate-binding domain-containing protein low > 153
Burkholderia phytofirmans PsJN 0.69 BPHYT_RS02970 excinuclease ABC subunit A 0.51 BPHYT_RS03470 LysR family transcriptional regulator low > 109
Paraburkholderia graminis OAS925 0.69 ABIE53_000732 excinuclease ABC subunit A 0.51 ABIE53_000834 LysR family hydrogen peroxide-inducible transcriptional activator low > 113
Acinetobacter radioresistens SK82 0.69 MPMX26_02892 UvrABC system protein A 0.26 MPMX26_02334 Hydrogen peroxide-inducible genes activator low > 36
Paraburkholderia bryophila 376MFSha3.1 0.69 H281DRAFT_01913 Excinuclease ABC subunit A 0.52 H281DRAFT_04673 transcriptional regulator, LysR family low > 103
Variovorax sp. SCN45 0.66 GFF4944 Excinuclease ABC subunit A 0.47 GFF5549 Hydrogen peroxide-inducible genes activator => OxyR low > 127
Hydrogenophaga sp. GW460-11-11-14-LB1 0.66 GFF2755 Excinuclease ABC subunit A 0.44 GFF2803 Hydrogen peroxide-inducible genes activator low > 90
Variovorax sp. OAS795 0.66 ABID97_RS04340 excinuclease ABC subunit UvrA 0.47 ABID97_RS01570 LysR substrate-binding domain-containing protein low > 91
Acidovorax sp. GW101-3H11 0.65 Ac3H11_4387 Excinuclease ABC subunit A 0.47 Ac3H11_784 Hydrogen peroxide-inducible genes activator 0.34 52
Xanthobacter sp. DMC5 0.62 GFF749 UvrABC system protein A 0.30 GFF668 Hydrogen peroxide-inducible genes activator
Castellaniella sp019104865 MT123 0.62 ABCV34_RS12715 excinuclease ABC subunit UvrA 0.53 ABCV34_RS03575 LysR substrate-binding domain-containing protein low > 48
Rhodospirillum rubrum S1H 0.62 Rru_A1752 Excinuclease ABC, A subunit (NCBI) 0.32 Rru_A0334 Transcriptional Regulator, LysR family (NCBI) low > 58
Brevundimonas sp. GW460-12-10-14-LB2 0.62 A4249_RS08575 excinuclease ABC subunit UvrA 0.24 A4249_RS12755 hydrogen peroxide-inducible genes activator low > 48
Sphingobium sp. HT1-2 0.61 GFF1696 Excinuclease ABC subunit A 0.28 GFF1271 Hydrogen peroxide-inducible genes activator => OxyR low > 95
Rhodopseudomonas palustris CGA009 0.61 TX73_014580 excinuclease ABC subunit UvrA 0.25 TX73_002235 LysR substrate-binding domain-containing protein low > 86
Dinoroseobacter shibae DFL-12 0.61 Dshi_1809 excinuclease ABC, A subunit (RefSeq) 0.28 Dshi_0727 transcriptional regulator, LysR family (RefSeq) low > 64
Azospirillum sp. SherDot2 0.61 MPMX19_01152 UvrABC system protein A 0.37 MPMX19_04930 Hydrogen peroxide-inducible genes activator low > 112
Caulobacter crescentus NA1000 0.60 CCNA_02673 excinuclease ABC subunit A 0.31 CCNA_03811 LysR-family transcriptional regulator low > 66
Caulobacter crescentus NA1000 Δfur 0.60 CCNA_02673 excinuclease ABC subunit A 0.31 CCNA_03811 LysR-family transcriptional regulator
Sphingomonas koreensis DSMZ 15582 0.60 Ga0059261_0674 excinuclease ABC, A subunit 0.31 Ga0059261_0159 Transcriptional regulator 0.22 50
Magnetospirillum magneticum AMB-1 0.60 AMB_RS12410 excinuclease ABC subunit UvrA 0.32 AMB_RS03045 hydrogen peroxide-inducible genes activator 0.84 11
Azospirillum brasilense Sp245 0.60 AZOBR_RS15370 excinuclease ABC subunit A 0.37 AZOBR_RS31340 LysR family transcriptional regulator low > 97
Agrobacterium fabrum C58 0.60 Atu1513 ABC excinuclease subunit A 0.29 Atu4641 LysR family transcriptional regulator low > 89
Rhizobium sp. OAE497 0.60 ABIE40_RS09360 excinuclease ABC subunit UvrA 0.24 ABIE40_RS15045 hydrogen peroxide-inducible genes activator low > 107
Sinorhizobium meliloti 1021 0.59 SMc01235 excinuclease ABC subunit A 0.29 SMc00818 hydrogen peroxide-inducible genes activator (morphology and AUTO-aggregation control protein) low > 103
Bosea sp. OAE506 0.59 ABIE41_RS15100 excinuclease ABC subunit UvrA 0.28 ABIE41_RS01195 hydrogen peroxide-inducible genes activator low > 77
Phaeobacter inhibens DSM 17395 0.58 PGA1_c17370 uvrABC system protein A 0.30 PGA1_78p00040 hydrogen peroxide-inducible genes activator OxyR
Echinicola vietnamensis KMM 6221, DSM 17526 0.51 Echvi_1138 excinuclease ABC, A subunit 0.29 Echvi_1045 Transcriptional regulator 0.38 50
Bacteroides ovatus ATCC 8483 0.51 BACOVA_03703 excinuclease ABC, A subunit 0.28 BACOVA_05567 LysR substrate binding domain protein low > 96
Bacteroides thetaiotaomicron VPI-5482 0.51 BT0578 excinuclease ABC subunit A (NCBI ptt file) 0.29 BT4716 redox-sensitive transcriptional activator (NCBI ptt file) low > 81
Phocaeicola dorei CL03T12C01 0.50 ABI39_RS15330 excinuclease ABC subunit UvrA 0.27 ABI39_RS06075 hydrogen peroxide-inducible genes activator low > 72
Pontibacter actiniarum KMM 6156, DSM 19842 0.50 CA264_18100 ABC-ATPase UvrA 0.30 CA264_13765 DNA-binding transcriptional regulator OxyR low > 74
Parabacteroides merdae CL09T00C40 0.50 HMPREF1078_RS00835 excinuclease ABC subunit UvrA 0.26 HMPREF1078_RS01140 hydrogen peroxide-inducible genes activator low > 61
Cellulophaga baltica 18 0.49 M666_RS15455 excinuclease ABC subunit UvrA 0.27 M666_RS10825 LysR substrate-binding domain-containing protein
Bacteroides stercoris CC31F 0.49 HMPREF1181_RS15185 excinuclease ABC subunit UvrA 0.27 HMPREF1181_RS02160 hydrogen peroxide-inducible genes activator low > 56
Pedobacter sp. GW460-11-11-14-LB5 0.49 CA265_RS25080 excinuclease ABC subunit A 0.28 CA265_RS19680 DNA-binding transcriptional regulator OxyR low > 88
Mucilaginibacter yixingensis YX-36 DSM 26809 0.48 ABZR88_RS18670 excinuclease ABC subunit UvrA 0.28 ABZR88_RS18535 hydrogen peroxide-inducible genes activator 0.77 23

Not shown: 10 genomes with orthologs for PS417_25395 only; 1 genomes with orthologs for PS417_27865 only