Conservation of cofitness between PS417_02485 and PS417_27245 in Pseudomonas simiae WCS417

90 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas simiae WCS417 1.0 PS417_02485 tRNA delta(2)-isopentenylpyrophosphate transferase 1.0 PS417_27245 aminotransferase DegT 0.35 10
Pseudomonas fluorescens SBW25 0.98 PFLU_RS02565 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.98 PFLU_RS28905 DegT/DnrJ/EryC1/StrS aminotransferase family protein low > 109
Pseudomonas fluorescens SBW25-INTG 0.98 PFLU_RS02565 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.98 PFLU_RS28905 DegT/DnrJ/EryC1/StrS aminotransferase family protein 0.28 74
Pseudomonas fluorescens FW300-N2E3 0.89 AO353_13140 tRNA dimethylallyltransferase 0.90 AO353_08725 aminotransferase DegT low > 101
Pseudomonas fluorescens GW456-L13 0.88 PfGW456L13_155 tRNA dimethylallyltransferase (EC 2.5.1.75) 0.24 PfGW456L13_4370 Bacillosamine/Legionaminic acid biosynthesis aminotransferase PglE; 4-keto-6-deoxy-N-Acetyl-D-hexosaminyl-(Lipid carrier) aminotransferase low > 87
Pseudomonas fluorescens FW300-N1B4 0.88 Pf1N1B4_1413 tRNA dimethylallyltransferase (EC 2.5.1.75) 0.25 Pf1N1B4_3586 DegT/DnrJ/EryC1/StrS aminotransferase
Pseudomonas fluorescens FW300-N2E2 0.87 Pf6N2E2_3615 tRNA dimethylallyltransferase (EC 2.5.1.75) 0.24 Pf6N2E2_2610 Bacillosamine/Legionaminic acid biosynthesis aminotransferase PglE; 4-keto-6-deoxy-N-Acetyl-D-hexosaminyl-(Lipid carrier) aminotransferase
Pseudomonas fluorescens FW300-N2C3 0.87 AO356_08660 tRNA dimethylallyltransferase 0.20 AO356_03400 aminotransferase DegT low > 104
Pseudomonas sp. RS175 0.86 PFR28_05120 tRNA dimethylallyltransferase 0.26 PFR28_00919 UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine transaminase
Pseudomonas syringae pv. syringae B728a ΔmexB 0.85 Psyr_0571 tRNA isopentenyltransferase 0.34 Psyr_2689 DegT/DnrJ/EryC1/StrS aminotransferase low > 86
Pseudomonas syringae pv. syringae B728a 0.85 Psyr_0571 tRNA isopentenyltransferase 0.34 Psyr_2689 DegT/DnrJ/EryC1/StrS aminotransferase low > 86
Pseudomonas stutzeri RCH2 0.75 Psest_0682 tRNA dimethylallyltransferase 0.26 Psest_1811 UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase
Escherichia coli HS(pFamp)R (ATCC 700891) 0.59 OHPLBJKB_03871 tRNA dimethylallyltransferase 0.30 OHPLBJKB_01458 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase
Klebsiella michiganensis M5al 0.59 BWI76_RS02530 tRNA dimethylallyltransferase 0.30 BWI76_RS26485 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase low > 92
Escherichia coli BL21 0.59 ECD_04038 delta(2)-isopentenylpyrophosphate tRNA-adenosine transferase 0.30 ECD_02179 uridine 5'-(beta-1-threo-pentapyranosyl-4-ulose diphosphate) aminotransferase, PLP-dependent low > 60
Escherichia coli ECOR27 0.59 NOLOHH_04525 miaA tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.31 NOLOHH_14620 arnB UDP-4-amino-4-deoxy-L-arabinose aminotransferase
Escherichia coli BW25113 0.59 b4171 miaA tRNA delta(2)-isopentenylpyrophosphate transferase (NCBI) 0.30 b2253 arnB uridine 5'-(beta-1-threo-pentapyranosyl-4-ulose diphosphate) aminotransferase, PLP-dependent (RefSeq) low > 76
Vibrio cholerae E7946 ATCC 55056 0.59 CSW01_01830 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.21 CSW01_01285 perosamine synthetase 0.90 11
Escherichia coli ECOR38 0.59 HEPCGN_10490 miaA tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.30 HEPCGN_22210 arnB UDP-4-amino-4-deoxy-L-arabinose aminotransferase low > 85
Escherichia coli ECRC62 0.59 BNILDI_06965 miaA tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.30 BNILDI_13535 arnB UDP-4-amino-4-deoxy-L-arabinose aminotransferase
Escherichia coli ECRC101 0.59 OKFHMN_12260 miaA tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.30 OKFHMN_22995 arnB UDP-4-amino-4-deoxy-L-arabinose aminotransferase
Escherichia coli ECRC98 0.59 JDDGAC_15900 miaA tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.30 JDDGAC_26960 arnB UDP-4-amino-4-deoxy-L-arabinose aminotransferase
Escherichia coli ECRC102 0.59 NIAGMN_10110 miaA tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.30 NIAGMN_20765 arnB UDP-4-amino-4-deoxy-L-arabinose aminotransferase
Escherichia coli Nissle 1917 0.59 ECOLIN_RS24225 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.30 ECOLIN_RS13125 UDP-4-amino-4-deoxy-L-arabinose aminotransferase low > 52
Escherichia fergusonii Becca 0.59 EFB2_04364 tRNA dimethylallyltransferase 0.31 EFB2_01603 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase low > 86
Escherichia coli ECRC99 0.59 KEDOAH_15895 miaA tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.30 KEDOAH_05200 arnB UDP-4-amino-4-deoxy-L-arabinose aminotransferase
Escherichia coli ECRC101 0.59 MCAODC_02775 miaA tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.30 MCAODC_14035 arnB UDP-4-amino-4-deoxy-L-arabinose aminotransferase
Enterobacter asburiae PDN3 0.59 EX28DRAFT_3368 tRNA dimethylallyltransferase 0.29 EX28DRAFT_4082 Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis low > 76
Enterobacter sp. TBS_079 0.58 MPMX20_00452 tRNA dimethylallyltransferase 0.29 MPMX20_04380 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase low > 85
Dickeya dadantii 3937 0.58 DDA3937_RS18615 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.29 DDA3937_RS21390 UDP-4-amino-4-deoxy-L-arabinose aminotransferase low > 74
Dickeya dianthicola ME23 0.58 DZA65_RS19685 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.29 DZA65_RS22610 UDP-4-amino-4-deoxy-L-arabinose aminotransferase low > 75
Rahnella sp. WP5 0.58 EX31_RS08825 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.33 EX31_RS14020 UDP-4-amino-4-deoxy-L-arabinose aminotransferase 0.50 73
Dickeya dianthicola 67-19 0.58 HGI48_RS18550 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.29 HGI48_RS21625 UDP-4-amino-4-deoxy-L-arabinose aminotransferase low > 71
Pectobacterium carotovorum WPP14 0.58 HER17_RS02580 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.33 HER17_RS06520 UDP-4-amino-4-deoxy-L-arabinose aminotransferase low > 75
Shewanella oneidensis MR-1 0.58 SO0602 miaA tRNA delta(2)-isopentenylpyrophosphate transferase (NCBI ptt file) 0.26 SO3270 polysaccharide biosynthesis protein (NCBI ptt file) low > 76
Shewanella loihica PV-4 0.57 Shew_0565 tRNA delta(2)-isopentenylpyrophosphate transferase (RefSeq) 0.22 Shew_1319 DegT/DnrJ/EryC1/StrS aminotransferase (RefSeq) low > 60
Serratia liquefaciens MT49 0.57 IAI46_01620 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.32 IAI46_11015 UDP-4-amino-4-deoxy-L-arabinose aminotransferase low > 86
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.57 GFF824 tRNA dimethylallyltransferase (EC 2.5.1.75) 0.31 GFF1858 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase (EC 2.6.1.-) low > 78
Pantoea sp. MT58 0.57 IAI47_02585 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.29 IAI47_21625 UDP-4-amino-4-deoxy-L-arabinose aminotransferase low > 76
Marinobacter adhaerens HP15 0.56 HP15_2500 tRNA delta(2)-isopentenylpyrophosphate transferase 0.25 HP15_2398 aminotransferase, DegT/DnrJ/EryC1/StrS family
Alteromonas macleodii MIT1002 0.56 MIT1002_03789 tRNA dimethylallyltransferase 0.23 MIT1002_01078 UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine transaminase
Shewanella amazonensis SB2B 0.56 Sama_3026 miaA tRNA delta(2)-isopentenylpyrophosphate transferase (RefSeq) 0.18 Sama_2257 DegT/DnrJ/EryC1/StrS family protein (RefSeq)
Shewanella sp. ANA-3 0.56 Shewana3_0596 miaA tRNA delta(2)-isopentenylpyrophosphate transferase (RefSeq) 0.27 Shewana3_1303 polysaccharide biosynthesis protein (RefSeq)
Erwinia tracheiphila SCR3 0.54 LU632_RS02050 miaA tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.30 LU632_RS16495 arnB UDP-4-amino-4-deoxy-L-arabinose aminotransferase low > 74
Dechlorosoma suillum PS 0.53 Dsui_1552 tRNA isopentenyltransferase MiaA 0.25 Dsui_0082 UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase
Rhodanobacter sp. FW510-T8 0.52 OKGIIK_06625 miaA tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.31 OKGIIK_10755 UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine transaminase
Dyella japonica UNC79MFTsu3.2 0.52 ABZR86_RS08370 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.18 ABZR86_RS18520 DegT/DnrJ/EryC1/StrS family aminotransferase
Herbaspirillum seropedicae SmR1 0.52 HSERO_RS04185 tRNA delta(2)-isopentenylpyrophosphate transferase 0.80 HSERO_RS10435 aminotransferase DegT
Rhodanobacter denitrificans FW104-10B01 0.51 LRK54_RS00635 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.18 LRK54_RS05160 DegT/DnrJ/EryC1/StrS family aminotransferase low > 59
Rhodanobacter denitrificans MT42 0.51 LRK55_RS00405 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.18 LRK55_RS04940 DegT/DnrJ/EryC1/StrS family aminotransferase
Paraburkholderia bryophila 376MFSha3.1 0.51 H281DRAFT_04711 tRNA dimethylallyltransferase 0.66 H281DRAFT_00805 dTDP-4-amino-4,6-dideoxygalactose transaminase
Paraburkholderia graminis OAS925 0.51 ABIE53_000875 tRNA dimethylallyltransferase 0.65 ABIE53_002021 dTDP-4-amino-4,6-dideoxygalactose transaminase
Ralstonia solanacearum PSI07 0.51 RPSI07_RS12065 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.68 RPSI07_RS17515 DegT/DnrJ/EryC1/StrS aminotransferase family protein
Ralstonia solanacearum GMI1000 0.51 RS_RS12855 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.65 RS_RS06630 DegT/DnrJ/EryC1/StrS aminotransferase family protein
Paraburkholderia sabiae LMG 24235 0.50 QEN71_RS26440 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.66 QEN71_RS22430 DegT/DnrJ/EryC1/StrS aminotransferase family protein
Ralstonia sp. UNC404CL21Col 0.50 ABZR87_RS00875 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.66 ABZR87_RS11420 DegT/DnrJ/EryC1/StrS aminotransferase family protein low > 80
Ralstonia solanacearum IBSBF1503 0.49 RALBFv3_RS05235 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.65 RALBFv3_RS15850 DegT/DnrJ/EryC1/StrS aminotransferase family protein
Ralstonia solanacearum UW163 0.49 UW163_RS08390 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.65 UW163_RS13295 DegT/DnrJ/EryC1/StrS aminotransferase family protein
Cupriavidus basilensis FW507-4G11 0.49 RR42_RS17210 tRNA delta(2)-isopentenylpyrophosphate transferase 0.63 RR42_RS30905 aminotransferase DegT
Burkholderia phytofirmans PsJN 0.49 BPHYT_RS03645 tRNA dimethylallyltransferase 0.65 BPHYT_RS08930 aminotransferase DegT
Castellaniella sp019104865 MT123 0.48 ABCV34_RS08790 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.16 ABCV34_RS12945 DegT/DnrJ/EryC1/StrS family aminotransferase
Variovorax sp. OAS795 0.46 ABID97_RS20320 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.33 ABID97_RS02145 DegT/DnrJ/EryC1/StrS family aminotransferase
Acidovorax sp. GW101-3H11 0.46 Ac3H11_319 tRNA dimethylallyltransferase (EC 2.5.1.75) 0.19 Ac3H11_1545 Bacillosamine/Legionaminic acid biosynthesis aminotransferase PglE; 4-keto-6-deoxy-N-Acetyl-D-hexosaminyl-(Lipid carrier) aminotransferase low > 79
Variovorax sp. SCN45 0.46 GFF4798 tRNA dimethylallyltransferase (EC 2.5.1.75) 0.19 GFF6873 Aminotransferase, DegT/DnrJ/EryC1/StrS family
Xanthomonas campestris pv. campestris strain 8004 0.44 Xcc-8004.3121.1 tRNA dimethylallyltransferase (EC 2.5.1.75) 0.18 Xcc-8004.3174.1 Aminotransferase
Acinetobacter radioresistens SK82 0.43 MPMX26_01208 tRNA dimethylallyltransferase 0.16 MPMX26_00061 GDP-perosamine synthase
Hydrogenophaga sp. GW460-11-11-14-LB1 0.43 GFF5491 tRNA dimethylallyltransferase (EC 2.5.1.75) 0.17 GFF1844 Aminotransferase low > 90
Synechococcus elongatus PCC 7942 0.30 Synpcc7942_2490 miaA tRNA delta(2)-isopentenylpyrophosphate transferase 0.26 Synpcc7942_0071 degT pleiotropic regulatory protein-like
Sinorhizobium meliloti 1021 0.28 SMc01435 tRNA delta(2)-isopentenylpyrophosphate transferase 0.20 SM_b21248 aminotransferase
Mucilaginibacter yixingensis YX-36 DSM 26809 0.27 ABZR88_RS17470 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.24 ABZR88_RS08945 DegT/DnrJ/EryC1/StrS aminotransferase family protein
Rhodopseudomonas palustris CGA009 0.26 TX73_010460 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.19 TX73_020615 DegT/DnrJ/EryC1/StrS family aminotransferase
Fusobacterium nucleatum SB010 0.26 HUW76_01190 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.22 HUW76_01355 DegT/DnrJ/EryC1/StrS family aminotransferase low > 35
Pedobacter sp. GW460-11-11-14-LB5 0.26 CA265_RS02960 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.24 CA265_RS01760 aminotransferase DegT low > 88
Pontibacter actiniarum KMM 6156, DSM 19842 0.26 CA264_12070 tRNA dimethylallyltransferase 0.23 CA264_00280 DegT/DnrJ/EryC1/StrS aminotransferase low > 74
Desulfovibrio vulgaris Hildenborough JW710 0.26 DVU1533 miaA tRNA delta(2)-isopentenylpyrophosphate transferase (TIGR) 0.31 DVU3010 lpsC aminotransferase, DegT/DnrJ/EryC1/StrS family (TIGR)
Sphingomonas koreensis DSMZ 15582 0.26 Ga0059261_0069 tRNA dimethylallyltransferase 0.22 Ga0059261_3110 Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis
Caulobacter crescentus NA1000 Δfur 0.25 CCNA_02183 tRNA delta(2)-isopentenylpyrophosphate transferase 0.26 CCNA_01064 perosamine synthetase
Caulobacter crescentus NA1000 0.25 CCNA_02183 tRNA delta(2)-isopentenylpyrophosphate transferase 0.26 CCNA_01064 perosamine synthetase
Desulfovibrio vulgaris Miyazaki F 0.25 DvMF_0174 tRNA delta(2)-isopentenylpyrophosphate transferase (RefSeq) 0.24 DvMF_1911 DegT/DnrJ/EryC1/StrS aminotransferase (RefSeq)
Echinicola vietnamensis KMM 6221, DSM 17526 0.24 Echvi_2323 tRNA dimethylallyltransferase 0.20 Echvi_3862 Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis
Bosea sp. OAE506 0.23 ABIE41_RS12880 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.20 ABIE41_RS03045 dTDP-4-amino-4,6-dideoxygalactose transaminase low > 77
Bacteroides thetaiotaomicron VPI-5482 0.23 BT4203 tRNA delta(2)-isopentenylpyrophosphate transferase (NCBI ptt file) 0.24 BT0612 putative aminotransferase (NCBI ptt file)
Azospirillum brasilense Sp245 0.23 AZOBR_RS06550 tRNA delta(2)-isopentenylpyrophosphate transferase 0.22 AZOBR_RS33710 putative aminotransferase
Phocaeicola dorei CL03T12C01 0.22 ABI39_RS00520 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.20 ABI39_RS11115 DegT/DnrJ/EryC1/StrS family aminotransferase low > 72
Bacteroides stercoris CC31F 0.22 HMPREF1181_RS06385 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.16 HMPREF1181_RS14960 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme low > 56
Phocaeicola vulgatus CL09T03C04 0.22 HMPREF1058_RS08065 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.21 HMPREF1058_RS03380 DegT/DnrJ/EryC1/StrS family aminotransferase low > 67
Brevundimonas sp. GW460-12-10-14-LB2 0.21 A4249_RS05030 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.15 A4249_RS13795 DegT/DnrJ/EryC1/StrS aminotransferase family protein
Magnetospirillum magneticum AMB-1 0.21 AMB_RS17735 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.25 AMB_RS00640 DegT/DnrJ/EryC1/StrS family aminotransferase
Parabacteroides merdae CL09T00C40 0.21 HMPREF1078_RS13930 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.19 HMPREF1078_RS01585 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme low > 61
Rhodospirillum rubrum S1H 0.19 Rru_A0466 tRNA isopentenyltransferase (NCBI) 0.24 Rru_A2746 DegT/DnrJ/EryC1/StrS aminotransferase (NCBI)
Phaeobacter inhibens DSM 17395 0.18 PGA1_c14200 tRNA delta(2)-isopentenylpyrophosphate transferase MiaA 0.20 PGA1_c05070 putative pyridoxal-phosphate-dependent aminotransferase

Not shown: 11 genomes with orthologs for PS417_02485 only; 1 genomes with orthologs for PS417_27245 only