Conservation of cofitness between Psest_0962 and Psest_4219 in Pseudomonas stutzeri RCH2

94 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas stutzeri RCH2 1.0 Psest_0962 DNA repair protein RecN 1.0 Psest_4219 DNA polymerase I 0.38 15
Pseudomonas sp. S08-1 0.84 OH686_17050 DNA repair protein RecN 0.78 OH686_12215 DNA polymerase I low > 80
Pseudomonas fluorescens FW300-N2E2 0.83 Pf6N2E2_3370 DNA repair protein RecN 0.74 Pf6N2E2_4162 DNA polymerase I (EC 2.7.7.7) 0.43 16
Pseudomonas fluorescens GW456-L13 0.82 PfGW456L13_5106 DNA repair protein RecN 0.71 PfGW456L13_594 DNA polymerase I (EC 2.7.7.7) low > 87
Pseudomonas fluorescens FW300-N1B4 0.82 Pf1N1B4_1178 DNA repair protein RecN 0.74 Pf1N1B4_1875 DNA polymerase I (EC 2.7.7.7) — —
Pseudomonas fluorescens SBW25-INTG 0.81 PFLU_RS25910 DNA repair protein RecN 0.72 PFLU_RS00395 DNA polymerase I low > 109
Pseudomonas fluorescens SBW25 0.81 PFLU_RS25910 DNA repair protein RecN 0.72 PFLU_RS00395 DNA polymerase I low > 109
Pseudomonas simiae WCS417 0.80 PS417_24070 recombination and repair protein 0.72 PS417_00405 DNA polymerase I 0.39 12
Pseudomonas fluorescens FW300-N2E3 0.80 AO353_05660 DNA repair protein RecN 0.75 AO353_10930 DNA polymerase I 0.31 45
Pseudomonas sp. RS175 0.80 PFR28_00071 DNA repair protein RecN 0.73 PFR28_04624 DNA polymerase I 0.21 81
Pseudomonas fluorescens FW300-N2C3 0.80 AO356_07510 DNA repair protein RecN 0.74 AO356_11465 DNA polymerase I 0.46 20
Pseudomonas putida KT2440 0.79 PP_4729 factor used in recombination and DNA repair 0.75 PP_0123 DNA polymerase I, 5 0.15 28
Pseudomonas syringae pv. syringae B728a ΔmexB 0.78 Psyr_4197 DNA replication and repair protein RecN 0.74 Psyr_0270 DNA polymerase I low > 86
Pseudomonas syringae pv. syringae B728a 0.78 Psyr_4197 DNA replication and repair protein RecN 0.74 Psyr_0270 DNA polymerase I low > 86
Marinobacter adhaerens HP15 0.51 HP15_3084 DNA repair protein RecN 0.55 HP15_293 DNA polymerase I 0.36 45
Shewanella amazonensis SB2B 0.46 Sama_1026 recombination and repair protein (RefSeq) 0.61 Sama_0093 DNA-directed DNA polymerase (RefSeq) low > 62
Serratia liquefaciens MT49 0.44 IAI46_19635 DNA repair protein RecN 0.61 IAI46_24985 DNA polymerase I low > 86
Vibrio cholerae E7946 ATCC 55056 0.43 CSW01_04395 DNA repair protein RecN 0.60 CSW01_00560 DNA polymerase I low > 62
Shewanella loihica PV-4 0.43 Shew_1196 recombination and repair protein (RefSeq) 0.59 Shew_3714 DNA polymerase I (RefSeq) low > 60
Pantoea sp. MT58 0.42 IAI47_04810 DNA repair protein RecN 0.61 IAI47_00430 DNA polymerase I 0.34 53
Rahnella sp. WP5 0.42 EX31_RS21760 DNA repair protein RecN 0.61 EX31_RS15905 DNA polymerase I low > 89
Shewanella oneidensis MR-1 0.42 SO3462 recN DNA repair protein RecN (NCBI ptt file) 0.60 SO4669 polA DNA polymerase I (NCBI ptt file) — —
Shewanella sp. ANA-3 0.42 Shewana3_1104 recombination and repair protein (RefSeq) 0.60 Shewana3_4109 DNA polymerase I (RefSeq) — —
Klebsiella michiganensis M5al 0.41 BWI76_RS21560 DNA repair protein RecN 0.60 BWI76_RS00355 DNA polymerase I low > 92
Kangiella aquimarina DSM 16071 0.41 B158DRAFT_0601 DNA replication and repair protein RecN 0.59 B158DRAFT_0499 DNA polymerase I (EC 2.7.7.7) low > 40
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.41 GFF4162 DNA repair protein RecN 0.60 GFF2216 DNA polymerase I (EC 2.7.7.7) 0.58 16
Pectobacterium carotovorum WPP14 0.41 HER17_RS17420 DNA repair protein RecN 0.61 HER17_RS21470 DNA polymerase I — —
Escherichia fergusonii Becca 0.40 EFB2_01277 DNA repair protein RecN 0.60 EFB2_04753 DNA polymerase I — —
Escherichia coli BL21 0.40 ECD_02504 recombination and repair protein 0.61 ECD_03749 5 — —
Dickeya dadantii 3937 0.40 DDA3937_RS04325 DNA repair protein RecN 0.60 DDA3937_RS00105 DNA polymerase I — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.40 OHPLBJKB_01091 DNA repair protein RecN 0.60 OHPLBJKB_04189 DNA polymerase I — —
Escherichia coli ECOR27 0.40 NOLOHH_12815 recN DNA repair protein RecN 0.61 NOLOHH_06280 polA DNA polymerase I — —
Escherichia coli BW25113 0.40 b2616 recN recombination and repair protein (NCBI) 0.61 b3863 polA DNA polymerase I (NCBI) low > 76
Escherichia coli ECRC62 0.40 BNILDI_11620 recN DNA repair protein RecN 0.60 BNILDI_05250 polA DNA polymerase I — —
Escherichia coli ECOR38 0.40 HEPCGN_20265 recN DNA repair protein RecN 0.60 HEPCGN_12785 polA DNA polymerase I — —
Escherichia coli ECRC99 0.40 KEDOAH_07075 recN DNA repair protein RecN 0.61 KEDOAH_14000 polA DNA polymerase I — —
Escherichia coli ECRC101 0.40 MCAODC_11670 recN DNA repair protein RecN 0.61 MCAODC_04650 polA DNA polymerase I — —
Escherichia coli Nissle 1917 0.40 ECOLIN_RS14775 DNA repair protein RecN 0.60 ECOLIN_RS22270 DNA polymerase I — —
Escherichia coli ECRC101 0.40 OKFHMN_21145 recN DNA repair protein RecN 0.61 OKFHMN_14150 polA DNA polymerase I — —
Escherichia coli ECRC102 0.40 NIAGMN_18915 recN DNA repair protein RecN 0.61 NIAGMN_11905 polA DNA polymerase I — —
Escherichia coli ECRC98 0.40 JDDGAC_24810 recN DNA repair protein RecN 0.61 JDDGAC_17775 polA DNA polymerase I — —
Enterobacter asburiae PDN3 0.40 EX28DRAFT_2719 DNA repair protein RecN 0.60 EX28DRAFT_4343 DNA polymerase I (EC 2.7.7.7) — —
Enterobacter sp. TBS_079 0.40 MPMX20_03486 DNA repair protein RecN 0.60 MPMX20_04601 DNA polymerase I low > 85
Dickeya dianthicola ME23 0.39 DZA65_RS04235 DNA repair protein RecN 0.60 DZA65_RS22235 DNA polymerase I — —
Dickeya dianthicola 67-19 0.39 HGI48_RS04320 DNA repair protein RecN 0.60 HGI48_RS21260 DNA polymerase I — —
Erwinia tracheiphila SCR3 0.39 LU632_RS16985 recN DNA repair protein RecN 0.61 LU632_RS23870 polA DNA polymerase I — —
Alteromonas macleodii MIT1002 0.38 MIT1002_01443 Recombination protein N 0.61 MIT1002_00014 DNA polymerase I 0.49 7
Dyella japonica UNC79MFTsu3.2 0.38 ABZR86_RS05665 DNA repair protein RecN 0.54 ABZR86_RS17015 DNA polymerase I 0.48 64
Xanthomonas campestris pv. campestris strain 8004 0.38 Xcc-8004.3431.1 DNA repair protein RecN 0.51 Xcc-8004.5105.1 DNA polymerase I (EC 2.7.7.7) — —
Herbaspirillum seropedicae SmR1 0.37 HSERO_RS03060 DNA repair protein 0.53 HSERO_RS02260 DNA polymerase I low > 78
Rhodanobacter denitrificans FW104-10B01 0.37 LRK54_RS17960 DNA repair protein RecN 0.56 LRK54_RS06840 DNA polymerase I low > 59
Rhodanobacter denitrificans MT42 0.37 LRK55_RS17815 DNA repair protein RecN 0.56 LRK55_RS06585 DNA polymerase I low > 63
Rhodanobacter sp. FW510-T8 0.37 OKGIIK_07340 recN DNA repair protein RecN 0.55 OKGIIK_16785 polA DNA polymerase I low > 52
Ralstonia solanacearum UW163 0.36 UW163_RS08210 DNA repair protein RecN 0.50 UW163_RS09920 DNA polymerase I — —
Ralstonia solanacearum PSI07 0.36 RPSI07_RS11890 DNA repair protein RecN 0.51 RPSI07_RS13480 DNA polymerase I low > 81
Ralstonia solanacearum IBSBF1503 0.36 RALBFv3_RS05415 DNA repair protein RecN 0.50 RALBFv3_RS03750 DNA polymerase I 0.46 41
Lysobacter sp. OAE881 0.36 ABIE51_RS11655 DNA repair protein RecN 0.52 ABIE51_RS02010 DNA polymerase I low > 62
Ralstonia solanacearum GMI1000 0.36 RS_RS13275 DNA repair protein RecN 0.50 RS_RS11195 DNA polymerase I low > 80
Ralstonia sp. UNC404CL21Col 0.36 ABZR87_RS01065 DNA repair protein RecN 0.51 ABZR87_RS15680 DNA polymerase I low > 80
Paraburkholderia sabiae LMG 24235 0.35 QEN71_RS26535 DNA repair protein RecN 0.52 QEN71_RS17885 DNA polymerase I — —
Cupriavidus basilensis FW507-4G11 0.35 RR42_RS05910 DNA repair protein 0.50 RR42_RS15050 DNA polymerase I low > 128
Dechlorosoma suillum PS 0.35 Dsui_3072 DNA repair protein RecN 0.51 Dsui_0459 DNA polymerase I 0.41 36
Acidovorax sp. GW101-3H11 0.35 Ac3H11_3460 DNA repair protein RecN 0.49 Ac3H11_1648 DNA polymerase I (EC 2.7.7.7) — —
Castellaniella sp019104865 MT123 0.34 ABCV34_RS07470 DNA repair protein RecN 0.47 ABCV34_RS02195 DNA polymerase I low > 48
Paraburkholderia bryophila 376MFSha3.1 0.34 H281DRAFT_04692 DNA replication and repair protein RecN 0.50 H281DRAFT_06022 DNA polymerase I low > 103
Paraburkholderia graminis OAS925 0.33 ABIE53_000856 DNA repair protein RecN (Recombination protein N) 0.51 ABIE53_004852 DNA polymerase-1 0.24 80
Variovorax sp. SCN45 0.33 GFF2357 DNA repair protein RecN 0.49 GFF4006 DNA polymerase I (EC 2.7.7.7) low > 127
Burkholderia phytofirmans PsJN 0.33 BPHYT_RS03560 DNA repair protein 0.50 BPHYT_RS33610 DNA polymerase I low > 109
Hydrogenophaga sp. GW460-11-11-14-LB1 0.32 GFF829 DNA repair protein RecN 0.46 GFF5584 DNA polymerase I (EC 2.7.7.7) low > 90
Acinetobacter radioresistens SK82 0.31 MPMX26_00239 DNA repair protein RecN 0.48 MPMX26_00574 DNA polymerase I 0.36 8
Magnetospirillum magneticum AMB-1 0.30 AMB_RS19520 DNA repair protein RecN 0.39 AMB_RS21305 DNA polymerase I — —
Bacteroides ovatus ATCC 8483 0.28 BACOVA_00200 DNA repair protein RecN 0.36 BACOVA_01357 DNA-directed DNA polymerase low > 94
Parabacteroides merdae CL09T00C40 0.28 HMPREF1078_RS02000 DNA repair protein RecN 0.36 HMPREF1078_RS06335 DNA polymerase I low > 61
Bacteroides thetaiotaomicron VPI-5482 0.28 BT1361 DNA repair protein recN (Recombination protein N) (NCBI ptt file) 0.36 BT3260 DNA polymerase I (NCBI ptt file) low > 81
Sphingomonas koreensis DSMZ 15582 0.28 Ga0059261_1026 DNA repair protein RecN 0.35 Ga0059261_2244 DNA polymerase I (EC 2.7.7.7) 0.33 18
Bacteroides stercoris CC31F 0.28 HMPREF1181_RS10900 DNA repair protein RecN 0.36 HMPREF1181_RS02070 DNA polymerase I low > 56
Bosea sp. OAE506 0.28 ABIE41_RS12645 DNA repair protein RecN 0.36 ABIE41_RS03570 DNA polymerase I 0.48 38
Azospirillum sp. SherDot2 0.27 MPMX19_01601 DNA repair protein RecN 0.36 MPMX19_04869 DNA polymerase I low > 112
Mucilaginibacter yixingensis YX-36 DSM 26809 0.27 ABZR88_RS06580 DNA repair protein RecN 0.36 ABZR88_RS20185 DNA polymerase I low > 71
Pedobacter sp. GW460-11-11-14-LB5 0.27 CA265_RS14855 DNA repair protein RecN 0.35 CA265_RS19630 DNA polymerase I low > 88
Azospirillum brasilense Sp245 0.27 AZOBR_RS12395 DNA repair protein RecN 0.37 AZOBR_RS30685 DNA polymerase — —
Echinicola vietnamensis KMM 6221, DSM 17526 0.27 Echvi_2067 DNA repair protein RecN 0.35 Echvi_1032 DNA polymerase I low > 79
Phocaeicola dorei CL03T12C01 0.27 ABI39_RS14500 DNA repair protein RecN 0.34 ABI39_RS05440 DNA polymerase I — —
Phocaeicola vulgatus CL09T03C04 0.26 HMPREF1058_RS18225 DNA repair protein RecN 0.33 HMPREF1058_RS11500 DNA polymerase I low > 67
Pontibacter actiniarum KMM 6156, DSM 19842 0.26 CA264_13235 DNA repair protein RecN 0.36 CA264_16535 DNA polymerase I — —
Rhodospirillum rubrum S1H 0.25 Rru_A0940 DNA repair protein RecN (NCBI) 0.35 Rru_A3514 DNA polymerase A (NCBI) — —
Phaeobacter inhibens DSM 17395 0.25 PGA1_c09720 DNA repair protein RecN 0.37 PGA1_c31780 DNA polymerase I 0.41 14
Fusobacterium nucleatum SB010 0.25 HUW76_08055 DNA repair protein RecN 0.28 HUW76_04385 DNA polymerase I low > 35
Synechococcus elongatus PCC 7942 0.24 Synpcc7942_1779 recN DNA repair protein RecN 0.31 Synpcc7942_0194 polA DNA polymerase I — —
Dinoroseobacter shibae DFL-12 0.24 Dshi_2413 DNA repair protein RecN (RefSeq) 0.38 Dshi_2909 DNA polymerase I (RefSeq) 0.27 44
Brevundimonas sp. GW460-12-10-14-LB2 0.23 A4249_RS02620 DNA repair protein RecN 0.36 A4249_RS13840 DNA polymerase I — —
Caulobacter crescentus NA1000 0.23 CCNA_02062 DNA repair protein recN 0.37 CCNA_03577 DNA polymerase I 0.58 15
Caulobacter crescentus NA1000 Δfur 0.23 CCNA_02062 DNA repair protein recN 0.37 CCNA_03577 DNA polymerase I low > 67
Mycobacterium tuberculosis H37Rv 0.19 Rv1696 Probable DNA repair protein RecN (recombination protein N) 0.27 Rv1629 Probable DNA polymerase I PolA — —
Bifidobacterium breve UCC2003 0.16 BBR_RS14030 DNA repair protein RecN 0.23 BBR_RS14315 DNA polymerase I 0.58 21

Not shown: 5 genomes with orthologs for Psest_0962 only; 2 genomes with orthologs for Psest_4219 only