Conservation of cofitness between GFF1973 and GFF3669 in Sphingobium sp. HT1-2

101 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Sphingobium sp. HT1-2 1.0 GFF1973 Ribonuclease HI (EC 3.1.26.4) 1.0 GFF3669 D-arabinose-5-phosphate isomerase (EC 5.3.1.13) 0.66 14
Agrobacterium fabrum C58 0.75 Atu0776 ribonuclease H 0.37 Atu3774 capsule expression protein — —
Sinorhizobium meliloti 1021 0.73 SMc00018 ribonuclease H 0.41 SMc02268 capsule expression protein — —
Rhizobium sp. OAE497 0.71 ABIE40_RS04115 ribonuclease HI 0.37 ABIE40_RS16240 KpsF/GutQ family sugar-phosphate isomerase — —
Magnetospirillum magneticum AMB-1 0.66 AMB_RS03905 ribonuclease H 0.42 AMB_RS19905 KpsF/GutQ family sugar-phosphate isomerase — —
Pantoea sp. MT58 0.65 IAI47_15330 ribonuclease HI 0.37 IAI47_17160 arabinose-5-phosphate isomerase KdsD — —
Caulobacter crescentus NA1000 Δfur 0.65 CCNA_03476 ribonuclease HI 0.43 CCNA_02346 arabinose-5-phosphate isomerase low > 67
Pantoea agglomerans CFBP13505 P0401 0.65 PagCFBP13505_RS09825 ribonuclease HI 0.38 PagCFBP13505_RS09325 arabinose-5-phosphate isomerase KdsD — —
Caulobacter crescentus NA1000 0.65 CCNA_03476 ribonuclease HI 0.43 CCNA_02346 arabinose-5-phosphate isomerase — —
Azospirillum sp. SherDot2 0.65 MPMX19_01081 Ribonuclease HI 0.43 MPMX19_02664 Arabinose 5-phosphate isomerase KdsD — —
Erwinia tracheiphila SCR3 0.64 LU632_RS01090 rnhA ribonuclease HI 0.37 LU632_RS21255 kdsD arabinose-5-phosphate isomerase KdsD — —
Escherichia coli Nissle 1917 0.64 ECOLIN_RS01170 ribonuclease HI 0.37 ECOLIN_RS18400 arabinose-5-phosphate isomerase KdsD — —
Xanthobacter sp. DMC5 0.64 GFF1720 Ribonuclease HI 0.42 GFF3814 Arabinose 5-phosphate isomerase KdsD — —
Paraburkholderia sabiae LMG 24235 0.64 QEN71_RS04750 ribonuclease HI 0.38 QEN71_RS01780 KpsF/GutQ family sugar-phosphate isomerase — —
Azospirillum brasilense Sp245 0.64 AZOBR_RS10505 ribonuclease H 0.40 AZOBR_RS18850 arabinose 5-phosphate isomerase low > 97
Klebsiella michiganensis M5al 0.64 BWI76_RS05450 ribonuclease HI 0.37 BWI76_RS25240 D-arabinose 5-phosphate isomerase low > 92
Erwinia tracheiphila HP pepo 2.2 0.64 IJEDHG_15390 rnhA ribonuclease HI 0.37 IJEDHG_13765 kdsD arabinose-5-phosphate isomerase KdsD — —
Serratia liquefaciens MT49 0.64 IAI46_04145 ribonuclease HI 0.37 IAI46_22445 arabinose-5-phosphate isomerase KdsD — —
Escherichia coli BL21 0.64 ECD_00207 ribonuclease HI 0.37 ECD_03062 D-arabinose 5-phosphate isomerase — —
Escherichia coli ECRC101 0.64 MCAODC_00485 rnhA ribonuclease HI 0.37 MCAODC_08485 kdsD arabinose-5-phosphate isomerase KdsD low > 88
Escherichia coli ECRC62 0.64 BNILDI_09355 rnhA ribonuclease HI 0.37 BNILDI_01770 kdsD arabinose-5-phosphate isomerase KdsD low > 75
Klebsiella pneumoniae MKP103 0.64 KDGMDA_13700 ribonuclease HI 0.37 KDGMDA_06055 arabinose-5-phosphate isomerase KdsD — —
Rahnella sp. WP5 0.64 EX31_RS21190 ribonuclease HI 0.37 EX31_RS12425 arabinose-5-phosphate isomerase KdsD — —
Escherichia coli ECOR27 0.64 NOLOHH_02315 rnhA ribonuclease HI 0.37 NOLOHH_09765 kdsD arabinose-5-phosphate isomerase KdsD low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.64 OHPLBJKB_03447 Ribonuclease HI 0.37 OHPLBJKB_00503 Arabinose 5-phosphate isomerase KdsD low > 74
Escherichia coli ECRC99 0.64 KEDOAH_18185 rnhA ribonuclease HI 0.37 KEDOAH_10185 kdsD arabinose-5-phosphate isomerase KdsD — —
Escherichia fergusonii Becca 0.64 EFB2_03829 Ribonuclease HI 0.37 EFB2_00626 Arabinose 5-phosphate isomerase KdsD low > 86
Escherichia coli ECRC98 0.64 JDDGAC_13565 rnhA ribonuclease HI 0.37 JDDGAC_21590 kdsD arabinose-5-phosphate isomerase KdsD low > 87
Escherichia coli BW25113 0.64 b0214 rnhA ribonuclease H (NCBI) 0.37 b3197 kdsD D-arabinose 5-phosphate isomerase (NCBI) — —
Escherichia coli ECRC102 0.64 NIAGMN_07820 rnhA ribonuclease HI 0.37 NIAGMN_15725 kdsD arabinose-5-phosphate isomerase KdsD — —
Escherichia coli ECOR38 0.64 HEPCGN_07910 rnhA ribonuclease HI 0.37 HEPCGN_16840 kdsD arabinose-5-phosphate isomerase KdsD low > 88
Escherichia coli ECRC100 0.64 OKFHMN_09970 rnhA ribonuclease HI 0.37 OKFHMN_17965 kdsD arabinose-5-phosphate isomerase KdsD low > 79
Pectobacterium carotovorum WPP14 0.63 HER17_RS05465 ribonuclease HI 0.37 HER17_RS20035 arabinose-5-phosphate isomerase KdsD — —
Paraburkholderia graminis OAS925 0.63 ABIE53_003009 ribonuclease HI 0.37 ABIE53_000723 arabinose-5-phosphate isomerase — —
Burkholderia phytofirmans PsJN 0.63 BPHYT_RS14220 ribonuclease H 0.38 BPHYT_RS02930 KpsF/GutQ family protein — —
Rhodopseudomonas palustris CGA009 0.63 TX73_022115 ribonuclease HI 0.41 TX73_004530 KpsF/GutQ family sugar-phosphate isomerase — —
Paraburkholderia bryophila 376MFSha3.1 0.63 H281DRAFT_04397 RNase HI 0.37 H281DRAFT_01922 arabinose-5-phosphate isomerase — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.63 GFF4046 Ribonuclease HI (EC 3.1.26.4) 0.37 GFF2941 Arabinose 5-phosphate isomerase (EC 5.3.1.13) — —
Ralstonia sp. UNC404CL21Col 0.63 ABZR87_RS14175 ribonuclease HI 0.40 ABZR87_RS07085 KpsF/GutQ family sugar-phosphate isomerase — —
Cupriavidus basilensis FW507-4G11 0.63 RR42_RS13580 ribonuclease H 0.38 RR42_RS02105 arabinose 5-phosphate isomerase — —
Erwinia amylovora T8 0.63 OLJFJH_18630 ribonuclease HI 0.38 OLJFJH_07095 arabinose-5-phosphate isomerase KdsD low > 58
Enterobacter asburiae PDN3 0.62 EX28DRAFT_2680 Ribonuclease HI 0.37 EX28DRAFT_3251 KpsF/GutQ family protein — —
Ralstonia solanacearum IBSBF1503 0.62 RALBFv3_RS02225 ribonuclease HI 0.40 RALBFv3_RS11195 KpsF/GutQ family sugar-phosphate isomerase — —
Ralstonia solanacearum UW163 0.62 UW163_RS15535 ribonuclease HI 0.40 UW163_RS02385 KpsF/GutQ family sugar-phosphate isomerase — —
Enterobacter sp. TBS_079 0.62 MPMX20_00899 Ribonuclease HI 0.37 MPMX20_04103 Arabinose 5-phosphate isomerase KdsD low > 85
Ralstonia solanacearum GMI1000 0.62 RS_RS07595 ribonuclease H 0.41 RS_RS02045 KpsF/GutQ family sugar-phosphate isomerase — —
Kangiella aquimarina DSM 16071 0.62 B158DRAFT_1063 Ribonuclease HI 0.37 B158DRAFT_2085 KpsF/GutQ family protein — —
Phaeobacter inhibens DSM 17395 0.62 PGA1_c00930 ribonuclease H 0.38 PGA1_c36010 arabinose 5-phosphate isomerase KdsD — —
Brevundimonas sp. GW460-12-10-14-LB2 0.62 A4249_RS05650 ribonuclease HI 0.34 A4249_RS12300 KpsF/GutQ family sugar-phosphate isomerase — —
Acidovorax sp. GW101-3H11 0.62 Ac3H11_480 Ribonuclease HI (EC 3.1.26.4) 0.39 Ac3H11_4270 Arabinose 5-phosphate isomerase (EC 5.3.1.13) — —
Ralstonia solanacearum PSI07 0.62 RPSI07_RS15220 ribonuclease HI 0.40 RPSI07_RS22105 KpsF/GutQ family sugar-phosphate isomerase — —
Shewanella amazonensis SB2B 0.61 Sama_1881 rnhA ribonuclease H (RefSeq) 0.34 Sama_3083 arabinose-5-phosphate isomerase (RefSeq) low > 62
Shewanella loihica PV-4 0.61 Shew_2112 ribonuclease H (RefSeq) 0.34 Shew_3306 KpsF/GutQ family protein (RefSeq) — —
Rhodospirillum rubrum S1H 0.61 Rru_A3054 Ribonuclease H (NCBI) 0.39 Rru_A0014 KpsF/GutQ (NCBI) — —
Castellaniella sp019104865 MT123 0.61 ABCV34_RS10475 ribonuclease HI 0.33 ABCV34_RS14370 KpsF/GutQ family sugar-phosphate isomerase — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.61 Psyr_1763 RNase HI 0.36 Psyr_4142 KpsF/GutQ — —
Vibrio cholerae E7946 ATCC 55056 0.61 CSW01_11385 ribonuclease HI 0.36 CSW01_12790 KpsF/GutQ family sugar-phosphate isomerase — —
Bosea sp. OAE506 0.61 ABIE41_RS23050 ribonuclease HI 0.39 ABIE41_RS06160 KpsF/GutQ family sugar-phosphate isomerase — —
Pseudomonas syringae pv. syringae B728a 0.61 Psyr_1763 RNase HI 0.36 Psyr_4142 KpsF/GutQ — —
Shewanella sp. ANA-3 0.61 Shewana3_2366 rnhA ribonuclease H (RefSeq) 0.36 Shewana3_0677 KpsF/GutQ family protein (RefSeq) — —
Marinobacter adhaerens HP15 0.61 HP15_1803 ribonuclease Hi chain A-like protein 0.33 HP15_2437 KpsF/GutQ family protein — —
Dyella japonica UNC79MFTsu3.2 0.61 ABZR86_RS07275 ribonuclease HI 0.38 ABZR86_RS19840 KpsF/GutQ family sugar-phosphate isomerase — —
Pseudomonas putida KT2440 0.60 PP_4142 ribonuclease H 0.38 PP_0957 D-arabinose 5-phosphate isomerase — —
Herbaspirillum seropedicae SmR1 0.60 HSERO_RS17110 ribonuclease H 0.37 HSERO_RS19830 sugar phosphate isomerase — —
Alteromonas macleodii MIT1002 0.60 MIT1002_01690 Ribonuclease HI 0.35 MIT1002_00832 Arabinose 5-phosphate isomerase KdsD — —
Pseudomonas segetis P6 0.60 MPMX49_02808 Ribonuclease HI 0.38 MPMX49_03853 Arabinose 5-phosphate isomerase KdsD — —
Pseudomonas sp. BP01 0.60 JOY50_RS07080 rnhA ribonuclease HI 0.37 JOY50_RS11155 SIS domain-containing protein — —
Lysobacter sp. OAE881 0.60 ABIE51_RS14100 ribonuclease HI 0.39 ABIE51_RS15930 KpsF/GutQ family sugar-phosphate isomerase — —
Desulfovibrio vulgaris Hildenborough JW710 0.60 DVU0689 rnhA ribonuclease HI (TIGR) 0.33 DVU0160 carbohydrate isomerase, KpsF/GutQ family (TIGR) — —
Pseudomonas sp. RS175 0.59 PFR28_01554 Ribonuclease HI 0.37 PFR28_00178 Arabinose 5-phosphate isomerase KdsD — —
Rhodanobacter sp000427505 FW510-R12 0.59 LRK53_RS12095 ribonuclease HI 0.40 LRK53_RS15680 KpsF/GutQ family sugar-phosphate isomerase — —
Pseudomonas fluorescens FW300-N2E3 0.59 AO353_23500 ribonuclease H 0.37 AO353_05155 D-arabinose 5-phosphate isomerase — —
Pseudomonas sp. SVBP6 0.59 COO64_RS19260 rnhA ribonuclease HI 0.37 COO64_RS04310 KpsF/GutQ family sugar-phosphate isomerase — —
Pseudomonas aeruginosa PA14 0.59 IKLFDK_08825 ribonuclease HI 0.38 IKLFDK_01795 arabinose-5-phosphate isomerase KdsD — —
Pseudomonas sp. DMC3 0.59 GFF1024 Ribonuclease HI 0.38 GFF1833 Arabinose 5-phosphate isomerase KdsD — —
Dechlorosoma suillum PS 0.59 Dsui_2482 ribonuclease HI 0.36 Dsui_1382 KpsF/GutQ family protein — —
Pseudomonas sp. S08-1 0.59 OH686_03570 Ribonuclease HI 0.40 OH686_08515 D-arabinose-5-phosphate isomerase — —
Xanthomonas campestris pv. campestris strain 8004 0.59 Xcc-8004.4033.1 Ribonuclease HI (EC 3.1.26.4) 0.42 Xcc-8004.1667.1 Arabinose 5-phosphate isomerase (EC 5.3.1.13) — —
Pseudomonas fluorescens SBW25-INTG 0.59 PFLU_RS12920 ribonuclease HI 0.37 PFLU_RS04425 KpsF/GutQ family sugar-phosphate isomerase — —
Pseudomonas fluorescens SBW25 0.59 PFLU_RS12920 ribonuclease HI 0.37 PFLU_RS04425 KpsF/GutQ family sugar-phosphate isomerase — —
Shewanella oneidensis MR-1 0.59 SO2560 rnhA ribonuclease HI (NCBI ptt file) 0.36 SO3956 carbohydrate isomerase, KpsF/GutQ family (NCBI ptt file) — —
Rhodanobacter sp. FW510-T8 0.59 OKGIIK_07990 rnhA ribonuclease HI 0.40 OKGIIK_02290 gutQ D-arabinose 5-phosphate isomerase — —
Dinoroseobacter shibae DFL-12 0.59 Dshi_0182 ribonuclease H (RefSeq) 0.40 Dshi_3588 KpsF/GutQ family protein (RefSeq) — —
Pseudomonas fluorescens GW456-L13 0.59 PfGW456L13_3338 Ribonuclease HI (EC 3.1.26.4) 0.37 PfGW456L13_5009 Arabinose 5-phosphate isomerase (EC 5.3.1.13) — —
Pseudomonas lactucae CFBP13502 0.59 GEMAOFIL_02691 Ribonuclease HI 0.37 GEMAOFIL_01080 Arabinose 5-phosphate isomerase KdsD — —
Pseudomonas fluorescens FW300-N2E2 0.58 Pf6N2E2_589 Ribonuclease HI (EC 3.1.26.4) 0.37 Pf6N2E2_3262 Arabinose 5-phosphate isomerase (EC 5.3.1.13) — —
Pseudomonas fluorescens FW300-N2C3 0.58 AO356_24490 ribonuclease H 0.37 AO356_07010 D-arabinose 5-phosphate isomerase — —
Pseudomonas simiae WCS417 0.58 PS417_12230 ribonuclease H 0.37 PS417_04370 D-arabinose 5-phosphate isomerase — —
Pseudomonas stutzeri RCH2 0.58 Psest_2073 Ribonuclease HI 0.39 Psest_3308 KpsF/GutQ family protein — —
Rhodanobacter denitrificans MT42 0.58 LRK55_RS16500 ribonuclease HI 0.39 LRK55_RS12600 KpsF/GutQ family sugar-phosphate isomerase — —
Variovorax sp. SCN45 0.58 GFF1119 Ribonuclease HI (EC 3.1.26.4) 0.35 GFF3271 D-arabinose-5-phosphate isomerase (EC 5.3.1.13) — —
Variovorax sp. OAS795 0.58 ABID97_RS14740 ribonuclease HI 0.38 ABID97_RS02630 KpsF/GutQ family sugar-phosphate isomerase — —
Rhodanobacter denitrificans FW104-10B01 0.58 LRK54_RS16775 ribonuclease HI 0.40 LRK54_RS12900 KpsF/GutQ family sugar-phosphate isomerase — —
Desulfovibrio vulgaris Miyazaki F 0.57 DvMF_2669 rnhA ribonuclease H (RefSeq) 0.34 DvMF_2308 KpsF/GutQ family protein (RefSeq) — —
Pseudomonas fluorescens FW300-N1B4 0.57 Pf1N1B4_4598 Ribonuclease HI (EC 3.1.26.4) 0.36 Pf1N1B4_1075 Arabinose 5-phosphate isomerase (EC 5.3.1.13) — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.57 GFF4259 Ribonuclease HI (EC 3.1.26.4) 0.37 GFF2442 Arabinose 5-phosphate isomerase (EC 5.3.1.13) — —
Methylophilus sp. DMC18 0.54 GFF1319 Ribonuclease H 0.33 GFF2773 Arabinose 5-phosphate isomerase KdsD — —
Echinicola vietnamensis KMM 6221, DSM 17526 0.49 Echvi_1813 Ribonuclease HI 0.38 Echvi_0165 KpsF/GutQ family protein 0.24 63
Pontibacter actiniarum KMM 6156, DSM 19842 0.47 CA264_00830 ribonuclease HI 0.38 CA264_20105 D-arabinose 5-phosphate isomerase — —
Pedobacter sp. GW460-11-11-14-LB5 0.45 CA265_RS05225 ribonuclease HI 0.36 CA265_RS08900 D-arabinose 5-phosphate isomerase — —
Mucilaginibacter yixingensis YX-36 DSM 26809 0.41 ABZR88_RS09645 ribonuclease HI 0.29 ABZR88_RS12810 SIS domain-containing protein — —
Cellulophaga baltica 18 0.39 M666_RS04100 ribonuclease HI 0.35 M666_RS10585 KpsF/GutQ family sugar-phosphate isomerase — —

Not shown: 2 genomes with orthologs for GFF1973 only; 7 genomes with orthologs for GFF3669 only