Conservation of cofitness between HP15_487 and HP15_3403 in Marinobacter adhaerens HP15

93 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Marinobacter adhaerens HP15 1.0 HP15_487 DNA repair protein RadA 1.0 HP15_3403 UvrD/REP helicase 0.72 14
Enterobacter asburiae PDN3 0.73 EX28DRAFT_3597 DNA repair protein RadA 0.58 EX28DRAFT_4482 ATP-dependent DNA helicase UvrD (EC 3.6.1.-) low > 76
Enterobacter sp. TBS_079 0.73 MPMX20_00694 DNA repair protein RadA 0.58 MPMX20_04463 DNA helicase II low > 85
Escherichia coli BL21 0.72 ECD_04265 DNA repair protein 0.59 ECD_03689 DNA-dependent ATPase I and helicase II — —
Rahnella sp. WP5 0.72 EX31_RS04030 DNA repair protein RadA 0.57 EX31_RS15175 DNA helicase II low > 89
Escherichia coli HS(pFamp)R (ATCC 700891) 0.72 OHPLBJKB_03672 DNA repair protein RadA 0.59 OHPLBJKB_04237 DNA helicase II low > 73
Escherichia coli Nissle 1917 0.72 ECOLIN_RS25190 DNA repair protein RadA 0.59 ECOLIN_RS21885 DNA helicase II low > 52
Escherichia fergusonii Becca 0.72 EFB2_04057 DNA repair protein RadA 0.59 EFB2_04824 DNA helicase II low > 86
Escherichia coli BW25113 0.72 b4389 radA predicted repair protein (NCBI) 0.59 b3813 uvrD DNA-dependent ATPase I and helicase II (NCBI) 0.53 6
Escherichia coli ECRC98 0.72 JDDGAC_14790 radA DNA repair protein RadA 0.59 JDDGAC_18035 uvrD DNA helicase II — —
Escherichia coli ECRC101 0.72 MCAODC_01710 radA DNA repair protein RadA 0.59 MCAODC_04915 uvrD DNA helicase II — —
Escherichia coli ECRC62 0.72 BNILDI_08075 radA DNA repair protein RadA 0.59 BNILDI_04995 uvrD DNA helicase II — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.72 GFF1057 DNA repair protein RadA 0.59 GFF241 ATP-dependent DNA helicase UvrD/PcrA 0.46 4
Escherichia coli ECRC101 0.72 OKFHMN_11195 radA DNA repair protein RadA 0.59 OKFHMN_14410 uvrD DNA helicase II — —
Escherichia coli ECRC99 0.72 KEDOAH_16960 radA DNA repair protein RadA 0.59 KEDOAH_13740 uvrD DNA helicase II — —
Escherichia coli ECRC102 0.72 NIAGMN_09045 radA DNA repair protein RadA 0.59 NIAGMN_12165 uvrD DNA helicase II — —
Escherichia coli ECOR38 0.72 HEPCGN_09195 radA DNA repair protein RadA 0.59 HEPCGN_13115 uvrD DNA helicase II low > 85
Shewanella sp. ANA-3 0.72 Shewana3_1049 DNA repair protein RadA (RefSeq) 0.58 Shewana3_0469 uvrD DNA-dependent helicase II (RefSeq) 0.48 11
Escherichia coli ECOR27 0.72 NOLOHH_03520 radA DNA repair protein RadA 0.59 NOLOHH_06540 uvrD DNA helicase II low > 57
Klebsiella michiganensis M5al 0.72 BWI76_RS04165 DNA repair protein RadA 0.59 BWI76_RS01220 DNA-dependent helicase II low > 92
Shewanella oneidensis MR-1 0.72 SO1226 radA DNA repair protein RadA (NCBI ptt file) 0.57 SO0467 uvrD DNA helicase II (NCBI ptt file) 0.55 8
Pantoea sp. MT58 0.72 IAI47_16345 DNA repair protein RadA 0.57 IAI47_18390 DNA helicase II low > 76
Erwinia tracheiphila SCR3 0.71 LU632_RS02550 radA DNA repair protein RadA 0.59 LU632_RS24125 uvrD DNA helicase II — —
Serratia liquefaciens MT49 0.71 IAI46_02945 DNA repair protein RadA 0.59 IAI46_00735 DNA helicase II low > 86
Alteromonas macleodii MIT1002 0.70 MIT1002_02706 Lon protease 2 0.59 MIT1002_00153 DNA helicase II low > 70
Shewanella amazonensis SB2B 0.70 Sama_0981 DNA repair protein RadA (RefSeq) 0.57 Sama_0419 uvrD DNA-dependent helicase II (RefSeq) 0.34 41
Pectobacterium carotovorum WPP14 0.69 HER17_RS19085 DNA repair protein RadA 0.59 HER17_RS01360 DNA helicase II low > 75
Vibrio cholerae E7946 ATCC 55056 0.69 CSW01_11870 DNA repair protein RadA 0.56 CSW01_01015 DNA helicase II 0.78 8
Dickeya dianthicola ME23 0.68 DZA65_RS02485 DNA repair protein RadA 0.58 DZA65_RS21080 DNA helicase II low > 75
Dickeya dianthicola 67-19 0.68 HGI48_RS02380 DNA repair protein RadA 0.58 HGI48_RS20035 DNA helicase II low > 71
Dickeya dadantii 3937 0.68 DDA3937_RS02420 DNA repair protein RadA 0.59 DDA3937_RS19880 DNA helicase II low > 74
Pseudomonas fluorescens GW456-L13 0.65 PfGW456L13_1442 DNA repair protein RadA 0.61 PfGW456L13_724 ATP-dependent DNA helicase UvrD/PcrA 0.27 59
Pseudomonas fluorescens FW300-N2E3 0.64 AO353_13980 DNA repair protein RadA 0.61 AO353_10055 DNA helicase II 0.45 15
Pseudomonas sp. RS175 0.64 PFR28_03792 DNA repair protein RadA 0.61 PFR28_04523 DNA helicase II low > 88
Pseudomonas fluorescens SBW25 0.64 PFLU_RS26230 DNA repair protein RadA 0.61 PFLU_RS29900 DNA helicase II low > 109
Pseudomonas fluorescens SBW25-INTG 0.64 PFLU_RS26230 DNA repair protein RadA 0.61 PFLU_RS29900 DNA helicase II 0.20 45
Pseudomonas fluorescens FW300-N1B4 0.64 Pf1N1B4_2768 DNA repair protein RadA 0.61 Pf1N1B4_2005 ATP-dependent DNA helicase UvrD/PcrA 0.28 42
Pseudomonas fluorescens FW300-N2C3 0.64 AO356_15680 DNA repair protein RadA 0.62 AO356_11990 DNA helicase II 0.67 6
Pseudomonas fluorescens FW300-N2E2 0.64 Pf6N2E2_5076 DNA repair protein RadA 0.62 Pf6N2E2_4273 ATP-dependent DNA helicase UvrD/PcrA 0.33 13
Pseudomonas syringae pv. syringae B728a 0.64 Psyr_4275 DNA replication and repair protein RadA 0.61 Psyr_5065 ATP-dependent DNA helicase UvrD low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.64 Psyr_4275 DNA replication and repair protein RadA 0.61 Psyr_5065 ATP-dependent DNA helicase UvrD low > 86
Pseudomonas sp. S08-1 0.64 OH686_16185 DNA repair protein RadA 0.60 OH686_13045 ATP-dependent DNA helicase UvrD/PcrA low > 80
Pseudomonas putida KT2440 0.64 PP_4644 DNA repair enzyme 0.63 PP_5352 DNA-dependent ATPase I and helicase II, nucleotide Excision Repair Complex low > 96
Pseudomonas stutzeri RCH2 0.63 Psest_3401 DNA repair protein RadA 0.61 Psest_4098 Superfamily I DNA and RNA helicases 0.28 22
Kangiella aquimarina DSM 16071 0.62 B158DRAFT_0877 DNA replication and repair protein RadA 0.60 B158DRAFT_0238 Superfamily I DNA and RNA helicases 0.56 14
Xanthomonas campestris pv. campestris strain 8004 0.61 Xcc-8004.3812.1 DNA repair protein RadA 0.53 Xcc-8004.5114.1 ATP-dependent DNA helicase UvrD/PcrA low > 74
Lysobacter sp. OAE881 0.60 ABIE51_RS07685 DNA repair protein RadA 0.54 ABIE51_RS01985 DNA helicase II low > 62
Rhodanobacter denitrificans FW104-10B01 0.59 LRK54_RS02525 DNA repair protein RadA 0.54 LRK54_RS06850 DNA helicase II 0.38 18
Rhodanobacter denitrificans MT42 0.59 LRK55_RS02280 DNA repair protein RadA 0.54 LRK55_RS06595 DNA helicase II — —
Rhodanobacter sp. FW510-T8 0.59 OKGIIK_09580 radA DNA repair protein RadA 0.54 OKGIIK_16775 DNA helicase low > 52
Dyella japonica UNC79MFTsu3.2 0.59 ABZR86_RS08845 DNA repair protein RadA 0.55 ABZR86_RS16965 DNA helicase II 0.91 2
Ralstonia sp. UNC404CL21Col 0.55 ABZR87_RS11670 DNA repair protein RadA 0.42 ABZR87_RS15705 UvrD-helicase domain-containing protein low > 80
Cupriavidus basilensis FW507-4G11 0.54 RR42_RS12030 DNA repair protein RadA 0.40 RR42_RS15090 DNA helicase — —
Ralstonia solanacearum GMI1000 0.54 RS_RS06880 DNA repair protein RadA 0.41 RS_RS11220 DNA-dependent helicase low > 80
Ralstonia solanacearum IBSBF1503 0.54 RALBFv3_RS00210 DNA repair protein RadA 0.41 RALBFv3_RS03775 DNA-dependent helicase — —
Ralstonia solanacearum UW163 0.54 UW163_RS13540 DNA repair protein RadA 0.41 UW163_RS09895 DNA-dependent helicase — —
Paraburkholderia sabiae LMG 24235 0.54 QEN71_RS06320 DNA repair protein RadA 0.42 QEN71_RS05110 3'-5' exonuclease — —
Dechlorosoma suillum PS 0.54 Dsui_2413 DNA repair protein RadA 0.44 Dsui_1227 DNA/RNA helicase, superfamily I low > 51
Ralstonia solanacearum PSI07 0.53 RPSI07_RS17270 DNA repair protein RadA 0.41 RPSI07_RS13455 DNA-dependent helicase — —
Variovorax sp. OAS795 0.53 ABID97_RS03770 DNA repair protein RadA 0.41 ABID97_RS09150 UvrD-helicase domain-containing protein low > 91
Burkholderia phytofirmans PsJN 0.53 BPHYT_RS12235 DNA repair protein RadA 0.42 BPHYT_RS13840 DNA-dependent helicase — —
Variovorax sp. SCN45 0.53 GFF5087 DNA repair protein RadA 0.40 GFF4000 ATP-dependent DNA helicase UvrD/PcrA (EC 3.6.4.12) low > 127
Paraburkholderia graminis OAS925 0.53 ABIE53_002526 DNA repair protein RadA/Sms 0.42 ABIE53_002936 DNA helicase-2/ATP-dependent DNA helicase PcrA — —
Paraburkholderia bryophila 376MFSha3.1 0.53 H281DRAFT_00590 DNA replication and repair protein RadA 0.42 H281DRAFT_04469 ATP-dependent DNA helicase UvrD — —
Herbaspirillum seropedicae SmR1 0.53 HSERO_RS10745 DNA repair protein RadA 0.41 HSERO_RS02160 DNA-dependent helicase 0.39 24
Castellaniella sp019104865 MT123 0.51 ABCV34_RS02345 DNA repair protein RadA 0.40 ABCV34_RS05210 UvrD-helicase domain-containing protein low > 48
Acidovorax sp. GW101-3H11 0.50 Ac3H11_3371 DNA repair protein RadA 0.41 Ac3H11_1660 ATP-dependent DNA helicase UvrD/PcrA low > 79
Hydrogenophaga sp. GW460-11-11-14-LB1 0.49 GFF1833 DNA repair protein RadA 0.40 GFF5598 ATP-dependent DNA helicase UvrD/PcrA — —
Echinicola vietnamensis KMM 6221, DSM 17526 0.43 Echvi_1031 DNA repair protein RadA 0.33 Echvi_0292 Superfamily I DNA and RNA helicases — —
Phocaeicola vulgatus CL09T03C04 0.43 HMPREF1058_RS14715 DNA repair protein RadA 0.30 HMPREF1058_RS03305 UvrD-helicase domain-containing protein 0.45 36
Phocaeicola dorei CL03T12C01 0.43 ABI39_RS10420 DNA repair protein RadA 0.30 ABI39_RS17735 UvrD-helicase domain-containing protein — —
Dinoroseobacter shibae DFL-12 0.42 Dshi_2129 DNA repair protein RadA (RefSeq) 0.33 Dshi_2483 UvrD/REP helicase (RefSeq) — —
Bosea sp. OAE506 0.42 ABIE41_RS17800 DNA repair protein RadA 0.34 ABIE41_RS12730 UvrD-helicase domain-containing protein 0.39 36
Phaeobacter inhibens DSM 17395 0.42 PGA1_c10840 DNA repair protein RadA 0.33 PGA1_c09450 DNA helicase II UvrD low > 62
Pontibacter actiniarum KMM 6156, DSM 19842 0.42 CA264_17125 DNA repair protein RadA 0.33 CA264_07795 ATP-dependent DNA helicase — —
Bacteroides stercoris CC31F 0.42 HMPREF1181_RS00075 DNA repair protein RadA 0.31 HMPREF1181_RS16505 UvrD-helicase domain-containing protein low > 56
Bacteroides ovatus ATCC 8483 0.42 BACOVA_03019 DNA repair protein RadA 0.32 BACOVA_02365 UvrD/REP helicase — —
Sphingomonas koreensis DSMZ 15582 0.42 Ga0059261_0751 DNA repair protein RadA 0.34 Ga0059261_0249 Superfamily I DNA and RNA helicases 0.40 10
Pedobacter sp. GW460-11-11-14-LB5 0.42 CA265_RS22660 DNA repair protein RadA 0.30 CA265_RS12980 ATP-dependent DNA helicase — —
Bacteroides thetaiotaomicron VPI-5482 0.41 BT2406 putative DNA repair protein (NCBI ptt file) 0.32 BT0657 ATP-dependent DNA helicase (NCBI ptt file) — —
Parabacteroides merdae CL09T00C40 0.41 HMPREF1078_RS08395 DNA repair protein RadA 0.32 HMPREF1078_RS03560 3'-5' exonuclease low > 61
Azospirillum brasilense Sp245 0.41 AZOBR_RS08320 DNA repair protein RadA 0.35 AZOBR_RS12445 DNA helicase II 0.52 29
Azospirillum sp. SherDot2 0.41 MPMX19_00904 DNA repair protein RadA 0.34 MPMX19_01610 ATP-dependent DNA helicase PcrA low > 112
Magnetospirillum magneticum AMB-1 0.41 AMB_RS10555 DNA repair protein RadA 0.34 AMB_RS03725 DNA helicase II low > 64
Caulobacter crescentus NA1000 Δfur 0.41 CCNA_01732 DNA repair protein RadA 0.34 CCNA_01596 DNA helicase II low > 67
Caulobacter crescentus NA1000 0.41 CCNA_01732 DNA repair protein RadA 0.34 CCNA_01596 DNA helicase II 0.83 2
Synechococcus elongatus PCC 7942 0.40 Synpcc7942_1452 radA DNA repair protein RadA 0.29 Synpcc7942_2168 pcrA ATP-dependent DNA helicase, Rep family low > 38
Rhodospirillum rubrum S1H 0.40 Rru_A0406 DNA repair protein RadA (NCBI) 0.33 Rru_A1536 UvrD/REP helicase (NCBI) 0.76 20
Mucilaginibacter yixingensis YX-36 DSM 26809 0.40 ABZR88_RS20495 DNA repair protein RadA 0.30 ABZR88_RS07840 ATP-dependent helicase — —
Brevundimonas sp. GW460-12-10-14-LB2 0.40 A4249_RS03745 DNA repair protein RadA 0.32 A4249_RS04960 UvrD-helicase domain-containing protein low > 48
Shewanella loihica PV-4 0.39 Shew_2807 DNA repair protein RadA (RefSeq) 0.57 Shew_3385 uvrD DNA-dependent helicase II (RefSeq) 0.55 24
Fusobacterium nucleatum SB010 0.34 HUW76_02270 DNA repair protein RadA 0.30 HUW76_07175 UvrD-helicase domain-containing protein low > 35
Bifidobacterium breve UCC2003 0.34 BBR_RS18740 DNA repair protein RadA 0.31 BBR_RS14985 ATP-dependent DNA helicase PcrA low > 34
Mycobacterium tuberculosis H37Rv 0.33 Rv3585 DNA repair protein RadA (DNA repair protein SMS) 0.31 Rv0949 Probable ATP-dependent DNA helicase II UvrD1 low > 58

Not shown: 8 genomes with orthologs for HP15_487 only; 0 genomes with orthologs for HP15_3403 only