Conservation of cofitness between GFF5584 and GFF2500 in Hydrogenophaga sp. GW460-11-11-14-LB1

97 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Hydrogenophaga sp. GW460-11-11-14-LB1 1.0 GFF5584 DNA polymerase I (EC 2.7.7.7) 1.0 GFF2500 RecA protein 0.80 7
Variovorax sp. SCN45 0.77 GFF4006 DNA polymerase I (EC 2.7.7.7) 0.78 GFF5390 RecA protein low > 127
Variovorax sp. OAS795 0.75 ABID97_RS09180 DNA polymerase I 0.79 ABID97_RS02275 recombinase RecA low > 91
Acidovorax sp. GW101-3H11 0.74 Ac3H11_1648 DNA polymerase I (EC 2.7.7.7) 0.78 Ac3H11_1255 RecA protein — —
Ralstonia solanacearum GMI1000 0.60 RS_RS11195 DNA polymerase I 0.70 RS_RS02760 DNA recombination/repair protein RecA — —
Ralstonia solanacearum UW163 0.59 UW163_RS09920 DNA polymerase I 0.69 UW163_RS01625 recombinase RecA — —
Ralstonia solanacearum IBSBF1503 0.59 RALBFv3_RS03750 DNA polymerase I 0.69 RALBFv3_RS12010 recombinase RecA 0.65 11
Ralstonia solanacearum PSI07 0.59 RPSI07_RS13480 DNA polymerase I 0.69 RPSI07_RS21260 recombinase RecA low > 81
Ralstonia sp. UNC404CL21Col 0.59 ABZR87_RS15680 DNA polymerase I 0.69 ABZR87_RS07965 recombinase RecA 0.64 23
Herbaspirillum seropedicae SmR1 0.59 HSERO_RS02260 DNA polymerase I 0.72 HSERO_RS03270 protein RecA 0.67 3
Paraburkholderia sabiae LMG 24235 0.57 QEN71_RS17885 DNA polymerase I 0.75 QEN71_RS02335 recombinase RecA — —
Cupriavidus basilensis FW507-4G11 0.57 RR42_RS15050 DNA polymerase I 0.71 RR42_RS03080 recombinase RecA 0.53 20
Paraburkholderia graminis OAS925 0.56 ABIE53_004852 DNA polymerase-1 0.74 ABIE53_003448 recombination protein RecA 0.53 1
Burkholderia phytofirmans PsJN 0.56 BPHYT_RS33610 DNA polymerase I 0.73 BPHYT_RS16360 recombinase RecA — —
Paraburkholderia bryophila 376MFSha3.1 0.56 H281DRAFT_06022 DNA polymerase I 0.74 H281DRAFT_04208 RecA protein low > 103
Dechlorosoma suillum PS 0.53 Dsui_0459 DNA polymerase I 0.70 Dsui_0707 protein RecA 0.41 10
Castellaniella sp019104865 MT123 0.53 ABCV34_RS02195 DNA polymerase I 0.75 ABCV34_RS04460 recombinase RecA low > 48
Kangiella aquimarina DSM 16071 0.49 B158DRAFT_0499 DNA polymerase I (EC 2.7.7.7) 0.68 B158DRAFT_1531 protein RecA 0.65 4
Dyella japonica UNC79MFTsu3.2 0.48 ABZR86_RS17015 DNA polymerase I 0.64 ABZR86_RS00660 recombinase RecA 0.53 5
Rhodanobacter denitrificans MT42 0.47 LRK55_RS06585 DNA polymerase I 0.68 LRK55_RS14695 recombinase RecA low > 63
Rhodanobacter denitrificans FW104-10B01 0.47 LRK54_RS06840 DNA polymerase I 0.68 LRK54_RS14980 recombinase RecA low > 59
Pseudomonas sp. S08-1 0.47 OH686_12215 DNA polymerase I 0.64 OH686_18205 protein RecA low > 80
Shewanella amazonensis SB2B 0.47 Sama_0093 DNA-directed DNA polymerase (RefSeq) 0.63 Sama_1046 recA recombinase A (RefSeq) low > 62
Rhodanobacter sp. FW510-T8 0.46 OKGIIK_16785 polA DNA polymerase I 0.68 OKGIIK_03740 recA recombinase RecA low > 52
Lysobacter sp. OAE881 0.46 ABIE51_RS02010 DNA polymerase I 0.64 ABIE51_RS07800 recombinase RecA low > 62
Pseudomonas stutzeri RCH2 0.46 Psest_4219 DNA polymerase I 0.66 Psest_2872 protein RecA 0.40 4
Vibrio cholerae E7946 ATCC 55056 0.46 CSW01_00560 DNA polymerase I 0.65 CSW01_02875 DNA recombination/repair protein RecA low > 62
Marinobacter adhaerens HP15 0.45 HP15_293 DNA polymerase I 0.65 HP15_1048 recombinase A 0.35 60
Alteromonas macleodii MIT1002 0.45 MIT1002_00014 DNA polymerase I 0.66 MIT1002_00955 Recombinase A low > 70
Shewanella loihica PV-4 0.45 Shew_3714 DNA polymerase I (RefSeq) 0.64 Shew_1215 recA recombinase A (RefSeq) 0.41 7
Xanthomonas campestris pv. campestris strain 8004 0.45 Xcc-8004.5105.1 DNA polymerase I (EC 2.7.7.7) 0.64 Xcc-8004.3111.1 RecA protein — —
Shewanella sp. ANA-3 0.44 Shewana3_4109 DNA polymerase I (RefSeq) 0.63 Shewana3_1126 recA recombinase A (RefSeq) — —
Shewanella oneidensis MR-1 0.44 SO4669 polA DNA polymerase I (NCBI ptt file) 0.63 SO3430 recA recA protein (NCBI ptt file) — —
Pseudomonas putida KT2440 0.44 PP_0123 DNA polymerase I, 5 0.65 PP_1629 Protein RecA 0.46 13
Pseudomonas fluorescens SBW25 0.44 PFLU_RS00395 DNA polymerase I 0.66 PFLU_RS05885 recombinase RecA low > 109
Pseudomonas fluorescens SBW25-INTG 0.44 PFLU_RS00395 DNA polymerase I 0.66 PFLU_RS05885 recombinase RecA 0.29 48
Pseudomonas fluorescens FW300-N2E3 0.44 AO353_10930 DNA polymerase I 0.65 AO353_16805 recombinase RecA 0.60 5
Pseudomonas simiae WCS417 0.44 PS417_00405 DNA polymerase I 0.66 PS417_05815 recombinase RecA 0.36 11
Pseudomonas fluorescens GW456-L13 0.44 PfGW456L13_594 DNA polymerase I (EC 2.7.7.7) 0.65 PfGW456L13_4668 RecA protein low > 87
Pantoea sp. MT58 0.43 IAI47_00430 DNA polymerase I 0.63 IAI47_04300 recombinase RecA 0.77 1
Pseudomonas fluorescens FW300-N2E2 0.43 Pf6N2E2_4162 DNA polymerase I (EC 2.7.7.7) 0.65 Pf6N2E2_2993 RecA protein — —
Pseudomonas fluorescens FW300-N2C3 0.43 AO356_11465 DNA polymerase I 0.65 AO356_05670 recombinase RecA 0.36 20
Enterobacter asburiae PDN3 0.43 EX28DRAFT_4343 DNA polymerase I (EC 2.7.7.7) 0.63 EX28DRAFT_2785 protein RecA — —
Dickeya dadantii 3937 0.43 DDA3937_RS00105 DNA polymerase I 0.64 DDA3937_RS16245 recombinase RecA — —
Escherichia coli ECRC99 0.43 KEDOAH_14000 polA DNA polymerase I 0.63 KEDOAH_07430 recA recombinase RecA — —
Escherichia coli BW25113 0.43 b3863 polA DNA polymerase I (NCBI) 0.63 b2699 recA recombinase A (NCBI) 0.43 2
Escherichia coli ECOR27 0.43 NOLOHH_06280 polA DNA polymerase I 0.63 NOLOHH_12545 recA recombinase RecA — —
Escherichia coli ECRC101 0.43 MCAODC_04650 polA DNA polymerase I 0.63 MCAODC_11230 recA recombinase RecA — —
Enterobacter sp. TBS_079 0.43 MPMX20_04601 DNA polymerase I 0.63 MPMX20_03580 Protein RecA 0.45 1
Escherichia coli ECRC98 0.43 JDDGAC_17775 polA DNA polymerase I 0.63 JDDGAC_24370 recA recombinase RecA — —
Pseudomonas sp. RS175 0.43 PFR28_04624 DNA polymerase I 0.65 PFR28_00472 Protein RecA low > 88
Escherichia coli BL21 0.43 ECD_03749 5 0.63 ECD_02549 DNA recombination and repair protein; ssDNA-dependent ATPase; synaptase; ssDNA and dsDNA binding protein; ATP-dependent homologous DNA strand exchanger; recombinase A; LexA autocleavage cofactor — —
Escherichia coli ECRC102 0.43 NIAGMN_11905 polA DNA polymerase I 0.63 NIAGMN_18475 recA recombinase RecA — —
Escherichia coli ECRC100 0.43 OKFHMN_14150 polA DNA polymerase I 0.63 OKFHMN_20705 recA recombinase RecA — —
Serratia liquefaciens MT49 0.43 IAI46_24985 DNA polymerase I 0.63 IAI46_03840 recombinase RecA 0.61 23
Escherichia coli Nissle 1917 0.43 ECOLIN_RS22270 DNA polymerase I 0.63 ECOLIN_RS15060 recombinase RecA — —
Dickeya dianthicola 67-19 0.43 HGI48_RS21260 DNA polymerase I 0.64 HGI48_RS16355 recombinase RecA — —
Escherichia coli ECOR38 0.43 HEPCGN_12785 polA DNA polymerase I 0.63 HEPCGN_19900 recA recombinase RecA — —
Escherichia fergusonii Becca 0.43 EFB2_04753 DNA polymerase I 0.63 EFB2_01225 Protein RecA — —
Escherichia coli ECRC62 0.43 BNILDI_05250 polA DNA polymerase I 0.63 BNILDI_11105 recA recombinase RecA — —
Klebsiella michiganensis M5al 0.43 BWI76_RS00355 DNA polymerase I 0.62 BWI76_RS22180 recombinase RecA — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.43 OHPLBJKB_04189 DNA polymerase I 0.63 OHPLBJKB_01035 Protein RecA — —
Dickeya dianthicola ME23 0.43 DZA65_RS22235 DNA polymerase I 0.64 DZA65_RS17450 recombinase RecA — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.43 Psyr_0270 DNA polymerase I 0.65 Psyr_1378 RecA protein low > 86
Pseudomonas syringae pv. syringae B728a 0.43 Psyr_0270 DNA polymerase I 0.65 Psyr_1378 RecA protein low > 86
Pseudomonas fluorescens FW300-N1B4 0.43 Pf1N1B4_1875 DNA polymerase I (EC 2.7.7.7) 0.65 Pf1N1B4_3143 RecA protein — —
Erwinia tracheiphila SCR3 0.42 LU632_RS23870 polA DNA polymerase I 0.64 LU632_RS15735 recA recombinase RecA — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.42 GFF2216 DNA polymerase I (EC 2.7.7.7) 0.63 GFF4693 RecA protein — —
Pectobacterium carotovorum WPP14 0.42 HER17_RS21470 DNA polymerase I 0.64 HER17_RS05045 recombinase RecA — —
Rahnella sp. WP5 0.42 EX31_RS15905 DNA polymerase I 0.63 EX31_RS07800 recombinase RecA low > 89
Acinetobacter radioresistens SK82 0.39 MPMX26_00574 DNA polymerase I 0.65 MPMX26_01308 Protein RecA low > 36
Brevundimonas sp. GW460-12-10-14-LB2 0.36 A4249_RS13840 DNA polymerase I 0.65 A4249_RS12615 recombinase RecA — —
Magnetospirillum magneticum AMB-1 0.35 AMB_RS21305 DNA polymerase I 0.64 AMB_RS03205 DNA recombination/repair protein RecA — —
Caulobacter crescentus NA1000 0.35 CCNA_03577 DNA polymerase I 0.62 CCNA_01141 RecA protein 0.76 1
Azospirillum brasilense Sp245 0.35 AZOBR_RS30685 DNA polymerase 0.64 AZOBR_RS11095 recombinase RecA 0.70 12
Caulobacter crescentus NA1000 Δfur 0.35 CCNA_03577 DNA polymerase I 0.62 CCNA_01141 RecA protein — —
Agrobacterium fabrum C58 0.35 Atu0110 DNA polymerase I 0.67 Atu1874 RecA protein — —
Azospirillum sp. SherDot2 0.34 MPMX19_04869 DNA polymerase I 0.64 MPMX19_00869 Protein RecA — —
Dinoroseobacter shibae DFL-12 0.34 Dshi_2909 DNA polymerase I (RefSeq) 0.62 Dshi_1643 recA protein (RefSeq) 0.47 3
Bosea sp. OAE506 0.34 ABIE41_RS03570 DNA polymerase I 0.64 ABIE41_RS13335 recombinase RecA 0.69 7
Rhizobium sp. OAE497 0.34 ABIE40_RS00490 DNA polymerase I 0.68 ABIE40_RS10320 recombinase RecA low > 107
Phaeobacter inhibens DSM 17395 0.33 PGA1_c31780 DNA polymerase I 0.67 PGA1_c15260 protein recA (recombinase A) 0.41 8
Rhodopseudomonas palustris CGA009 0.33 TX73_024545 DNA polymerase I 0.66 TX73_019940 recombinase RecA — —
Bacteroides ovatus ATCC 8483 0.33 BACOVA_01357 DNA-directed DNA polymerase 0.57 BACOVA_05402 RecA protein low > 94
Rhodospirillum rubrum S1H 0.33 Rru_A3514 DNA polymerase A (NCBI) 0.66 Rru_A2819 RecA DNA recombination protein (NCBI) — —
Bacteroides thetaiotaomicron VPI-5482 0.32 BT3260 DNA polymerase I (NCBI ptt file) 0.56 BT4610 RecA (NCBI ptt file) 0.52 3
Pontibacter actiniarum KMM 6156, DSM 19842 0.32 CA264_16535 DNA polymerase I 0.61 CA264_19695 DNA recombination/repair protein RecA — —
Pedobacter sp. GW460-11-11-14-LB5 0.32 CA265_RS19630 DNA polymerase I 0.57 CA265_RS00600 recombinase RecA 0.41 4
Phocaeicola vulgatus CL09T03C04 0.32 HMPREF1058_RS11500 DNA polymerase I 0.58 HMPREF1058_RS15965 recombinase RecA low > 67
Bacteroides stercoris CC31F 0.32 HMPREF1181_RS02070 DNA polymerase I 0.57 HMPREF1181_RS11910 recombinase RecA low > 56
Phocaeicola dorei CL03T12C01 0.32 ABI39_RS05440 DNA polymerase I 0.58 ABI39_RS11930 recombinase RecA — —
Mucilaginibacter yixingensis YX-36 DSM 26809 0.31 ABZR88_RS20185 DNA polymerase I 0.58 ABZR88_RS16740 recombinase RecA 0.36 42
Echinicola vietnamensis KMM 6221, DSM 17526 0.31 Echvi_1032 DNA polymerase I 0.57 Echvi_0044 protein RecA low > 79
Sphingomonas koreensis DSMZ 15582 0.31 Ga0059261_2244 DNA polymerase I (EC 2.7.7.7) 0.63 Ga0059261_0204 protein RecA low > 68
Parabacteroides merdae CL09T00C40 0.31 HMPREF1078_RS06335 DNA polymerase I 0.57 HMPREF1078_RS00095 recombinase RecA low > 61
Synechococcus elongatus PCC 7942 0.27 Synpcc7942_0194 polA DNA polymerase I 0.55 Synpcc7942_0348 recA recombinase A — —
Fusobacterium nucleatum SB010 0.22 HUW76_04385 DNA polymerase I 0.49 HUW76_07355 recombinase RecA 0.92 24
Bifidobacterium breve UCC2003 0.21 BBR_RS14315 DNA polymerase I 0.60 BBR_RS16530 recombinase RecA 0.61 19

Not shown: 0 genomes with orthologs for GFF5584 only; 3 genomes with orthologs for GFF2500 only