| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Escherichia coli BL21 | 1.0 | ECD_02776 | | 16S rRNA m(3)U1498 methyltransferase, SAM-dependent | 1.0 | ECD_03118 | | tRNA-dihydrouridine synthase B | 0.76 | 7 |
| Escherichia coli ECOR38 | 1.00 | HEPCGN_18585 | | Ribosomal RNA small subunit methyltransferase E | 1.00 | HEPCGN_16505 | dusB | tRNA dihydrouridine synthase DusB | low | > 87 |
| Escherichia coli ECRC101 | 1.00 | MCAODC_09800 | rsmE | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 1.00 | MCAODC_08205 | dusB | tRNA dihydrouridine synthase DusB | low | > 87 |
| Escherichia fergusonii Becca | 1.00 | EFB2_00956 | | Ribosomal RNA small subunit methyltransferase E | 1.00 | EFB2_00564 | | tRNA-dihydrouridine synthase B | low | > 86 |
| Escherichia coli ECRC99 | 1.00 | KEDOAH_08860 | rsmE | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.90 | KEDOAH_10465 | dusB | tRNA dihydrouridine synthase DusB | — | — |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 1.00 | OHPLBJKB_00772 | | Ribosomal RNA small subunit methyltransferase E | 0.89 | OHPLBJKB_00445 | | putative tRNA-dihydrouridine synthase | low | > 73 |
| Escherichia coli ECRC98 | 1.00 | JDDGAC_22910 | rsmE | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.90 | JDDGAC_21310 | dusB | tRNA dihydrouridine synthase DusB | low | > 86 |
| Escherichia coli ECOR27 | 1.00 | NOLOHH_11150 | rsmE | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 1.00 | NOLOHH_09470 | dusB | tRNA dihydrouridine synthase DusB | low | > 75 |
| Escherichia coli BW25113 | 1.00 | b2946 | yggJ | orf, hypothetical protein (VIMSS) | 1.00 | b3260 | dusB | tRNA-dihydrouridine synthase B (NCBI) | 0.24 | 43 |
| Escherichia coli Nissle 1917 | 1.00 | ECOLIN_RS16390 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 1.00 | ECOLIN_RS18725 | | tRNA dihydrouridine synthase DusB | low | > 55 |
| Escherichia coli ECRC100 | 1.00 | OKFHMN_19280 | rsmE | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 1.00 | OKFHMN_17685 | dusB | tRNA dihydrouridine synthase DusB | low | > 80 |
| Escherichia coli ECRC102 | 1.00 | NIAGMN_17045 | rsmE | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 1.00 | NIAGMN_15445 | dusB | tRNA dihydrouridine synthase DusB | — | — |
| Escherichia coli ECRC62 | 1.00 | BNILDI_09730 | rsmE | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 1.00 | BNILDI_02050 | dusB | tRNA dihydrouridine synthase DusB | low | > 75 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.93 | GFF3048 | | Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) | 0.84 | GFF2124 | | tRNA dihydrouridine synthase B (EC 1.-.-.-) | low | > 78 |
| Enterobacter asburiae PDN3 | 0.89 | EX28DRAFT_2984 | | RNA methyltransferase, RsmE family | 0.94 | EX28DRAFT_3313 | | putative TIM-barrel protein, nifR3 family | low | > 76 |
| Enterobacter sp. TBS_079 | 0.89 | MPMX20_03804 | | Ribosomal RNA small subunit methyltransferase E | 0.96 | MPMX20_04169 | | tRNA-dihydrouridine synthase B | low | > 85 |
| Klebsiella michiganensis M5al | 0.86 | BWI76_RS24070 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.95 | BWI76_RS25565 | | tRNA dihydrouridine synthase DusB | — | — |
| Rahnella sp. WP5 | 0.85 | EX31_RS02660 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.88 | EX31_RS12180 | | tRNA dihydrouridine synthase DusB | low | > 89 |
| Serratia liquefaciens MT49 | 0.83 | IAI46_21385 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.89 | IAI46_22775 | | tRNA dihydrouridine synthase DusB | low | > 86 |
| Pantoea sp. MT58 | 0.82 | IAI47_03620 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.86 | IAI47_02385 | | tRNA dihydrouridine synthase DusB | low | > 76 |
| Dickeya dadantii 3937 | 0.81 | DDA3937_RS18555 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.90 | DDA3937_RS01375 | | tRNA dihydrouridine synthase DusB | low | > 74 |
| Dickeya dianthicola 67-19 | 0.79 | HGI48_RS18490 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.90 | HGI48_RS01295 | | tRNA dihydrouridine synthase DusB | low | > 71 |
| Dickeya dianthicola ME23 | 0.79 | DZA65_RS19625 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.90 | DZA65_RS01355 | | tRNA dihydrouridine synthase DusB | low | > 75 |
| Pectobacterium carotovorum WPP14 | 0.78 | HER17_RS02640 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.89 | HER17_RS20235 | | tRNA dihydrouridine synthase DusB | low | > 75 |
| Shewanella sp. ANA-3 | 0.68 | Shewana3_3444 | | 16S ribosomal RNA methyltransferase RsmE (RefSeq) | 0.64 | Shewana3_0399 | | nifR3 family TIM-barrel protein (RefSeq) | low | > 73 |
| Shewanella oneidensis MR-1 | 0.68 | SO0832 | | conserved hypothetical protein TIGR00046 (NCBI ptt file) | 0.64 | SO0394 | | conserved hypothetical protein (NCBI ptt file) | low | > 76 |
| Vibrio cholerae E7946 ATCC 55056 | 0.68 | CSW01_02495 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.69 | CSW01_01495 | | tRNA dihydrouridine synthase DusB | low | > 62 |
| Shewanella amazonensis SB2B | 0.66 | Sama_0575 | | 16S ribosomal RNA methyltransferase RsmE (RefSeq) | 0.67 | Sama_3225 | | tRNA-dihydrouridine synthase B (RefSeq) | 0.31 | 35 |
| Shewanella loihica PV-4 | 0.65 | Shew_3224 | | hypothetical protein (RefSeq) | 0.64 | Shew_0330 | | nifR3 family TIM-barrel protein (RefSeq) | low | > 60 |
| Marinobacter adhaerens HP15 | 0.46 | HP15_2926 | | ribosomal RNA small subunit methyltransferase E | 0.58 | HP15_3225 | | tRNA-dihydrouridine synthase B | low | > 73 |
| Alteromonas macleodii MIT1002 | 0.45 | MIT1002_03054 | | Ribosomal RNA small subunit methyltransferase E | 0.70 | MIT1002_03957 | | putative tRNA-dihydrouridine synthase | low | > 70 |
| Kangiella aquimarina DSM 16071 | 0.43 | B158DRAFT_0180 | | RNA methyltransferase, RsmE family | 0.64 | B158DRAFT_0164 | | tRNA-U20-dihydrouridine synthase | low | > 40 |
| Pseudomonas fluorescens FW300-N2E3 | 0.42 | AO353_08050 | | 16S rRNA methyltransferase | 0.55 | AO353_13660 | | tRNA-dihydrouridine synthase B | low | > 101 |
| Pseudomonas fluorescens SBW25-INTG | 0.42 | PFLU_RS28200 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.54 | PFLU_RS03025 | | tRNA dihydrouridine synthase DusB | low | > 109 |
| Pseudomonas sp. RS175 | 0.42 | PFR28_04209 | | Ribosomal RNA small subunit methyltransferase E | 0.55 | PFR28_05216 | | tRNA-dihydrouridine synthase B | low | > 88 |
| Pseudomonas fluorescens SBW25 | 0.42 | PFLU_RS28200 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.54 | PFLU_RS03025 | | tRNA dihydrouridine synthase DusB | 0.57 | 89 |
| Pseudomonas fluorescens FW300-N2E2 | 0.41 | Pf6N2E2_4630 | | Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) | 0.55 | Pf6N2E2_3517 | | tRNA dihydrouridine synthase B (EC 1.-.-.-) | low | > 103 |
| Pseudomonas putida KT2440 | 0.41 | PP_4985 | | 16S rRNA m3U1498 methyltransferase | 0.59 | PP_4820 | | tRNA-dihydrouridine synthase B | low | > 96 |
| Pseudomonas fluorescens FW300-N2C3 | 0.41 | AO356_13565 | | 16S rRNA methyltransferase | 0.55 | AO356_08215 | | tRNA-dihydrouridine synthase B | low | > 104 |
| Pseudomonas fluorescens GW456-L13 | 0.41 | PfGW456L13_1043 | | Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) | 0.55 | PfGW456L13_55 | | tRNA dihydrouridine synthase B (EC 1.-.-.-) | 0.39 | 18 |
| Pseudomonas simiae WCS417 | 0.41 | PS417_26545 | | 16S rRNA methyltransferase | 0.54 | PS417_02950 | | tRNA-dihydrouridine synthase B | low | > 88 |
| Pseudomonas fluorescens FW300-N1B4 | 0.40 | Pf1N1B4_2376 | | Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) | 0.55 | Pf1N1B4_1313 | | tRNA dihydrouridine synthase B (EC 1.-.-.-) | — | — |
| Pseudomonas stutzeri RCH2 | 0.40 | Psest_0305 | | RNA methyltransferase, RsmE family | 0.57 | Psest_1016 | | putative TIM-barrel protein, nifR3 family | low | > 67 |
| Pseudomonas syringae pv. syringae B728a | 0.40 | Psyr_0453 | | 16S rRNA m(3)U-1498 methyltransferase | 0.55 | Psyr_4404 | | tRNA-U20-dihydrouridine synthase | low | > 86 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.40 | Psyr_0453 | | 16S rRNA m(3)U-1498 methyltransferase | 0.55 | Psyr_4404 | | tRNA-U20-dihydrouridine synthase | low | > 86 |
| Pseudomonas sp. S08-1 | 0.39 | OH686_10855 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.58 | OH686_07610 | | tRNA-dihydrouridine synthase DusB | low | > 80 |
| Dyella japonica UNC79MFTsu3.2 | 0.38 | ABZR86_RS10230 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.51 | ABZR86_RS11525 | | tRNA dihydrouridine synthase DusB | low | > 74 |
| Rhodanobacter denitrificans FW104-10B01 | 0.36 | LRK54_RS04160 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.51 | LRK54_RS12140 | | tRNA dihydrouridine synthase DusB | low | > 59 |
| Acinetobacter radioresistens SK82 | 0.35 | MPMX26_01001 | | Ribosomal RNA small subunit methyltransferase E | 0.50 | MPMX26_02127 | | tRNA-dihydrouridine synthase B | low | > 36 |
| Rhodanobacter denitrificans MT42 | 0.35 | LRK55_RS03930 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.51 | LRK55_RS11875 | | tRNA dihydrouridine synthase DusB | low | > 63 |
| Lysobacter sp. OAE881 | 0.35 | ABIE51_RS05260 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.55 | ABIE51_RS16450 | | tRNA dihydrouridine synthase DusB | low | > 62 |
| Ralstonia solanacearum IBSBF1503 | 0.34 | RALBFv3_RS05880 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.55 | RALBFv3_RS11695 | | tRNA dihydrouridine synthase DusB | low | > 76 |
| Ralstonia solanacearum UW163 | 0.34 | UW163_RS07745 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.55 | UW163_RS01890 | | tRNA dihydrouridine synthase DusB | — | — |
| Burkholderia phytofirmans PsJN | 0.34 | BPHYT_RS16855 | | 16S rRNA methyltransferase | 0.52 | BPHYT_RS16585 | | tRNA-dihydrouridine synthase B | low | > 109 |
| Ralstonia solanacearum PSI07 | 0.34 | RPSI07_RS11365 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.56 | RPSI07_RS21520 | | tRNA dihydrouridine synthase DusB | low | > 81 |
| Cupriavidus basilensis FW507-4G11 | 0.33 | RR42_RS17590 | | 16S rRNA methyltransferase | 0.54 | RR42_RS02730 | | tRNA-dihydrouridine synthase B | low | > 128 |
| Rhodanobacter sp. FW510-T8 | 0.33 | OKGIIK_11035 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.51 | OKGIIK_11770 | dusB | tRNA dihydrouridine synthase DusB | low | > 52 |
| Dechlorosoma suillum PS | 0.33 | Dsui_1568 | | RNA methyltransferase, RsmE family | 0.53 | Dsui_1593 | | putative TIM-barrel protein, nifR3 family | — | — |
| Ralstonia sp. UNC404CL21Col | 0.33 | ABZR87_RS01505 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.56 | ABZR87_RS07650 | | tRNA dihydrouridine synthase DusB | low | > 80 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.33 | H281DRAFT_06311 | | 16S rRNA (uracil1498-N3)-methyltransferase | 0.54 | H281DRAFT_04249 | | tRNA-U20-dihydrouridine synthase | low | > 103 |
| Ralstonia solanacearum GMI1000 | 0.33 | RS_RS13825 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.55 | RS_RS02515 | | tRNA dihydrouridine synthase DusB | low | > 80 |
| Paraburkholderia sabiae LMG 24235 | 0.33 | QEN71_RS27020 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.53 | QEN71_RS26770 | | tRNA dihydrouridine synthase DusB | low | > 153 |
| Acidovorax sp. GW101-3H11 | 0.32 | Ac3H11_4323 | | Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) | 0.49 | Ac3H11_3996 | | tRNA dihydrouridine synthase B (EC 1.-.-.-) | low | > 79 |
| Paraburkholderia graminis OAS925 | 0.32 | ABIE53_003540 | | 16S rRNA (uracil1498-N3)-methyltransferase | 0.52 | ABIE53_003489 | | tRNA-dihydrouridine synthase B | low | > 113 |
| Variovorax sp. SCN45 | 0.30 | GFF3255 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase (EC 2.1.1.193) | 0.51 | GFF2144 | | tRNA-dihydrouridine synthase DusB | low | > 127 |
| Herbaspirillum seropedicae SmR1 | 0.29 | HSERO_RS07110 | | 16S rRNA methyltransferase | 0.52 | HSERO_RS02050 | | tRNA-dihydrouridine synthase B | low | > 78 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.29 | GFF2462 | | Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) | 0.48 | GFF634 | | tRNA dihydrouridine synthase B (EC 1.-.-.-) | low | > 90 |
| Castellaniella sp019104865 MT123 | 0.27 | ABCV34_RS15445 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.51 | ABCV34_RS07960 | | tRNA dihydrouridine synthase DusB | low | > 48 |
| Pedobacter sp. GW460-11-11-14-LB5 | 0.20 | CA265_RS23620 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.30 | CA265_RS21125 | | tRNA dihydrouridine synthase DusB | low | > 88 |
| Bacteroides thetaiotaomicron VPI-5482 | 0.20 | BT4328 | | conserved hypothetical protein (NCBI ptt file) | 0.32 | BT3073 | | putative TIM-barrel enzyme, possible dehydrogenase, contains a highly conserved dihydrouridine synthase domain (NCBI ptt file) | 0.16 | 69 |
| Phaeobacter inhibens DSM 17395 | 0.19 | PGA1_c02950 | | RNA methyltransferase-like protein | 0.36 | PGA1_c14770 | | tRNA-dihydrouridine synthase DusB | low | > 62 |
| Bacteroides ovatus ATCC 8483 | 0.19 | BACOVA_05130 | | RNA methyltransferase, RsmE family | 0.33 | BACOVA_02724 | | TIM-barrel protein, nifR3 family | low | > 94 |
| Pontibacter actiniarum KMM 6156, DSM 19842 | 0.19 | CA264_05265 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.30 | CA264_17860 | | tRNA dihydrouridine synthase DusB | low | > 74 |
| Dinoroseobacter shibae DFL-12 | 0.18 | Dshi_3099 | | protein of unknown function DUF558 (RefSeq) | 0.32 | Dshi_1576 | | putative TIM-barrel protein, nifR3 family (RefSeq) | low | > 64 |
| Parabacteroides merdae CL09T00C40 | 0.18 | HMPREF1078_RS10135 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.31 | HMPREF1078_RS05375 | | tRNA dihydrouridine synthase DusB | low | > 61 |
| Azospirillum sp. SherDot2 | 0.18 | MPMX19_00577 | | Ribosomal RNA small subunit methyltransferase E | 0.38 | MPMX19_01110 | | tRNA-dihydrouridine synthase B | low | > 112 |
| Fusobacterium nucleatum SB010 | 0.18 | HUW76_04180 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.26 | HUW76_04330 | | tRNA-dihydrouridine synthase | low | > 35 |
| Rhodopseudomonas palustris CGA009 | 0.17 | TX73_005910 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.35 | TX73_013410 | | tRNA dihydrouridine synthase DusB | low | > 86 |
| Bacteroides stercoris CC31F | 0.17 | HMPREF1181_RS05940 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.31 | HMPREF1181_RS01530 | | tRNA dihydrouridine synthase DusB | low | > 56 |
| Rhizobium sp. OAE497 | 0.17 | ABIE40_RS03520 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.35 | ABIE40_RS09080 | | tRNA dihydrouridine synthase DusB | low | > 107 |
| Echinicola vietnamensis KMM 6221, DSM 17526 | 0.17 | Echvi_3055 | | RNA methyltransferase, RsmE family | 0.29 | Echvi_1531 | | putative TIM-barrel protein, nifR3 family | low | > 79 |
| Agrobacterium fabrum C58 | 0.17 | Atu0657 | | hypothetical protein | 0.37 | Atu1444 | | nitrogen regulation protein | low | > 89 |
| Mucilaginibacter yixingensis YX-36 DSM 26809 | 0.16 | ABZR88_RS17085 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.31 | ABZR88_RS22340 | | tRNA dihydrouridine synthase DusB | low | > 71 |
| Sinorhizobium meliloti 1021 | 0.16 | SMc00826 | | 16S ribosomal RNA methyltransferase RsmE | 0.37 | SMc01041 | | NIFR3-like protein | low | > 103 |
| Sphingomonas koreensis DSMZ 15582 | 0.16 | Ga0059261_0807 | | RNA methyltransferase, RsmE family | 0.37 | Ga0059261_0140 | | tRNA-U20-dihydrouridine synthase | low | > 68 |
| Caulobacter crescentus NA1000 Δfur | 0.16 | CCNA_03528 | | RNA methyltransferase | 0.28 | CCNA_01813 | | tRNA-dihydrouridine synthase | low | > 67 |
| Caulobacter crescentus NA1000 | 0.16 | CCNA_03528 | | RNA methyltransferase | 0.28 | CCNA_01813 | | tRNA-dihydrouridine synthase | low | > 66 |
| Phocaeicola vulgatus CL09T03C04 | 0.16 | HMPREF1058_RS05940 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.32 | HMPREF1058_RS10945 | | tRNA dihydrouridine synthase DusB | low | > 67 |
| Phocaeicola dorei CL03T12C01 | 0.16 | ABI39_RS18150 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.32 | ABI39_RS06125 | | tRNA dihydrouridine synthase DusB | low | > 72 |
| Azospirillum brasilense Sp245 | 0.15 | AZOBR_RS11890 | | 16S rRNA methyltransferase | 0.38 | AZOBR_RS14420 | | tRNA-dihydrouridine synthase | low | > 97 |
| Magnetospirillum magneticum AMB-1 | 0.15 | AMB_RS01240 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.41 | AMB_RS11940 | | tRNA dihydrouridine synthase DusB | low | > 64 |
| Mycobacterium tuberculosis H37Rv | 0.15 | Rv2372c | | Conserved hypothetical protein | 0.24 | Rv0823c | | Possible transcriptional regulatory protein | 0.22 | 40 |
| Synechococcus elongatus PCC 7942 | 0.14 | Synpcc7942_0806 | | hypothetical protein | 0.26 | Synpcc7942_0283 | | Dihydrouridine synthase TIM-barrel protein nifR3 | low | > 38 |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.13 | A4249_RS00350 | | 16S rRNA (uracil(1498)-N(3))-methyltransferase | 0.32 | A4249_RS04810 | | tRNA dihydrouridine synthase DusB | — | — |
| Rhodospirillum rubrum S1H | 0.13 | Rru_A0571 | | hypothetical protein (NCBI) | 0.32 | Rru_A1676 | | Dihydrouridine synthase TIM-barrel protein nifR3 (NCBI) | low | > 58 |
Not shown: 5 genomes with orthologs for ECD_02776 only; 1 genomes with orthologs for ECD_03118 only