| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Escherichia coli BL21 | 1.0 | ECD_02630 | | 23S rRNA m(5)U1939 methyltransferase, SAM-dependent | 1.0 | ECD_00389 | | ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine protease | 0.57 | 5 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 1.00 | OHPLBJKB_00946 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 1.00 | OHPLBJKB_03235 | | ATP-dependent Clp protease ATP-binding subunit ClpX | low | > 73 |
| Escherichia coli BW25113 | 1.00 | b2785 | rumA | 23S rRNA (uracil-5-)-methyltransferase (NCBI) | 1.00 | b0438 | clpX | ATP-dependent protease ATP-binding subunit (NCBI) | low | > 76 |
| Escherichia coli ECRC62 | 0.99 | BNILDI_10625 | rlmD | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 1.00 | BNILDI_22680 | clpX | ATP-dependent protease ATP-binding subunit ClpX | 0.84 | 7 |
| Escherichia coli ECOR27 | 0.99 | NOLOHH_12120 | rlmD | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 1.00 | NOLOHH_01265 | clpX | ATP-dependent protease ATP-binding subunit ClpX | — | — |
| Escherichia coli Nissle 1917 | 0.99 | ECOLIN_RS15520 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 1.00 | ECOLIN_RS02630 | | ATP-dependent protease ATP-binding subunit ClpX | low | > 55 |
| Escherichia coli ECRC99 | 0.99 | KEDOAH_07885 | rlmD | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 1.00 | KEDOAH_19635 | clpX | ATP-dependent protease ATP-binding subunit ClpX | — | — |
| Escherichia coli ECRC100 | 0.99 | OKFHMN_20245 | rlmD | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 1.00 | OKFHMN_08330 | clpX | ATP-dependent protease ATP-binding subunit ClpX | — | — |
| Escherichia coli ECRC101 | 0.99 | MCAODC_10770 | rlmD | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 1.00 | MCAODC_27555 | clpX | ATP-dependent protease ATP-binding subunit ClpX | low | > 87 |
| Escherichia coli ECRC102 | 0.99 | NIAGMN_18015 | rlmD | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 1.00 | NIAGMN_06385 | clpX | ATP-dependent protease ATP-binding subunit ClpX | — | — |
| Escherichia coli ECRC98 | 0.99 | JDDGAC_23910 | rlmD | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 1.00 | JDDGAC_11985 | clpX | ATP-dependent protease ATP-binding subunit ClpX | low | > 86 |
| Escherichia coli ECOR38 | 0.98 | HEPCGN_19495 | rlmD | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 1.00 | HEPCGN_06945 | clpX | ATP-dependent protease ATP-binding subunit ClpX | low | > 87 |
| Escherichia fergusonii Becca | 0.98 | EFB2_01132 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 1.00 | EFB2_03619 | | ATP-dependent Clp protease ATP-binding subunit ClpX | low | > 86 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.85 | GFF4838 | | 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) | 0.98 | GFF4354 | | ATP-dependent Clp protease ATP-binding subunit ClpX | low | > 78 |
| Enterobacter asburiae PDN3 | 0.80 | EX28DRAFT_2865 | | 23S rRNA (uracil-5-)-methyltransferase RumA | 0.98 | EX28DRAFT_2533 | | endopeptidase Clp ATP-binding regulatory subunit (clpX) | — | — |
| Enterobacter sp. TBS_079 | 0.80 | MPMX20_03654 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.98 | MPMX20_01029 | | ATP-dependent Clp protease ATP-binding subunit ClpX | low | > 85 |
| Klebsiella michiganensis M5al | 0.79 | BWI76_RS22810 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase | 0.98 | BWI76_RS06530 | | ATP-dependent Clp protease ATP-binding subunit ClpX | low | > 92 |
| Dickeya dianthicola ME23 | 0.66 | DZA65_RS18150 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.92 | DZA65_RS06015 | | ATP-dependent protease ATP-binding subunit ClpX | — | — |
| Dickeya dianthicola 67-19 | 0.66 | HGI48_RS17075 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.92 | HGI48_RS05690 | | ATP-dependent protease ATP-binding subunit ClpX | low | > 71 |
| Dickeya dadantii 3937 | 0.65 | DDA3937_RS17020 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.93 | DDA3937_RS05645 | | ATP-dependent protease ATP-binding subunit ClpX | low | > 74 |
| Pectobacterium carotovorum WPP14 | 0.64 | HER17_RS04110 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.94 | HER17_RS15845 | | ATP-dependent protease ATP-binding subunit ClpX | — | — |
| Pantoea sp. MT58 | 0.64 | IAI47_04115 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.95 | IAI47_14650 | | ATP-dependent protease ATP-binding subunit ClpX | — | — |
| Serratia liquefaciens MT49 | 0.63 | IAI46_03595 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.94 | IAI46_05015 | | ATP-dependent protease ATP-binding subunit ClpX | low | > 86 |
| Rahnella sp. WP5 | 0.62 | EX31_RS07960 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.95 | EX31_RS22250 | | ATP-dependent protease ATP-binding subunit ClpX | 0.60 | 32 |
| Erwinia tracheiphila SCR3 | 0.59 | LU632_RS06345 | rlmD | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.95 | LU632_RS18340 | clpX | ATP-dependent protease ATP-binding subunit ClpX | — | — |
| Vibrio cholerae E7946 ATCC 55056 | 0.46 | CSW01_12410 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.84 | CSW01_09610 | | ATP-dependent Clp protease ATP-binding subunit ClpX | — | — |
| Shewanella amazonensis SB2B | 0.45 | Sama_1032 | rumA | 23S rRNA 5-methyluridine methyltransferase (RefSeq) | 0.83 | Sama_1225 | clpX | ATP-dependent protease ATP-binding subunit ClpX (RefSeq) | low | > 62 |
| Shewanella loihica PV-4 | 0.44 | Shew_1201 | rumA | 23S rRNA 5-methyluridine methyltransferase (RefSeq) | 0.82 | Shew_2507 | clpX | ATP-dependent protease ATP-binding subunit (RefSeq) | — | — |
| Shewanella sp. ANA-3 | 0.43 | Shewana3_1110 | rumA | 23S rRNA 5-methyluridine methyltransferase (RefSeq) | 0.84 | Shewana3_2660 | clpX | ATP-dependent protease ATP-binding subunit ClpX (RefSeq) | low | > 73 |
| Shewanella oneidensis MR-1 | 0.43 | SO3456 | | RNA methyltransferase, TrmA family (NCBI ptt file) | 0.83 | SO1795 | clpX | ATP-dependent Clp protease, ATP-binding subunit ClpX (NCBI ptt file) | low | > 76 |
| Kangiella aquimarina DSM 16071 | 0.37 | B158DRAFT_2275 | | 23S rRNA (uracil-5-)-methyltransferase RumA | 0.74 | B158DRAFT_1037 | | endopeptidase Clp ATP-binding regulatory subunit (clpX) | low | > 40 |
| Marinobacter adhaerens HP15 | 0.36 | HP15_790 | | 23S rRNA 5-methyluridine methyltransferase | 0.77 | HP15_2184 | | ATP-dependent Clp protease ATP-binding subunit ClpX | — | — |
| Pseudomonas stutzeri RCH2 | 0.36 | Psest_1639 | | 23S rRNA (uracil-5-)-methyltransferase RumA | 0.76 | Psest_2286 | | endopeptidase Clp ATP-binding regulatory subunit (clpX) | — | — |
| Lysobacter sp. OAE881 | 0.36 | ABIE51_RS13830 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.74 | ABIE51_RS14150 | | ATP-dependent Clp protease ATP-binding subunit ClpX | low | > 62 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.35 | Xcc-8004.3669.1 | | 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) | 0.75 | Xcc-8004.4047.1 | | ATP-dependent Clp protease ATP-binding subunit ClpX | — | — |
| Dyella japonica UNC79MFTsu3.2 | 0.35 | ABZR86_RS07120 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.75 | ABZR86_RS07325 | | ATP-dependent Clp protease ATP-binding subunit ClpX | — | — |
| Rhodanobacter denitrificans MT42 | 0.35 | LRK55_RS16715 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.74 | LRK55_RS16455 | | ATP-dependent Clp protease ATP-binding subunit ClpX | low | > 63 |
| Castellaniella sp019104865 MT123 | 0.35 | ABCV34_RS03050 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.69 | ABCV34_RS05130 | | ATP-dependent Clp protease ATP-binding subunit ClpX | — | — |
| Rhodanobacter denitrificans FW104-10B01 | 0.35 | LRK54_RS17000 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.74 | LRK54_RS16730 | | ATP-dependent Clp protease ATP-binding subunit ClpX | low | > 59 |
| Acinetobacter radioresistens SK82 | 0.34 | MPMX26_00538 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.67 | MPMX26_00409 | | ATP-dependent Clp protease ATP-binding subunit ClpX | low | > 36 |
| Rhodanobacter sp. FW510-T8 | 0.34 | OKGIIK_07840 | rlmD | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.74 | OKGIIK_08035 | clpX | ATP-dependent Clp protease ATP-binding subunit ClpX | — | — |
| Pseudomonas simiae WCS417 | 0.34 | PS417_20155 | | 23S rRNA methyltransferase | 0.75 | PS417_17230 | | Clp protease ATP-binding protein | — | — |
| Pseudomonas sp. S08-1 | 0.33 | OH686_18955 | | 23S rRNA (uracil-5-)-methyltransferase RumA | 0.75 | OH686_03640 | | ATP-dependent Clp protease, ATP-binding subunit ClpX | low | > 80 |
| Pseudomonas fluorescens SBW25-INTG | 0.33 | PFLU_RS22100 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.75 | PFLU_RS19165 | | ATP-dependent Clp protease ATP-binding subunit ClpX | low | > 109 |
| Pseudomonas fluorescens SBW25 | 0.33 | PFLU_RS22100 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.75 | PFLU_RS19165 | | ATP-dependent Clp protease ATP-binding subunit ClpX | low | > 109 |
| Pseudomonas syringae pv. syringae B728a | 0.32 | Psyr_3696 | | 23S rRNA m(5)U-1939 methyltransferase | 0.76 | Psyr_1748 | | ATP-dependent Clp protease ATP-binding subunit ClpX | low | > 86 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.32 | Psyr_3696 | | 23S rRNA m(5)U-1939 methyltransferase | 0.76 | Psyr_1748 | | ATP-dependent Clp protease ATP-binding subunit ClpX | low | > 86 |
| Pseudomonas fluorescens FW300-N1B4 | 0.32 | Pf1N1B4_3507 | | 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 | 0.75 | Pf1N1B4_3946 | | ATP-dependent Clp protease ATP-binding subunit ClpX | — | — |
| Pseudomonas sp. RS175 | 0.32 | PFR28_03224 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.76 | PFR28_01229 | | ATP-dependent Clp protease ATP-binding subunit ClpX | — | — |
| Dechlorosoma suillum PS | 0.32 | Dsui_1981 | | 23S rRNA (uracil-5-)-methyltransferase RumA | 0.73 | Dsui_2197 | | endopeptidase Clp ATP-binding regulatory subunit ClpX | low | > 51 |
| Pseudomonas fluorescens FW300-N2C3 | 0.32 | AO356_19055 | | 23S rRNA methyltransferase | 0.75 | AO356_01745 | | ATP-dependent Clp protease ATP-binding subunit ClpX | 0.24 | 87 |
| Acidovorax sp. GW101-3H11 | 0.31 | Ac3H11_2847 | | 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) | 0.72 | Ac3H11_936 | | ATP-dependent Clp protease ATP-binding subunit ClpX | — | — |
| Pseudomonas fluorescens FW300-N2E2 | 0.31 | Pf6N2E2_5722 | | 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 | 0.75 | Pf6N2E2_2217 | | ATP-dependent Clp protease ATP-binding subunit ClpX | low | > 103 |
| Ralstonia sp. UNC404CL21Col | 0.31 | ABZR87_RS10885 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.71 | ABZR87_RS12790 | | ATP-dependent Clp protease ATP-binding subunit ClpX | low | > 80 |
| Herbaspirillum seropedicae SmR1 | 0.31 | HSERO_RS14825 | | 23S rRNA methyltransferase | 0.70 | HSERO_RS12910 | | ATP-dependent protease | — | — |
| Burkholderia phytofirmans PsJN | 0.31 | BPHYT_RS09125 | | 23S rRNA methyltransferase | 0.72 | BPHYT_RS09455 | | ATP-dependent Clp protease ATP-binding subunit ClpX | — | — |
| Alteromonas macleodii MIT1002 | 0.31 | MIT1002_00793 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.84 | MIT1002_02759 | | ATP-dependent Clp protease ATP-binding subunit ClpX | low | > 70 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.31 | H281DRAFT_00846 | | 23S rRNA m(5)U-1939 methyltransferase | 0.72 | H281DRAFT_00897 | | ATP-dependent Clp protease ATP-binding subunit ClpX | — | — |
| Cupriavidus basilensis FW507-4G11 | 0.31 | RR42_RS13170 | | 23S rRNA methyltransferase | 0.71 | RR42_RS09025 | | Clp protease ATP-binding protein | — | — |
| Ralstonia solanacearum GMI1000 | 0.31 | RS_RS06055 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.72 | RS_RS08650 | | ATP-dependent Clp protease ATP-binding subunit ClpX | low | > 80 |
| Pseudomonas putida KT2440 | 0.30 | PP_1655 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.76 | PP_2301 | | ATP-dependent Clp protease ATP-binding subunit ClpX | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.30 | RALBFv3_RS15245 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.71 | RALBFv3_RS01345 | | ATP-dependent Clp protease ATP-binding subunit ClpX | — | — |
| Pseudomonas fluorescens FW300-N2E3 | 0.30 | AO353_02715 | | 23S rRNA methyltransferase | 0.75 | AO353_20180 | | ATP-dependent Clp protease ATP-binding subunit ClpX | — | — |
| Ralstonia solanacearum UW163 | 0.30 | UW163_RS12710 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.71 | UW163_RS14655 | | ATP-dependent Clp protease ATP-binding subunit ClpX | — | — |
| Ralstonia solanacearum PSI07 | 0.30 | RPSI07_RS18130 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.71 | RPSI07_RS16130 | | ATP-dependent Clp protease ATP-binding subunit ClpX | low | > 81 |
| Pseudomonas fluorescens GW456-L13 | 0.30 | PfGW456L13_2033 | | 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 | 0.75 | PfGW456L13_2553 | | ATP-dependent Clp protease ATP-binding subunit ClpX | low | > 87 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.30 | GFF3883 | | 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) | 0.70 | GFF4043 | | ATP-dependent Clp protease ATP-binding subunit ClpX | low | > 90 |
| Paraburkholderia sabiae LMG 24235 | 0.29 | QEN71_RS22225 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.72 | QEN71_RS21980 | | ATP-dependent Clp protease ATP-binding subunit ClpX | low | > 153 |
| Variovorax sp. SCN45 | 0.28 | GFF2841 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase (EC 2.1.1.190) | 0.72 | GFF488 | | ATP-dependent Clp protease ATP-binding subunit ClpX | low | > 127 |
| Synechococcus elongatus PCC 7942 | 0.21 | Synpcc7942_0241 | rumA | 23S rRNA (uracil-5-)-methyltransferase RumA | 0.58 | Synpcc7942_2526 | clpX | ATP-dependent protease ATP-binding subunit | low | > 38 |
| Pontibacter actiniarum KMM 6156, DSM 19842 | 0.19 | CA264_02005 | | 23S rRNA (uracil-5-)-methyltransferase RumA | 0.50 | CA264_01405 | | ATP-dependent Clp protease ATP-binding subunit ClpX | low | > 74 |
| Mucilaginibacter yixingensis YX-36 DSM 26809 | 0.19 | ABZR88_RS21250 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.51 | ABZR88_RS06965 | | ATP-dependent Clp protease ATP-binding subunit ClpX | low | > 71 |
| Pedobacter sp. GW460-11-11-14-LB5 | 0.19 | CA265_RS25340 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.50 | CA265_RS04275 | | ATP-dependent protease ATP-binding subunit ClpX | low | > 88 |
| Parabacteroides merdae CL09T00C40 | 0.19 | HMPREF1078_RS02375 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.49 | HMPREF1078_RS17045 | | ATP-dependent Clp protease ATP-binding subunit ClpX | low | > 61 |
| Phocaeicola vulgatus CL09T03C04 | 0.19 | HMPREF1058_RS03720 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.48 | HMPREF1058_RS03080 | | ATP-dependent Clp protease ATP-binding subunit ClpX | low | > 67 |
| Phocaeicola dorei CL03T12C01 | 0.18 | ABI39_RS17490 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.48 | ABI39_RS02325 | | ATP-dependent Clp protease ATP-binding subunit ClpX | — | — |
| Echinicola vietnamensis KMM 6221, DSM 17526 | 0.18 | Echvi_0172 | | 23S rRNA (uracil-5-)-methyltransferase RumA | 0.49 | Echvi_4635 | | endopeptidase Clp ATP-binding regulatory subunit (clpX) | — | — |
| Desulfovibrio vulgaris Hildenborough JW710 | 0.18 | DVU0924 | rumA | 23S rRNA (uracil-5-)-methyltransferase RumA (TIGR) | 0.60 | DVU1336 | clpX | ATP-dependent Clp protease, ATP-binding subunit ClpX (TIGR) | low | > 55 |
| Bacteroides ovatus ATCC 8483 | 0.18 | BACOVA_02267 | | 23S rRNA (uracil-5-)-methyltransferase RumA | 0.49 | BACOVA_00336 | | ATP-dependent Clp protease, ATP-binding subunit ClpX | low | > 94 |
| Magnetospirillum magneticum AMB-1 | 0.17 | AMB_RS01660 | | class I SAM-dependent RNA methyltransferase | 0.69 | AMB_RS14040 | | ATP-dependent Clp protease ATP-binding subunit ClpX | — | — |
| Bacteroides thetaiotaomicron VPI-5482 | 0.17 | BT0643 | | RNA methyltransferase (NCBI ptt file) | 0.49 | BT3843 | | ATP-dependent Clp protease ATP-binding subunit (NCBI ptt file) | low | > 81 |
| Fusobacterium nucleatum SB010 | 0.17 | HUW76_01255 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.56 | HUW76_01060 | | ATP-dependent Clp protease ATP-binding subunit ClpX | low | > 35 |
| Azospirillum brasilense Sp245 | 0.16 | AZOBR_RS01195 | | RNA methyltransferase | 0.69 | AZOBR_RS07140 | | ATP-dependent protease | — | — |
| Caulobacter crescentus NA1000 | 0.16 | CCNA_01387 | | tRNA (uracil-5-)-methyltransferase related protein | 0.67 | CCNA_02039 | | ATP-dependent endopeptidase clp, ATP-binding subunit ClpX | — | — |
| Caulobacter crescentus NA1000 Δfur | 0.16 | CCNA_01387 | | tRNA (uracil-5-)-methyltransferase related protein | 0.67 | CCNA_02039 | | ATP-dependent endopeptidase clp, ATP-binding subunit ClpX | — | — |
| Azospirillum sp. SherDot2 | 0.16 | MPMX19_02196 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.69 | MPMX19_01547 | | ATP-dependent Clp protease ATP-binding subunit ClpX | — | — |
| Rhodopseudomonas palustris CGA009 | 0.15 | TX73_004885 | | methyltransferase | 0.69 | TX73_015350 | | ATP-dependent Clp protease ATP-binding subunit ClpX | — | — |
| Rhizobium sp. OAE497 | 0.15 | ABIE40_RS03880 | | class I SAM-dependent RNA methyltransferase | 0.69 | ABIE40_RS07095 | | ATP-dependent Clp protease ATP-binding subunit ClpX | — | — |
| Dinoroseobacter shibae DFL-12 | 0.15 | Dshi_3492 | | (Uracil-5)-methyltransferase (RefSeq) | 0.66 | Dshi_1387 | | ATP-dependent Clp protease, ATP-binding subunit ClpX (RefSeq) | low | > 64 |
| Sinorhizobium meliloti 1021 | 0.14 | SMc00974 | | RNA methyltransferase | 0.69 | SMc01904 | | ATP-dependent protease ATP-binding subunit ClpX | — | — |
| Agrobacterium fabrum C58 | 0.14 | Atu0735 | | RNA methyltransferase | 0.69 | Atu1259 | | ATP-dependent Clp protease, ATP-binding subunit | — | — |
| Phaeobacter inhibens DSM 17395 | 0.14 | PGA1_c34810 | | putative RNA methyltransferase | 0.68 | PGA1_c12530 | | ATP-dependent Clp protease ATP-binding subunit ClpX | low | > 62 |
| Sphingomonas koreensis DSMZ 15582 | 0.14 | Ga0059261_0648 | | SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase | 0.70 | Ga0059261_0096 | | endopeptidase Clp ATP-binding regulatory subunit (clpX) | — | — |
| Bosea sp. OAE506 | 0.14 | ABIE41_RS22255 | | RNA methyltransferase | 0.70 | ABIE41_RS18055 | | ATP-dependent Clp protease ATP-binding subunit ClpX | — | — |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.13 | A4249_RS08425 | | class I SAM-dependent RNA methyltransferase | 0.68 | A4249_RS06475 | | ATP-dependent Clp protease ATP-binding subunit ClpX | — | — |
| Rhodospirillum rubrum S1H | 0.12 | Rru_A2107 | | 23S rRNA (uracil-5-)-methyltransferase RumA (NCBI) | 0.67 | Rru_A1551 | | ClpX, ATPase regulatory subunit (NCBI) | — | — |
Not shown: 1 genomes with orthologs for ECD_02630 only; 5 genomes with orthologs for ECD_00389 only