Conservation of cofitness between Dsui_1622 and Dsui_1227 in Dechlorosoma suillum PS

94 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Dechlorosoma suillum PS 1.0 Dsui_1622 excinuclease ABC, A subunit 1.0 Dsui_1227 DNA/RNA helicase, superfamily I 0.87 10
Ralstonia sp. UNC404CL21Col 0.79 ABZR87_RS07120 excinuclease ABC subunit UvrA 0.62 ABZR87_RS15705 UvrD-helicase domain-containing protein low > 80
Ralstonia solanacearum IBSBF1503 0.78 RALBFv3_RS11235 excinuclease ABC subunit UvrA 0.61 RALBFv3_RS03775 DNA-dependent helicase — —
Ralstonia solanacearum UW163 0.78 UW163_RS02345 excinuclease ABC subunit UvrA 0.61 UW163_RS09895 DNA-dependent helicase — —
Ralstonia solanacearum GMI1000 0.78 RS_RS02080 excinuclease ABC subunit UvrA 0.61 RS_RS11220 DNA-dependent helicase low > 80
Ralstonia solanacearum PSI07 0.78 RPSI07_RS22065 excinuclease ABC subunit UvrA 0.62 RPSI07_RS13455 DNA-dependent helicase — —
Paraburkholderia sabiae LMG 24235 0.77 QEN71_RS01825 excinuclease ABC subunit UvrA 0.62 QEN71_RS05110 3'-5' exonuclease — —
Herbaspirillum seropedicae SmR1 0.77 HSERO_RS19810 excinuclease ABC subunit A 0.62 HSERO_RS02160 DNA-dependent helicase 0.39 45
Burkholderia phytofirmans PsJN 0.77 BPHYT_RS02970 excinuclease ABC subunit A 0.63 BPHYT_RS13840 DNA-dependent helicase — —
Paraburkholderia bryophila 376MFSha3.1 0.77 H281DRAFT_01913 Excinuclease ABC subunit A 0.63 H281DRAFT_04469 ATP-dependent DNA helicase UvrD — —
Paraburkholderia graminis OAS925 0.77 ABIE53_000732 excinuclease ABC subunit A 0.63 ABIE53_002936 DNA helicase-2/ATP-dependent DNA helicase PcrA — —
Cupriavidus basilensis FW507-4G11 0.77 RR42_RS02145 excinuclease ABC subunit A 0.62 RR42_RS15090 DNA helicase 0.53 10
Pseudomonas putida KT2440 0.75 PP_0483 excinuclease (uvrABC system protein A) 0.44 PP_5352 DNA-dependent ATPase I and helicase II, nucleotide Excision Repair Complex — —
Pseudomonas stutzeri RCH2 0.75 Psest_3576 excinuclease ABC, A subunit 0.44 Psest_4098 Superfamily I DNA and RNA helicases 0.32 21
Pseudomonas fluorescens FW300-N2E3 0.75 AO353_06855 ABC-ATPase UvrA 0.44 AO353_10055 DNA helicase II 0.51 16
Pseudomonas sp. S08-1 0.75 OH686_15495 excinuclease ABC subunit A 0.42 OH686_13045 ATP-dependent DNA helicase UvrD/PcrA low > 80
Pseudomonas syringae pv. syringae B728a ΔmexB 0.75 Psyr_4520 Excinuclease ABC subunit A 0.44 Psyr_5065 ATP-dependent DNA helicase UvrD 0.26 37
Pseudomonas fluorescens GW456-L13 0.75 PfGW456L13_1283 Excinuclease ABC subunit A 0.44 PfGW456L13_724 ATP-dependent DNA helicase UvrD/PcrA 0.61 2
Pseudomonas syringae pv. syringae B728a 0.75 Psyr_4520 Excinuclease ABC subunit A 0.44 Psyr_5065 ATP-dependent DNA helicase UvrD 0.18 79
Pseudomonas fluorescens SBW25 0.75 PFLU_RS27025 excinuclease ABC subunit UvrA 0.44 PFLU_RS29900 DNA helicase II low > 109
Pseudomonas fluorescens SBW25-INTG 0.75 PFLU_RS27025 excinuclease ABC subunit UvrA 0.44 PFLU_RS29900 DNA helicase II low > 109
Pseudomonas sp. RS175 0.75 PFR28_03974 UvrABC system protein A 0.44 PFR28_04523 DNA helicase II low > 88
Pseudomonas fluorescens FW300-N1B4 0.74 Pf1N1B4_2611 Excinuclease ABC subunit A 0.43 Pf1N1B4_2005 ATP-dependent DNA helicase UvrD/PcrA 0.46 11
Pseudomonas fluorescens FW300-N2C3 0.74 AO356_14785 ABC-ATPase UvrA 0.44 AO356_11990 DNA helicase II 0.68 9
Pseudomonas fluorescens FW300-N2E2 0.74 Pf6N2E2_4888 Excinuclease ABC subunit A 0.44 Pf6N2E2_4273 ATP-dependent DNA helicase UvrD/PcrA 0.61 9
Pectobacterium carotovorum WPP14 0.73 HER17_RS03550 excinuclease ABC subunit UvrA 0.45 HER17_RS01360 DNA helicase II low > 75
Marinobacter adhaerens HP15 0.72 HP15_406 excinuclease ABC, ATPase subunit (A) 0.43 HP15_3403 UvrD/REP helicase 0.69 13
Enterobacter asburiae PDN3 0.72 EX28DRAFT_4246 excinuclease ABC, A subunit 0.45 EX28DRAFT_4482 ATP-dependent DNA helicase UvrD (EC 3.6.1.-) low > 76
Dickeya dianthicola 67-19 0.72 HGI48_RS17610 excinuclease ABC subunit UvrA 0.45 HGI48_RS20035 DNA helicase II low > 71
Pantoea sp. MT58 0.72 IAI47_17815 excinuclease ABC subunit UvrA 0.44 IAI47_18390 DNA helicase II low > 76
Dickeya dianthicola ME23 0.72 DZA65_RS18735 excinuclease ABC subunit UvrA 0.45 DZA65_RS21080 DNA helicase II low > 75
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.72 GFF1429 Excinuclease ABC subunit A 0.45 GFF241 ATP-dependent DNA helicase UvrD/PcrA 0.66 8
Rahnella sp. WP5 0.72 EX31_RS11990 excinuclease ABC subunit UvrA 0.44 EX31_RS15175 DNA helicase II low > 89
Escherichia coli Nissle 1917 0.72 ECOLIN_RS23485 excinuclease ABC subunit UvrA 0.45 ECOLIN_RS21885 DNA helicase II low > 52
Dickeya dadantii 3937 0.72 DDA3937_RS17605 excinuclease ABC subunit UvrA 0.45 DDA3937_RS19880 DNA helicase II low > 74
Serratia liquefaciens MT49 0.72 IAI46_22905 excinuclease ABC subunit UvrA 0.44 IAI46_00735 DNA helicase II low > 86
Escherichia coli ECRC101 0.72 MCAODC_03405 uvrA excinuclease ABC subunit UvrA 0.45 MCAODC_04915 uvrD DNA helicase II — —
Enterobacter sp. TBS_079 0.72 MPMX20_00276 UvrABC system protein A 0.45 MPMX20_04463 DNA helicase II low > 85
Escherichia coli ECRC102 0.72 NIAGMN_10740 uvrA excinuclease ABC subunit UvrA 0.45 NIAGMN_12165 uvrD DNA helicase II — —
Escherichia fergusonii Becca 0.72 EFB2_04533 UvrABC system protein A 0.45 EFB2_04824 DNA helicase II low > 86
Escherichia coli ECRC98 0.72 JDDGAC_16530 uvrA excinuclease ABC subunit UvrA 0.45 JDDGAC_18035 uvrD DNA helicase II — —
Escherichia coli ECRC99 0.72 KEDOAH_15255 uvrA excinuclease ABC subunit UvrA 0.45 KEDOAH_13740 uvrD DNA helicase II — —
Escherichia coli BW25113 0.72 b4058 uvrA excinuclease ABC subunit A (NCBI) 0.45 b3813 uvrD DNA-dependent ATPase I and helicase II (NCBI) 0.63 6
Escherichia coli HS(pFamp)R (ATCC 700891) 0.72 OHPLBJKB_03983 UvrABC system protein A 0.45 OHPLBJKB_04237 DNA helicase II low > 73
Escherichia coli ECRC62 0.72 BNILDI_06380 uvrA excinuclease ABC subunit UvrA 0.45 BNILDI_04995 uvrD DNA helicase II — —
Escherichia coli ECOR27 0.72 NOLOHH_05145 uvrA excinuclease ABC subunit UvrA 0.45 NOLOHH_06540 uvrD DNA helicase II low > 57
Escherichia coli ECRC101 0.72 OKFHMN_12895 uvrA excinuclease ABC subunit UvrA 0.45 OKFHMN_14410 uvrD DNA helicase II — —
Escherichia coli ECOR38 0.72 HEPCGN_11510 uvrA excinuclease ABC subunit UvrA 0.45 HEPCGN_13115 uvrD DNA helicase II low > 85
Kangiella aquimarina DSM 16071 0.72 B158DRAFT_0885 excinuclease ABC, A subunit 0.47 B158DRAFT_0238 Superfamily I DNA and RNA helicases 0.70 7
Escherichia coli BL21 0.72 ECD_03930 ATPase and DNA damage recognition protein of nucleotide excision repair excinuclease UvrABC 0.45 ECD_03689 DNA-dependent ATPase I and helicase II — —
Klebsiella michiganensis M5al 0.71 BWI76_RS01950 excinuclease ABC subunit A 0.45 BWI76_RS01220 DNA-dependent helicase II low > 92
Erwinia tracheiphila SCR3 0.71 LU632_RS23685 uvrA excinuclease ABC subunit UvrA 0.45 LU632_RS24125 uvrD DNA helicase II — —
Vibrio cholerae E7946 ATCC 55056 0.71 CSW01_02080 UvrABC system protein A 0.45 CSW01_01015 DNA helicase II 0.51 9
Xanthomonas campestris pv. campestris strain 8004 0.71 Xcc-8004.3830.1 Excinuclease ABC subunit A 0.45 Xcc-8004.5114.1 ATP-dependent DNA helicase UvrD/PcrA 0.39 20
Shewanella oneidensis MR-1 0.71 SO4030 uvrA excinuclease ABC, A subunit (NCBI ptt file) 0.45 SO0467 uvrD DNA helicase II (NCBI ptt file) 0.48 9
Shewanella sp. ANA-3 0.71 Shewana3_3592 excinuclease ABC subunit A (RefSeq) 0.45 Shewana3_0469 uvrD DNA-dependent helicase II (RefSeq) 0.52 14
Alteromonas macleodii MIT1002 0.70 MIT1002_00179 Excinuclease ABC subunit A 0.46 MIT1002_00153 DNA helicase II low > 70
Shewanella amazonensis SB2B 0.70 Sama_0514 excinuclease ABC, A subunit (RefSeq) 0.45 Sama_0419 uvrD DNA-dependent helicase II (RefSeq) 0.41 21
Dyella japonica UNC79MFTsu3.2 0.70 ABZR86_RS00910 excinuclease ABC subunit UvrA 0.44 ABZR86_RS16965 DNA helicase II 0.90 5
Variovorax sp. SCN45 0.70 GFF4944 Excinuclease ABC subunit A 0.60 GFF4000 ATP-dependent DNA helicase UvrD/PcrA (EC 3.6.4.12) low > 127
Shewanella loihica PV-4 0.70 Shew_0533 excinuclease ABC, A subunit (RefSeq) 0.44 Shew_3385 uvrD DNA-dependent helicase II (RefSeq) 0.68 18
Variovorax sp. OAS795 0.70 ABID97_RS04340 excinuclease ABC subunit UvrA 0.61 ABID97_RS09150 UvrD-helicase domain-containing protein 0.34 70
Hydrogenophaga sp. GW460-11-11-14-LB1 0.70 GFF2755 Excinuclease ABC subunit A 0.61 GFF5598 ATP-dependent DNA helicase UvrD/PcrA — —
Rhodanobacter denitrificans FW104-10B01 0.69 LRK54_RS15210 excinuclease ABC subunit UvrA 0.44 LRK54_RS06850 DNA helicase II 0.48 9
Rhodanobacter denitrificans MT42 0.69 LRK55_RS14925 excinuclease ABC subunit UvrA 0.44 LRK55_RS06595 DNA helicase II — —
Rhodanobacter sp. FW510-T8 0.69 OKGIIK_03980 uvrA excinuclease ABC subunit UvrA 0.43 OKGIIK_16775 DNA helicase low > 52
Acidovorax sp. GW101-3H11 0.69 Ac3H11_4387 Excinuclease ABC subunit A 0.61 Ac3H11_1660 ATP-dependent DNA helicase UvrD/PcrA low > 79
Castellaniella sp019104865 MT123 0.65 ABCV34_RS12715 excinuclease ABC subunit UvrA 0.59 ABCV34_RS05210 UvrD-helicase domain-containing protein low > 48
Azospirillum sp. SherDot2 0.62 MPMX19_01152 UvrABC system protein A 0.31 MPMX19_01610 ATP-dependent DNA helicase PcrA low > 112
Rhodospirillum rubrum S1H 0.62 Rru_A1752 Excinuclease ABC, A subunit (NCBI) 0.31 Rru_A1536 UvrD/REP helicase (NCBI) 0.56 39
Dinoroseobacter shibae DFL-12 0.61 Dshi_1809 excinuclease ABC, A subunit (RefSeq) 0.30 Dshi_2483 UvrD/REP helicase (RefSeq) — —
Azospirillum brasilense Sp245 0.61 AZOBR_RS15370 excinuclease ABC subunit A 0.32 AZOBR_RS12445 DNA helicase II 0.55 17
Agrobacterium fabrum C58 0.61 Atu1513 ABC excinuclease subunit A 0.30 Atu2057 DNA helicase II 0.67 3
Sinorhizobium meliloti 1021 0.60 SMc01235 excinuclease ABC subunit A 0.30 SMc01461 DNA helicase II protein 0.82 3
Brevundimonas sp. GW460-12-10-14-LB2 0.60 A4249_RS08575 excinuclease ABC subunit UvrA 0.30 A4249_RS04960 UvrD-helicase domain-containing protein low > 48
Rhizobium sp. OAE497 0.60 ABIE40_RS09360 excinuclease ABC subunit UvrA 0.31 ABIE40_RS11670 UvrD-helicase domain-containing protein low > 107
Magnetospirillum magneticum AMB-1 0.60 AMB_RS12410 excinuclease ABC subunit UvrA 0.30 AMB_RS03725 DNA helicase II low > 64
Bosea sp. OAE506 0.60 ABIE41_RS15100 excinuclease ABC subunit UvrA 0.30 ABIE41_RS12730 UvrD-helicase domain-containing protein 0.40 47
Sphingomonas koreensis DSMZ 15582 0.59 Ga0059261_0674 excinuclease ABC, A subunit 0.30 Ga0059261_0249 Superfamily I DNA and RNA helicases 0.95 2
Phaeobacter inhibens DSM 17395 0.59 PGA1_c17370 uvrABC system protein A 0.31 PGA1_c09450 DNA helicase II UvrD 0.50 12
Mycobacterium tuberculosis H37Rv 0.57 Rv1638 Probable excinuclease ABC (subunit A-DNA-binding ATPase) UvrA 0.32 Rv0949 Probable ATP-dependent DNA helicase II UvrD1 low > 58
Synechococcus elongatus PCC 7942 0.54 Synpcc7942_0848 uvrA excinuclease ABC subunit A 0.30 Synpcc7942_2168 pcrA ATP-dependent DNA helicase, Rep family low > 38
Fusobacterium nucleatum SB010 0.53 HUW76_06660 excinuclease ABC subunit UvrA 0.28 HUW76_07175 UvrD-helicase domain-containing protein low > 35
Pontibacter actiniarum KMM 6156, DSM 19842 0.53 CA264_18100 ABC-ATPase UvrA 0.31 CA264_07795 ATP-dependent DNA helicase — —
Echinicola vietnamensis KMM 6221, DSM 17526 0.52 Echvi_1138 excinuclease ABC, A subunit 0.32 Echvi_0292 Superfamily I DNA and RNA helicases — —
Bacteroides ovatus ATCC 8483 0.51 BACOVA_03703 excinuclease ABC, A subunit 0.28 BACOVA_02365 UvrD/REP helicase — —
Bacteroides thetaiotaomicron VPI-5482 0.51 BT0578 excinuclease ABC subunit A (NCBI ptt file) 0.29 BT0657 ATP-dependent DNA helicase (NCBI ptt file) — —
Pedobacter sp. GW460-11-11-14-LB5 0.51 CA265_RS25080 excinuclease ABC subunit A 0.30 CA265_RS12980 ATP-dependent DNA helicase — —
Parabacteroides merdae CL09T00C40 0.51 HMPREF1078_RS00835 excinuclease ABC subunit UvrA 0.29 HMPREF1078_RS03560 3'-5' exonuclease low > 61
Phocaeicola dorei CL03T12C01 0.51 ABI39_RS15330 excinuclease ABC subunit UvrA 0.29 ABI39_RS17735 UvrD-helicase domain-containing protein — —
Phocaeicola vulgatus CL09T03C04 0.50 HMPREF1058_RS01735 excinuclease ABC subunit UvrA 0.29 HMPREF1058_RS03305 UvrD-helicase domain-containing protein 0.75 17
Bacteroides stercoris CC31F 0.50 HMPREF1181_RS15185 excinuclease ABC subunit UvrA 0.27 HMPREF1181_RS16505 UvrD-helicase domain-containing protein 0.44 50
Mucilaginibacter yixingensis YX-36 DSM 26809 0.50 ABZR88_RS18670 excinuclease ABC subunit UvrA 0.30 ABZR88_RS07840 ATP-dependent helicase — —
Desulfovibrio vulgaris Hildenborough JW710 0.48 DVU1987 uvrA excinuclease ABC, A subunit (TIGR) 0.20 DVU0156 pcrA ATP-dependent DNA helicase, UvrD/REP family (TIGR) low > 55
Desulfovibrio vulgaris Miyazaki F 0.47 DvMF_3050 excinuclease ABC, A subunit (RefSeq) 0.17 DvMF_1967 UvrD/REP helicase (RefSeq) 0.46 7

Not shown: 8 genomes with orthologs for Dsui_1622 only; 1 genomes with orthologs for Dsui_1227 only