Conservation of cofitness between Dsui_2385 and Dsui_0707 in Dechlorosoma suillum PS

94 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Dechlorosoma suillum PS 1.0 Dsui_2385 transcription-repair coupling factor Mfd 1.0 Dsui_0707 protein RecA 0.86 10
Cupriavidus basilensis FW507-4G11 0.64 RR42_RS07845 transcription-repair coupling factor 0.78 RR42_RS03080 recombinase RecA 0.33 59
Ralstonia sp. UNC404CL21Col 0.64 ABZR87_RS13240 transcription-repair coupling factor 0.75 ABZR87_RS07965 recombinase RecA low > 80
Herbaspirillum seropedicae SmR1 0.64 HSERO_RS15180 transcription-repair coupling factor 0.74 HSERO_RS03270 protein RecA low > 78
Paraburkholderia graminis OAS925 0.64 ABIE53_002095 transcription-repair coupling factor (superfamily II helicase) 0.79 ABIE53_003448 recombination protein RecA 0.43 54
Paraburkholderia bryophila 376MFSha3.1 0.64 H281DRAFT_00880 transcription-repair coupling factor 0.79 H281DRAFT_04208 RecA protein low > 103
Ralstonia solanacearum IBSBF1503 0.63 RALBFv3_RS01445 transcription-repair coupling factor 0.75 RALBFv3_RS12010 recombinase RecA low > 76
Ralstonia solanacearum UW163 0.63 UW163_RS14755 transcription-repair coupling factor 0.75 UW163_RS01625 recombinase RecA — —
Ralstonia solanacearum GMI1000 0.63 RS_RS08275 transcription-repair coupling factor 0.75 RS_RS02760 DNA recombination/repair protein RecA — —
Burkholderia phytofirmans PsJN 0.63 BPHYT_RS09290 helicase 0.79 BPHYT_RS16360 recombinase RecA — —
Paraburkholderia sabiae LMG 24235 0.63 QEN71_RS22060 transcription-repair coupling factor 0.81 QEN71_RS02335 recombinase RecA — —
Ralstonia solanacearum PSI07 0.63 RPSI07_RS16040 transcription-repair coupling factor 0.75 RPSI07_RS21260 recombinase RecA low > 81
Variovorax sp. OAS795 0.60 ABID97_RS17285 transcription-repair coupling factor 0.75 ABID97_RS02275 recombinase RecA low > 91
Hydrogenophaga sp. GW460-11-11-14-LB1 0.59 GFF4934 Transcription-repair coupling factor 0.73 GFF2500 RecA protein low > 90
Acidovorax sp. GW101-3H11 0.59 Ac3H11_328 Transcription-repair coupling factor 0.75 Ac3H11_1255 RecA protein — —
Variovorax sp. SCN45 0.59 GFF412 Transcription-repair coupling factor 0.75 GFF5390 RecA protein 0.48 50
Castellaniella sp019104865 MT123 0.55 ABCV34_RS08660 transcription-repair coupling factor 0.77 ABCV34_RS04460 recombinase RecA low > 48
Pseudomonas stutzeri RCH2 0.48 Psest_1653 transcription-repair coupling factor (mfd) 0.75 Psest_2872 protein RecA low > 67
Pseudomonas fluorescens FW300-N2E2 0.48 Pf6N2E2_2278 Transcription-repair coupling factor 0.73 Pf6N2E2_2993 RecA protein — —
Pseudomonas sp. S08-1 0.48 OH686_21990 transcription-repair coupling factor 0.73 OH686_18205 protein RecA low > 80
Pseudomonas fluorescens FW300-N2C3 0.48 AO356_02270 transcription-repair coupling factor 0.73 AO356_05670 recombinase RecA 0.37 81
Pseudomonas fluorescens FW300-N2E3 0.47 AO353_00435 transcription-repair coupling factor 0.73 AO353_16805 recombinase RecA low > 101
Pseudomonas sp. RS175 0.47 PFR28_01123 Transcription-repair-coupling factor 0.73 PFR28_00472 Protein RecA low > 88
Pseudomonas syringae pv. syringae B728a 0.47 Psyr_1896 transcription-repair coupling factor 0.74 Psyr_1378 RecA protein low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.47 Psyr_1896 transcription-repair coupling factor 0.74 Psyr_1378 RecA protein 0.33 28
Pseudomonas simiae WCS417 0.47 PS417_07635 transcription-repair coupling factor 0.74 PS417_05815 recombinase RecA 0.20 77
Pseudomonas fluorescens GW456-L13 0.47 PfGW456L13_4027 Transcription-repair coupling factor 0.73 PfGW456L13_4668 RecA protein low > 87
Pseudomonas fluorescens FW300-N1B4 0.47 Pf1N1B4_3916 Transcription-repair coupling factor 0.73 Pf1N1B4_3143 RecA protein low > 87
Pseudomonas fluorescens SBW25-INTG 0.47 PFLU_RS07710 transcription-repair coupling factor 0.74 PFLU_RS05885 recombinase RecA low > 109
Pseudomonas fluorescens SBW25 0.47 PFLU_RS07710 transcription-repair coupling factor 0.74 PFLU_RS05885 recombinase RecA low > 109
Alteromonas macleodii MIT1002 0.46 MIT1002_01646 Transcription-repair-coupling factor 0.77 MIT1002_00955 Recombinase A low > 70
Pseudomonas putida KT2440 0.46 PP_2148 transcription-repair coupling factor 0.75 PP_1629 Protein RecA low > 96
Rhodanobacter denitrificans FW104-10B01 0.46 LRK54_RS02040 transcription-repair coupling factor 0.81 LRK54_RS14980 recombinase RecA low > 59
Kangiella aquimarina DSM 16071 0.46 B158DRAFT_1800 transcription-repair coupling factor 0.78 B158DRAFT_1531 protein RecA low > 40
Rhodanobacter denitrificans MT42 0.46 LRK55_RS01815 transcription-repair coupling factor 0.81 LRK55_RS14695 recombinase RecA low > 63
Dyella japonica UNC79MFTsu3.2 0.45 ABZR86_RS21210 transcription-repair coupling factor 0.78 ABZR86_RS00660 recombinase RecA 0.40 18
Marinobacter adhaerens HP15 0.45 HP15_2257 transcription-repair-coupling factor 0.74 HP15_1048 recombinase A low > 73
Vibrio cholerae E7946 ATCC 55056 0.44 CSW01_09445 transcription-repair coupling factor 0.73 CSW01_02875 DNA recombination/repair protein RecA 0.50 14
Shewanella sp. ANA-3 0.44 Shewana3_2289 transcription-repair coupling factor (RefSeq) 0.73 Shewana3_1126 recA recombinase A (RefSeq) low > 73
Rhodanobacter sp. FW510-T8 0.44 OKGIIK_09105 mfd transcription-repair coupling factor 0.81 OKGIIK_03740 recA recombinase RecA low > 52
Shewanella oneidensis MR-1 0.44 SO2255 mfd transcription-repair coupling factor (NCBI ptt file) 0.74 SO3430 recA recA protein (NCBI ptt file) low > 76
Pantoea sp. MT58 0.44 IAI47_11975 transcription-repair coupling factor 0.72 IAI47_04300 recombinase RecA low > 76
Escherichia coli ECOR38 0.44 HEPCGN_24015 mfd transcription-repair coupling factor 0.73 HEPCGN_19900 recA recombinase RecA low > 85
Escherichia coli HS(pFamp)R (ATCC 700891) 0.44 OHPLBJKB_02552 Transcription-repair-coupling factor 0.73 OHPLBJKB_01035 Protein RecA low > 73
Escherichia coli BW25113 0.44 b1114 mfd transcription-repair coupling factor (NCBI) 0.73 b2699 recA recombinase A (NCBI) low > 76
Escherichia coli ECRC99 0.44 KEDOAH_24285 mfd transcription-repair coupling factor 0.73 KEDOAH_07430 recA recombinase RecA — —
Escherichia fergusonii Becca 0.44 EFB2_02861 Transcription-repair-coupling factor 0.73 EFB2_01225 Protein RecA low > 86
Escherichia coli ECRC62 0.44 BNILDI_19160 mfd transcription-repair coupling factor 0.73 BNILDI_11105 recA recombinase RecA — —
Escherichia coli ECRC101 0.44 OKFHMN_03470 mfd transcription-repair coupling factor 0.73 OKFHMN_20705 recA recombinase RecA — —
Escherichia coli ECRC102 0.44 NIAGMN_24360 mfd transcription-repair coupling factor 0.73 NIAGMN_18475 recA recombinase RecA — —
Escherichia coli ECRC101 0.44 MCAODC_22830 mfd transcription-repair coupling factor 0.73 MCAODC_11230 recA recombinase RecA — —
Escherichia coli ECRC98 0.44 JDDGAC_07130 mfd transcription-repair coupling factor 0.73 JDDGAC_24370 recA recombinase RecA — —
Escherichia coli ECOR27 0.44 NOLOHH_20995 mfd transcription-repair coupling factor 0.73 NOLOHH_12545 recA recombinase RecA — —
Escherichia coli BL21 0.44 ECD_01110 transcription-repair coupling factor 0.73 ECD_02549 DNA recombination and repair protein; ssDNA-dependent ATPase; synaptase; ssDNA and dsDNA binding protein; ATP-dependent homologous DNA strand exchanger; recombinase A; LexA autocleavage cofactor low > 60
Shewanella amazonensis SB2B 0.43 Sama_1330 transcription-repair coupling factor (RefSeq) 0.71 Sama_1046 recA recombinase A (RefSeq) 0.37 47
Enterobacter asburiae PDN3 0.43 EX28DRAFT_1816 transcription-repair coupling factor (mfd) 0.72 EX28DRAFT_2785 protein RecA — —
Pectobacterium carotovorum WPP14 0.43 HER17_RS08775 transcription-repair coupling factor 0.73 HER17_RS05045 recombinase RecA 0.55 8
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.43 GFF3397 Transcription-repair coupling factor 0.73 GFF4693 RecA protein — —
Shewanella loihica PV-4 0.43 Shew_1630 transcription-repair coupling factor (RefSeq) 0.71 Shew_1215 recA recombinase A (RefSeq) low > 60
Klebsiella michiganensis M5al 0.43 BWI76_RS11205 transcription-repair coupling factor 0.73 BWI76_RS22180 recombinase RecA — —
Enterobacter sp. TBS_079 0.43 MPMX20_01795 Transcription-repair-coupling factor 0.72 MPMX20_03580 Protein RecA low > 85
Erwinia tracheiphila SCR3 0.43 LU632_RS14730 mfd transcription-repair coupling factor 0.73 LU632_RS15735 recA recombinase RecA low > 74
Lysobacter sp. OAE881 0.43 ABIE51_RS14320 transcription-repair coupling factor 0.74 ABIE51_RS07800 recombinase RecA low > 62
Acinetobacter radioresistens SK82 0.43 MPMX26_01319 Transcription-repair-coupling factor 0.75 MPMX26_01308 Protein RecA low > 36
Dickeya dadantii 3937 0.43 DDA3937_RS13000 transcription-repair coupling factor 0.73 DDA3937_RS16245 recombinase RecA low > 74
Dickeya dianthicola 67-19 0.43 HGI48_RS13065 transcription-repair coupling factor 0.72 HGI48_RS16355 recombinase RecA low > 71
Dickeya dianthicola ME23 0.43 DZA65_RS13530 transcription-repair coupling factor 0.72 DZA65_RS17450 recombinase RecA — —
Rahnella sp. WP5 0.42 EX31_RS24520 transcription-repair coupling factor 0.72 EX31_RS07800 recombinase RecA low > 89
Serratia liquefaciens MT49 0.42 IAI46_10320 transcription-repair coupling factor 0.72 IAI46_03840 recombinase RecA low > 86
Xanthomonas campestris pv. campestris strain 8004 0.42 Xcc-8004.1775.1 Transcription-repair coupling factor 0.74 Xcc-8004.3111.1 RecA protein — —
Caulobacter crescentus NA1000 Δfur 0.33 CCNA_01920 transcription-repair coupling factor Mfd 0.68 CCNA_01141 RecA protein — —
Caulobacter crescentus NA1000 0.33 CCNA_01920 transcription-repair coupling factor Mfd 0.68 CCNA_01141 RecA protein 0.47 31
Brevundimonas sp. GW460-12-10-14-LB2 0.32 A4249_RS04775 transcription-repair coupling factor 0.71 A4249_RS12615 recombinase RecA low > 48
Magnetospirillum magneticum AMB-1 0.31 AMB_RS12390 transcription-repair coupling factor 0.72 AMB_RS03205 DNA recombination/repair protein RecA low > 64
Sphingomonas koreensis DSMZ 15582 0.31 Ga0059261_0960 transcription-repair coupling factor (mfd) 0.69 Ga0059261_0204 protein RecA low > 68
Azospirillum sp. SherDot2 0.31 MPMX19_00876 Transcription-repair-coupling factor 0.71 MPMX19_00869 Protein RecA — —
Rhodospirillum rubrum S1H 0.30 Rru_A1726 Transcription-repair coupling factor (NCBI) 0.70 Rru_A2819 RecA DNA recombination protein (NCBI) — —
Rhodopseudomonas palustris CGA009 0.30 TX73_013805 transcription-repair coupling factor 0.72 TX73_019940 recombinase RecA — —
Dinoroseobacter shibae DFL-12 0.29 Dshi_1561 transcription-repair coupling factor (RefSeq) 0.65 Dshi_1643 recA protein (RefSeq) low > 64
Bosea sp. OAE506 0.29 ABIE41_RS15825 transcription-repair coupling factor 0.68 ABIE41_RS13335 recombinase RecA low > 77
Phaeobacter inhibens DSM 17395 0.29 PGA1_c14920 transcription-repair-coupling factor Mfd 0.71 PGA1_c15260 protein recA (recombinase A) low > 62
Agrobacterium fabrum C58 0.29 Atu1778 transcription-repair coupling factor 0.71 Atu1874 RecA protein 0.46 14
Sinorhizobium meliloti 1021 0.29 SMc04450 transcription-repair coupling factor 0.70 SMc00760 recombinase A low > 103
Rhizobium sp. OAE497 0.29 ABIE40_RS09310 transcription-repair coupling factor 0.71 ABIE40_RS10320 recombinase RecA low > 107
Synechococcus elongatus PCC 7942 0.26 Synpcc7942_1326 mfd transcription-repair coupling factor 0.58 Synpcc7942_0348 recA recombinase A — —
Echinicola vietnamensis KMM 6221, DSM 17526 0.25 Echvi_1312 transcription-repair coupling factor (mfd) 0.61 Echvi_0044 protein RecA 0.46 2
Bifidobacterium breve UCC2003 0.25 BBR_RS14115 transcription-repair coupling factor 0.67 BBR_RS16530 recombinase RecA low > 34
Parabacteroides merdae CL09T00C40 0.25 HMPREF1078_RS02110 transcription-repair coupling factor 0.63 HMPREF1078_RS00095 recombinase RecA low > 61
Phocaeicola vulgatus CL09T03C04 0.25 HMPREF1058_RS15450 transcription-repair coupling factor 0.64 HMPREF1058_RS15965 recombinase RecA low > 67
Desulfovibrio vulgaris Miyazaki F 0.25 DvMF_0285 transcription-repair coupling factor (RefSeq) 0.63 DvMF_0876 recA recombinase A (RefSeq) low > 51
Phocaeicola dorei CL03T12C01 0.25 ABI39_RS11420 transcription-repair coupling factor 0.64 ABI39_RS11930 recombinase RecA low > 72
Desulfovibrio vulgaris Hildenborough JW710 0.25 DVU1903 mfd transcription-repair coupling factor (TIGR) 0.64 DVU1090 recA recA protein (TIGR) 0.44 8
Pontibacter actiniarum KMM 6156, DSM 19842 0.24 CA264_15820 transcription-repair coupling factor 0.65 CA264_19695 DNA recombination/repair protein RecA — —
Bacteroides thetaiotaomicron VPI-5482 0.24 BT0252 transcription-repair coupling factor (NCBI ptt file) 0.62 BT4610 RecA (NCBI ptt file) 0.43 19
Bacteroides ovatus ATCC 8483 0.24 BACOVA_00401 transcription-repair coupling factor 0.63 BACOVA_05402 RecA protein low > 94

Not shown: 1 genomes with orthologs for Dsui_2385 only; 6 genomes with orthologs for Dsui_0707 only