Conservation of cofitness between CSW01_01495 and CSW01_18625 in Vibrio cholerae E7946 ATCC 55056

102 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_01495 tRNA dihydrouridine synthase DusB 1.0 CSW01_18625 glucose-6-phosphate dehydrogenase 0.52 11
Escherichia coli BW25113 0.69 b3260 dusB tRNA-dihydrouridine synthase B (NCBI) 0.37 b1852 zwf glucose-6-phosphate 1-dehydrogenase (NCBI) — —
Escherichia coli Nissle 1917 0.69 ECOLIN_RS18725 tRNA dihydrouridine synthase DusB 0.37 ECOLIN_RS10315 glucose-6-phosphate dehydrogenase — —
Escherichia coli ECRC100 0.69 OKFHMN_17685 dusB tRNA dihydrouridine synthase DusB 0.37 OKFHMN_26335 zwf glucose-6-phosphate dehydrogenase low > 79
Escherichia coli ECOR38 0.69 HEPCGN_16505 dusB tRNA dihydrouridine synthase DusB 0.37 HEPCGN_04740 zwf glucose-6-phosphate dehydrogenase low > 88
Escherichia coli ECRC101 0.69 MCAODC_08205 dusB tRNA dihydrouridine synthase DusB 0.37 MCAODC_19070 zwf glucose-6-phosphate dehydrogenase low > 88
Escherichia coli ECRC62 0.69 BNILDI_02050 dusB tRNA dihydrouridine synthase DusB 0.36 BNILDI_15640 zwf glucose-6-phosphate dehydrogenase low > 75
Escherichia fergusonii Becca 0.69 EFB2_00564 tRNA-dihydrouridine synthase B 0.37 EFB2_02091 Glucose-6-phosphate 1-dehydrogenase low > 86
Escherichia coli ECOR27 0.69 NOLOHH_09470 dusB tRNA dihydrouridine synthase DusB 0.37 NOLOHH_16845 zwf glucose-6-phosphate dehydrogenase low > 76
Escherichia coli ECRC102 0.69 NIAGMN_15445 dusB tRNA dihydrouridine synthase DusB 0.37 NIAGMN_01725 zwf glucose-6-phosphate dehydrogenase low > 80
Escherichia coli BL21 0.69 ECD_03118 tRNA-dihydrouridine synthase B 0.37 ECD_01823 glucose-6-phosphate 1-dehydrogenase — —
Alteromonas macleodii MIT1002 0.69 MIT1002_03957 putative tRNA-dihydrouridine synthase 0.38 MIT1002_02407 Glucose-6-phosphate 1-dehydrogenase low > 70
Erwinia amylovora T8 0.69 OLJFJH_06855 tRNA dihydrouridine synthase DusB 0.37 OLJFJH_12900 glucose-6-phosphate dehydrogenase — —
Serratia liquefaciens MT49 0.68 IAI46_22775 tRNA dihydrouridine synthase DusB 0.37 IAI46_14575 glucose-6-phosphate dehydrogenase — —
Enterobacter sp. TBS_079 0.68 MPMX20_04169 tRNA-dihydrouridine synthase B 0.36 MPMX20_02757 Glucose-6-phosphate 1-dehydrogenase low > 85
Klebsiella michiganensis M5al 0.68 BWI76_RS25565 tRNA dihydrouridine synthase DusB 0.36 BWI76_RS18105 glucose-6-phosphate dehydrogenase — —
Rahnella sp. WP5 0.68 EX31_RS12180 tRNA dihydrouridine synthase DusB 0.37 EX31_RS10630 glucose-6-phosphate dehydrogenase — —
Klebsiella pneumoniae MKP103 0.68 KDGMDA_06325 tRNA dihydrouridine synthase DusB 0.36 KDGMDA_25370 glucose-6-phosphate dehydrogenase low > 95
Dickeya dianthicola ME23 0.68 DZA65_RS01355 tRNA dihydrouridine synthase DusB 0.36 DZA65_RS10580 glucose-6-phosphate dehydrogenase low > 75
Dickeya dianthicola 67-19 0.68 HGI48_RS01295 tRNA dihydrouridine synthase DusB 0.36 HGI48_RS10165 glucose-6-phosphate dehydrogenase low > 71
Dickeya dadantii 3937 0.67 DDA3937_RS01375 tRNA dihydrouridine synthase DusB 0.37 DDA3937_RS10135 glucose-6-phosphate dehydrogenase low > 74
Erwinia tracheiphila HP pepo 2.2 0.67 IJEDHG_13500 dusB tRNA dihydrouridine synthase DusB 0.36 IJEDHG_22195 zwf glucose-6-phosphate dehydrogenase low > 61
Enterobacter asburiae PDN3 0.67 EX28DRAFT_3313 putative TIM-barrel protein, nifR3 family 0.36 EX28DRAFT_0704 glucose-6-phosphate 1-dehydrogenase — —
Pantoea sp. MT58 0.66 IAI47_02385 tRNA dihydrouridine synthase DusB 0.37 IAI47_08495 glucose-6-phosphate dehydrogenase — —
Pantoea agglomerans CFBP13505 P0401 0.66 PagCFBP13505_RS10980 tRNA dihydrouridine synthase DusB 0.37 PagCFBP13505_RS02375 glucose-6-phosphate dehydrogenase — —
Pectobacterium carotovorum WPP14 0.66 HER17_RS20235 tRNA dihydrouridine synthase DusB 0.36 HER17_RS11780 glucose-6-phosphate dehydrogenase low > 75
Shewanella amazonensis SB2B 0.65 Sama_3225 tRNA-dihydrouridine synthase B (RefSeq) 0.37 Sama_1812 glucose-6-phosphate 1-dehydrogenase (RefSeq) — —
Shewanella oneidensis MR-1 0.64 SO0394 conserved hypothetical protein (NCBI ptt file) 0.37 SO2489 zwf glucose-6-phosphate 1-dehydrogenase (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.63 Shewana3_0399 nifR3 family TIM-barrel protein (RefSeq) 0.37 Shewana3_2151 glucose-6-phosphate 1-dehydrogenase (RefSeq) — —
Escherichia coli ECRC98 0.62 JDDGAC_21310 dusB tRNA dihydrouridine synthase DusB 0.37 JDDGAC_00910 zwf glucose-6-phosphate dehydrogenase low > 87
Escherichia coli ECRC99 0.62 KEDOAH_10465 dusB tRNA dihydrouridine synthase DusB 0.37 KEDOAH_01770 zwf glucose-6-phosphate dehydrogenase — —
Shewanella loihica PV-4 0.61 Shew_0330 nifR3 family TIM-barrel protein (RefSeq) 0.35 Shew_2048 glucose-6-phosphate 1-dehydrogenase (RefSeq) — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.61 OHPLBJKB_00445 putative tRNA-dihydrouridine synthase 0.37 OHPLBJKB_01877 Glucose-6-phosphate 1-dehydrogenase low > 74
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.60 GFF2124 tRNA dihydrouridine synthase B (EC 1.-.-.-) 0.36 GFF1631 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) low > 78
Marinobacter adhaerens HP15 0.60 HP15_3225 tRNA-dihydrouridine synthase B 0.37 HP15_2179 glucose-6-phosphate 1-dehydrogenase low > 73
Pseudomonas aeruginosa PA14 0.58 IKLFDK_29300 tRNA dihydrouridine synthase DusB 0.37 IKLFDK_26225 glucose-6-phosphate dehydrogenase low > 100
Pseudomonas sp. S08-1 0.57 OH686_07610 tRNA-dihydrouridine synthase DusB 0.37 OH686_13085 glucose-6-phosphate dehydrogenase low > 80
Pseudomonas segetis P6 0.57 MPMX49_04106 tRNA-dihydrouridine synthase B 0.38 MPMX49_00178 Glucose-6-phosphate 1-dehydrogenase low > 75
Pseudomonas putida KT2440 0.56 PP_4820 tRNA-dihydrouridine synthase B 0.38 PP_4042 glucose-6-phosphate 1-dehydrogenase low > 96
Lysobacter sp. OAE881 0.56 ABIE51_RS16450 tRNA dihydrouridine synthase DusB 0.40 ABIE51_RS01620 glucose-6-phosphate dehydrogenase — —
Pseudomonas fluorescens GW456-L13 0.56 PfGW456L13_55 tRNA dihydrouridine synthase B (EC 1.-.-.-) 0.38 PfGW456L13_3002 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) low > 87
Pseudomonas syringae pv. syringae B728a ΔmexB 0.56 Psyr_4404 tRNA-U20-dihydrouridine synthase 0.37 Psyr_2988 glucose-6-phosphate 1-dehydrogenase low > 86
Pseudomonas syringae pv. syringae B728a 0.56 Psyr_4404 tRNA-U20-dihydrouridine synthase 0.37 Psyr_2988 glucose-6-phosphate 1-dehydrogenase low > 86
Pseudomonas sp. BP01 0.56 JOY50_RS17635 dusB tRNA dihydrouridine synthase DusB 0.38 JOY50_RS06695 zwf glucose-6-phosphate dehydrogenase low > 84
Pseudomonas sp. DMC3 0.56 GFF3310 tRNA-dihydrouridine synthase B 0.38 GFF3450 Glucose-6-phosphate 1-dehydrogenase low > 89
Pseudomonas stutzeri RCH2 0.56 Psest_1016 putative TIM-barrel protein, nifR3 family 0.37 Psest_4089 glucose-6-phosphate 1-dehydrogenase low > 67
Pseudomonas fluorescens FW300-N2E2 0.56 Pf6N2E2_3517 tRNA dihydrouridine synthase B (EC 1.-.-.-) 0.38 Pf6N2E2_758 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) low > 103
Pseudomonas sp. RS175 0.56 PFR28_05216 tRNA-dihydrouridine synthase B 0.37 PFR28_01674 Glucose-6-phosphate 1-dehydrogenase low > 88
Pseudomonas lactucae CFBP13502 0.56 GEMAOFIL_00822 tRNA-dihydrouridine synthase B 0.36 GEMAOFIL_04558 Glucose-6-phosphate 1-dehydrogenase low > 93
Pseudomonas fluorescens FW300-N2C3 0.56 AO356_08215 tRNA-dihydrouridine synthase B 0.38 AO356_27850 glucose-6-phosphate dehydrogenase low > 104
Paraburkholderia bryophila 376MFSha3.1 0.55 H281DRAFT_04249 tRNA-U20-dihydrouridine synthase 0.37 H281DRAFT_00165 glucose-6-phosphate 1-dehydrogenase low > 103
Ralstonia sp. UNC404CL21Col 0.55 ABZR87_RS07650 tRNA dihydrouridine synthase DusB 0.36 ABZR87_RS22915 glucose-6-phosphate dehydrogenase low > 80
Paraburkholderia sabiae LMG 24235 0.55 QEN71_RS26770 tRNA dihydrouridine synthase DusB 0.38 QEN71_RS08005 glucose-6-phosphate dehydrogenase low > 153
Pseudomonas fluorescens FW300-N2E3 0.55 AO353_13660 tRNA-dihydrouridine synthase B 0.37 AO353_25830 glucose-6-phosphate dehydrogenase low > 101
Pseudomonas fluorescens SBW25 0.55 PFLU_RS03025 tRNA dihydrouridine synthase DusB 0.36 PFLU_RS13140 glucose-6-phosphate dehydrogenase low > 109
Pseudomonas fluorescens SBW25-INTG 0.55 PFLU_RS03025 tRNA dihydrouridine synthase DusB 0.36 PFLU_RS13140 glucose-6-phosphate dehydrogenase low > 109
Pseudomonas simiae WCS417 0.55 PS417_02950 tRNA-dihydrouridine synthase B 0.35 PS417_12450 glucose-6-phosphate dehydrogenase low > 88
Pseudomonas fluorescens FW300-N1B4 0.55 Pf1N1B4_1313 tRNA dihydrouridine synthase B (EC 1.-.-.-) 0.38 Pf1N1B4_4726 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) low > 87
Ralstonia solanacearum GMI1000 0.55 RS_RS02515 tRNA dihydrouridine synthase DusB 0.37 RS_RS24615 glucose-6-phosphate dehydrogenase low > 80
Methylophilus sp. DMC18 0.55 GFF1646 tRNA-dihydrouridine synthase B 0.30 GFF1064 Glucose-6-phosphate 1-dehydrogenase — —
Ralstonia solanacearum PSI07 0.55 RPSI07_RS21520 tRNA dihydrouridine synthase DusB 0.36 RPSI07_RS07315 glucose-6-phosphate dehydrogenase low > 81
Pseudomonas sp. SVBP6 0.54 COO64_RS18315 dusB tRNA dihydrouridine synthase DusB 0.38 COO64_RS24825 zwf glucose-6-phosphate dehydrogenase low > 93
Ralstonia solanacearum IBSBF1503 0.54 RALBFv3_RS11695 tRNA dihydrouridine synthase DusB 0.36 RALBFv3_RS16390 glucose-6-phosphate dehydrogenase low > 76
Ralstonia solanacearum UW163 0.54 UW163_RS01890 tRNA dihydrouridine synthase DusB 0.36 UW163_RS17130 glucose-6-phosphate dehydrogenase — —
Variovorax sp. OAS795 0.53 ABID97_RS24735 tRNA dihydrouridine synthase DusB 0.36 ABID97_RS07065 glucose-6-phosphate dehydrogenase low > 91
Paraburkholderia graminis OAS925 0.53 ABIE53_003489 tRNA-dihydrouridine synthase B 0.36 ABIE53_006464 glucose-6-phosphate 1-dehydrogenase low > 113
Rhodanobacter denitrificans MT42 0.53 LRK55_RS11875 tRNA dihydrouridine synthase DusB 0.39 LRK55_RS07600 glucose-6-phosphate dehydrogenase — —
Rhodanobacter denitrificans FW104-10B01 0.53 LRK54_RS12140 tRNA dihydrouridine synthase DusB 0.39 LRK54_RS07870 glucose-6-phosphate dehydrogenase — —
Herbaspirillum seropedicae SmR1 0.53 HSERO_RS02050 tRNA-dihydrouridine synthase B 0.39 HSERO_RS05510 glucose-6-phosphate 1-dehydrogenase — —
Cupriavidus basilensis FW507-4G11 0.53 RR42_RS02730 tRNA-dihydrouridine synthase B 0.37 RR42_RS37405 glucose-6-phosphate dehydrogenase low > 128
Variovorax sp. SCN45 0.52 GFF2144 tRNA-dihydrouridine synthase DusB 0.36 GFF5261 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) low > 127
Burkholderia phytofirmans PsJN 0.52 BPHYT_RS16585 tRNA-dihydrouridine synthase B 0.38 BPHYT_RS05020 glucose-6-phosphate 1-dehydrogenase low > 109
Rhodanobacter sp. FW510-T8 0.52 OKGIIK_11770 dusB tRNA dihydrouridine synthase DusB 0.39 OKGIIK_14360 zwf glucose-6-phosphate dehydrogenase — —
Dyella japonica UNC79MFTsu3.2 0.52 ABZR86_RS11525 tRNA dihydrouridine synthase DusB 0.40 ABZR86_RS14700 glucose-6-phosphate dehydrogenase low > 74
Rhodanobacter sp000427505 FW510-R12 0.52 LRK53_RS16445 tRNA dihydrouridine synthase DusB 0.39 LRK53_RS00675 glucose-6-phosphate dehydrogenase — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.47 GFF634 tRNA dihydrouridine synthase B (EC 1.-.-.-) 0.37 GFF5493 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) low > 90
Acidovorax sp. GW101-3H11 0.46 Ac3H11_3996 tRNA dihydrouridine synthase B (EC 1.-.-.-) 0.37 Ac3H11_2076 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) low > 79
Azospirillum sp. SherDot2 0.38 MPMX19_01110 tRNA-dihydrouridine synthase B 0.40 MPMX19_05119 Glucose-6-phosphate 1-dehydrogenase low > 112
Agrobacterium fabrum C58 0.37 Atu1444 nitrogen regulation protein 0.40 Atu0600 glucose-6-phosphate 1-dehydrogenase — —
Rhizobium sp. OAE497 0.37 ABIE40_RS09080 tRNA dihydrouridine synthase DusB 0.39 ABIE40_RS03200 glucose-6-phosphate dehydrogenase — —
Sphingomonas koreensis DSMZ 15582 0.37 Ga0059261_0140 tRNA-U20-dihydrouridine synthase 0.36 Ga0059261_0352 glucose-6-phosphate 1-dehydrogenase — —
Sinorhizobium meliloti 1021 0.36 SMc01041 NIFR3-like protein 0.38 SMc03070 glucose-6-phosphate 1-dehydrogenase low > 103
Phaeobacter inhibens DSM 17395 0.36 PGA1_c14770 tRNA-dihydrouridine synthase DusB 0.36 PGA1_c15160 glucose-6-phosphate 1-dehydrogenase 0.33 44
Xanthobacter sp. DMC5 0.36 GFF850 tRNA-dihydrouridine synthase B 0.39 GFF3231 Glucose-6-phosphate 1-dehydrogenase — —
Sphingobium sp. HT1-2 0.36 GFF1150 tRNA-dihydrouridine synthase DusB 0.37 GFF1592 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) low > 95
Rhodopseudomonas palustris CGA009 0.33 TX73_013410 tRNA dihydrouridine synthase DusB 0.40 TX73_018845 glucose-6-phosphate dehydrogenase low > 86
Brevundimonas sp. GW460-12-10-14-LB2 0.33 A4249_RS04810 tRNA dihydrouridine synthase DusB 0.34 A4249_RS10725 glucose-6-phosphate dehydrogenase — —
Synechocystis sp000284455 PCC 6803 0.32 SGL_RS14330 tRNA dihydrouridine synthase DusB 0.42 SGL_RS06375 glucose-6-phosphate dehydrogenase low > 52
Dinoroseobacter shibae DFL-12 0.32 Dshi_1576 putative TIM-barrel protein, nifR3 family (RefSeq) 0.37 Dshi_1684 glucose-6-phosphate 1-dehydrogenase (RefSeq) — —
Parabacteroides merdae CL09T00C40 0.32 HMPREF1078_RS05375 tRNA dihydrouridine synthase DusB 0.46 HMPREF1078_RS08635 glucose-6-phosphate dehydrogenase low > 61
Phocaeicola dorei CL03T12C01 0.32 ABI39_RS06125 tRNA dihydrouridine synthase DusB 0.49 ABI39_RS14355 glucose-6-phosphate dehydrogenase low > 72
Bacteroides ovatus ATCC 8483 0.31 BACOVA_02724 TIM-barrel protein, nifR3 family 0.53 BACOVA_00508 glucose-6-phosphate dehydrogenase low > 96
Phocaeicola vulgatus CL09T03C04 0.31 HMPREF1058_RS10945 tRNA dihydrouridine synthase DusB 0.49 HMPREF1058_RS18030 glucose-6-phosphate dehydrogenase low > 67
Bacteroides thetaiotaomicron VPI-5482 0.31 BT3073 putative TIM-barrel enzyme, possible dehydrogenase, contains a highly conserved dihydrouridine synthase domain (NCBI ptt file) 0.54 BT1221 glucose-6-phosphate 1-dehydrogenase (NCBI ptt file) low > 81
Pedobacter sp. GW460-11-11-14-LB5 0.30 CA265_RS21125 tRNA dihydrouridine synthase DusB 0.42 CA265_RS09810 glucose-6-phosphate dehydrogenase low > 88
Bacteroides stercoris CC31F 0.30 HMPREF1181_RS01530 tRNA dihydrouridine synthase DusB 0.54 HMPREF1181_RS12520 glucose-6-phosphate dehydrogenase low > 56
Mucilaginibacter yixingensis YX-36 DSM 26809 0.30 ABZR88_RS22340 tRNA dihydrouridine synthase DusB 0.42 ABZR88_RS02975 glucose-6-phosphate dehydrogenase low > 71
Echinicola vietnamensis KMM 6221, DSM 17526 0.30 Echvi_1531 putative TIM-barrel protein, nifR3 family 0.40 Echvi_2862 glucose-6-phosphate 1-dehydrogenase low > 79
Caulobacter crescentus NA1000 Δfur 0.29 CCNA_01813 tRNA-dihydrouridine synthase 0.33 CCNA_02136 glucose-6-phosphate 1-dehydrogenase low > 67
Caulobacter crescentus NA1000 0.29 CCNA_01813 tRNA-dihydrouridine synthase 0.33 CCNA_02136 glucose-6-phosphate 1-dehydrogenase — —
Cellulophaga baltica 18 0.28 M666_RS04760 tRNA dihydrouridine synthase DusB 0.51 M666_RS18125 glucose-6-phosphate dehydrogenase low > 67
Mycobacterium tuberculosis H37Rv 0.25 Rv0823c Possible transcriptional regulatory protein 0.34 Rv1447c Probable glucose-6-phosphate 1-dehydrogenase Zwf2 (G6PD) low > 58
Synechococcus elongatus PCC 7942 0.24 Synpcc7942_0283 Dihydrouridine synthase TIM-barrel protein nifR3 0.42 Synpcc7942_2334 zwf glucose-6-phosphate 1-dehydrogenase low > 38

Not shown: 11 genomes with orthologs for CSW01_01495 only; 4 genomes with orthologs for CSW01_18625 only