Conservation of cofitness between CSW01_12410 and CSW01_09180 in Vibrio cholerae E7946 ATCC 55056

103 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_12410 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 1.0 CSW01_09180 quinolinate synthase 0.52 15
Serratia liquefaciens MT49 0.48 IAI46_03595 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.76 IAI46_06380 quinolinate synthase NadA low > 87
Pectobacterium carotovorum WPP14 0.48 HER17_RS04110 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.77 HER17_RS14820 quinolinate synthase NadA low > 75
Pantoea sp. MT58 0.47 IAI47_04115 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.75 IAI47_13635 quinolinate synthase NadA low > 76
Pantoea agglomerans CFBP13505 P0401 0.47 PagCFBP13505_RS16855 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.75 PagCFBP13505_RS03665 quinolinate synthase NadA low > 74
Klebsiella pneumoniae MKP103 0.46 KDGMDA_03340 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.73 KDGMDA_16840 quinolinate synthase NadA low > 95
Klebsiella michiganensis M5al 0.46 BWI76_RS22810 23S rRNA (uracil(1939)-C(5))-methyltransferase 0.74 BWI76_RS08580 quinolinate synthetase low > 92
Rahnella sp. WP5 0.46 EX31_RS07960 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.75 EX31_RS23525 quinolinate synthase NadA low > 89
Escherichia coli ECRC101 0.46 MCAODC_10770 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.73 MCAODC_25980 nadA quinolinate synthase NadA low > 87
Escherichia coli ECRC99 0.46 KEDOAH_07885 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.73 KEDOAH_21205 nadA quinolinate synthase NadA — —
Escherichia coli ECOR27 0.46 NOLOHH_12120 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.73 NOLOHH_23190 nadA quinolinate synthase NadA low > 76
Escherichia coli ECRC100 0.46 OKFHMN_20245 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.73 OKFHMN_06760 nadA quinolinate synthase NadA low > 79
Escherichia coli BW25113 0.46 b2785 rumA 23S rRNA (uracil-5-)-methyltransferase (NCBI) 0.73 b0750 nadA quinolinate synthetase (NCBI) 0.26 14
Escherichia coli HS(pFamp)R (ATCC 700891) 0.46 OHPLBJKB_00946 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.73 OHPLBJKB_02963 Quinolinate synthase A low > 74
Escherichia coli ECRC102 0.46 NIAGMN_18015 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.73 NIAGMN_04810 nadA quinolinate synthase NadA low > 80
Escherichia coli ECRC98 0.46 JDDGAC_23910 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.73 JDDGAC_10415 nadA quinolinate synthase NadA low > 87
Escherichia coli ECOR38 0.46 HEPCGN_19495 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.73 HEPCGN_01515 nadA quinolinate synthase NadA low > 88
Escherichia coli Nissle 1917 0.45 ECOLIN_RS15520 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.73 ECOLIN_RS03990 quinolinate synthase NadA low > 55
Escherichia coli ECRC62 0.45 BNILDI_10625 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.73 BNILDI_21185 nadA quinolinate synthase NadA low > 75
Erwinia tracheiphila HP pepo 2.2 0.45 IJEDHG_17370 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.60 IJEDHG_02045 nadA quinolinate synthase NadA low > 61
Escherichia coli BL21 0.45 ECD_02630 23S rRNA m(5)U1939 methyltransferase, SAM-dependent 0.73 ECD_00703 quinolinate synthase, subunit A low > 61
Escherichia fergusonii Becca 0.45 EFB2_01132 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.73 EFB2_03356 Quinolinate synthase A low > 86
Enterobacter sp. TBS_079 0.45 MPMX20_03654 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.75 MPMX20_01377 Quinolinate synthase A low > 85
Enterobacter asburiae PDN3 0.45 EX28DRAFT_2865 23S rRNA (uracil-5-)-methyltransferase RumA 0.75 EX28DRAFT_2245 quinolinate synthetase (EC 2.5.1.72) low > 76
Dickeya dadantii 3937 0.44 DDA3937_RS17020 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.69 DDA3937_RS06545 quinolinate synthase NadA low > 74
Dickeya dianthicola ME23 0.44 DZA65_RS18150 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.71 DZA65_RS06945 quinolinate synthase NadA low > 75
Shewanella oneidensis MR-1 0.43 SO3456 RNA methyltransferase, TrmA family (NCBI ptt file) 0.79 SO2342 nadA quinolinate synthetase complex, subunit A (NCBI ptt file) low > 76
Dickeya dianthicola 67-19 0.43 HGI48_RS17075 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.71 HGI48_RS06595 quinolinate synthase NadA low > 71
Shewanella sp. ANA-3 0.43 Shewana3_1110 rumA 23S rRNA 5-methyluridine methyltransferase (RefSeq) 0.79 Shewana3_2128 quinolinate synthetase (RefSeq) — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.43 GFF4838 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) 0.74 GFF4 Quinolinate synthetase (EC 2.5.1.72) — —
Shewanella amazonensis SB2B 0.43 Sama_1032 rumA 23S rRNA 5-methyluridine methyltransferase (RefSeq) 0.76 Sama_1712 quinolinate synthetase (RefSeq) — —
Shewanella loihica PV-4 0.41 Shew_1201 rumA 23S rRNA 5-methyluridine methyltransferase (RefSeq) 0.78 Shew_1928 quinolinate synthetase (RefSeq) — —
Pseudomonas sp. DMC3 0.40 GFF4819 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.66 GFF5174 Quinolinate synthase A low > 89
Pseudomonas stutzeri RCH2 0.40 Psest_1639 23S rRNA (uracil-5-)-methyltransferase RumA 0.66 Psest_1509 quinolinate synthetase complex, A subunit low > 67
Kangiella aquimarina DSM 16071 0.39 B158DRAFT_2275 23S rRNA (uracil-5-)-methyltransferase RumA 0.69 B158DRAFT_2453 quinolinate synthetase (EC 2.5.1.72) — —
Pseudomonas aeruginosa PUPa3 0.39 DQ20_RS45015 rlmD;go_function=RNA 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.66 DQ20_RS45330 nadA;go_function=quinolinate quinolinate synthase NadA low > 101
Pseudomonas aeruginosa MRSN321 0.39 DY961_RS07780 rlmD;go_function=RNA 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.66 DY961_RS07460 nadA;go_function=quinolinate quinolinate synthase NadA low > 100
Pseudomonas aeruginosa PA14 0.39 IKLFDK_04195 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.66 IKLFDK_04555 quinolinate synthase NadA low > 98
Pseudomonas simiae WCS417 0.39 PS417_20155 23S rRNA methyltransferase 0.64 PS417_22385 quinolinate synthase A low > 88
Pseudomonas lactucae CFBP13502 0.39 GEMAOFIL_04224 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.65 GEMAOFIL_04613 Quinolinate synthase A low > 96
Pseudomonas segetis P6 0.38 ACVTMO_RS08190 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.66 ACVTMO_RS08415 nadA quinolinate synthase NadA — —
Pseudomonas fluorescens FW300-N2E2 0.38 Pf6N2E2_5722 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 0.66 Pf6N2E2_5553 Quinolinate synthetase (EC 2.5.1.72) low > 103
Pseudomonas fluorescens SBW25-INTG 0.38 PFLU_RS22100 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.64 PFLU_RS24025 quinolinate synthase NadA low > 109
Pseudomonas fluorescens SBW25 0.38 PFLU_RS22100 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.64 PFLU_RS24025 quinolinate synthase NadA low > 109
Pseudomonas syringae pv. syringae B728a 0.38 Psyr_3696 23S rRNA m(5)U-1939 methyltransferase 0.63 Psyr_1542 quinolinate synthetase low > 86
Pseudomonas sp. S08-1 0.38 OH686_18955 23S rRNA (uracil-5-)-methyltransferase RumA 0.65 OH686_19190 quinolinate synthetase complex, A subunit low > 80
Pseudomonas syringae pv. syringae B728a ΔmexB 0.38 Psyr_3696 23S rRNA m(5)U-1939 methyltransferase 0.63 Psyr_1542 quinolinate synthetase low > 86
Pseudomonas fluorescens FW300-N1B4 0.38 Pf1N1B4_3507 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 0.66 Pf1N1B4_626 Quinolinate synthetase (EC 2.5.1.72) low > 87
Pseudomonas fluorescens FW300-N2C3 0.38 AO356_19055 23S rRNA methyltransferase 0.66 AO356_18145 quinolinate synthase A low > 104
Pseudomonas sp. SVBP6 0.38 COO64_RS07330 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.65 COO64_RS20215 nadA quinolinate synthase NadA low > 93
Pseudomonas sp. RS175 0.37 PFR28_03224 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.66 PFR28_03388 Quinolinate synthase A low > 88
Marinobacter adhaerens HP15 0.37 HP15_790 23S rRNA 5-methyluridine methyltransferase 0.68 HP15_2032 quinolinate synthetase complex, A subunit — —
Pseudomonas fluorescens GW456-L13 0.37 PfGW456L13_2033 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 0.66 PfGW456L13_1863 Quinolinate synthetase (EC 2.5.1.72) low > 87
Pseudomonas putida KT2440 0.36 PP_1655 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.67 PP_1231 quinolinate synthase [4Fe-4S] cluster subunit low > 96
Pseudomonas sp. BP01 0.36 JOY50_RS23905 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.67 JOY50_RS01740 nadA quinolinate synthase NadA low > 84
Pseudomonas fluorescens FW300-N2E3 0.36 AO353_02715 23S rRNA methyltransferase 0.66 AO353_03525 quinolinate synthase A low > 101
Acinetobacter radioresistens SK82 0.35 MPMX26_00538 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.64 MPMX26_02602 Quinolinate synthase A low > 36
Rhodanobacter denitrificans MT42 0.34 LRK55_RS16715 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.22 LRK55_RS13615 quinolinate synthase NadA low > 63
Acinetobacter baumannii LAC-4 0.34 RR41_RS16085 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.66 RR41_RS15700 quinolinate synthase NadA low > 55
Rhodanobacter sp000427505 FW510-R12 0.34 LRK53_RS11940 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.23 LRK53_RS14710 quinolinate synthase NadA low > 59
Rhodanobacter denitrificans FW104-10B01 0.34 LRK54_RS17000 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.22 LRK54_RS13900 quinolinate synthase NadA low > 59
Rhodanobacter sp. FW510-T8 0.34 OKGIIK_07840 rlmD 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.21 OKGIIK_00930 nadA quinolinate synthase NadA low > 53
Alteromonas macleodii MIT1002 0.32 MIT1002_00793 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.72 MIT1002_01344 Quinolinate synthase A — —
Castellaniella sp019104865 MT123 0.32 ABCV34_RS03050 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.53 ABCV34_RS03700 quinolinate synthase NadA low > 48
Dechlorosoma suillum PS 0.31 Dsui_1981 23S rRNA (uracil-5-)-methyltransferase RumA 0.14 Dsui_1043 quinolinate synthetase complex, A subunit — —
Ralstonia sp. UNC404CL21Col 0.30 ABZR87_RS10885 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.59 ABZR87_RS00355 quinolinate synthase NadA low > 80
Herbaspirillum seropedicae SmR1 0.30 HSERO_RS14825 23S rRNA methyltransferase 0.59 HSERO_RS11065 quinolinate synthetase low > 78
Cupriavidus basilensis FW507-4G11 0.29 RR42_RS13170 23S rRNA methyltransferase 0.59 RR42_RS17020 quinolinate synthetase low > 128
Burkholderia phytofirmans PsJN 0.29 BPHYT_RS09125 23S rRNA methyltransferase 0.59 BPHYT_RS15650 quinolinate synthetase low > 109
Paraburkholderia bryophila 376MFSha3.1 0.29 H281DRAFT_00846 23S rRNA m(5)U-1939 methyltransferase 0.57 H281DRAFT_04071 quinolinate synthetase low > 103
Ralstonia solanacearum IBSBF1503 0.29 RALBFv3_RS15245 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.58 RALBFv3_RS04735 quinolinate synthase NadA low > 76
Ralstonia solanacearum UW163 0.29 UW163_RS12710 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.58 UW163_RS08935 quinolinate synthase NadA — —
Paraburkholderia sabiae LMG 24235 0.29 QEN71_RS22225 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.58 QEN71_RS03060 quinolinate synthase NadA low > 153
Ralstonia solanacearum GMI1000 0.29 RS_RS06055 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.58 RS_RS12295 quinolinate synthase low > 80
Ralstonia solanacearum PSI07 0.28 RPSI07_RS18130 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.58 RPSI07_RS12650 quinolinate synthase NadA low > 81
Acidovorax sp. GW101-3H11 0.28 Ac3H11_2847 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) 0.55 Ac3H11_3837 Quinolinate synthetase (EC 2.5.1.72) low > 79
Variovorax sp. SCN45 0.27 GFF2841 23S rRNA (uracil(1939)-C(5))-methyltransferase (EC 2.1.1.190) 0.55 GFF2575 Quinolinate synthetase (EC 2.5.1.72) low > 127
Hydrogenophaga sp. GW460-11-11-14-LB1 0.27 GFF3883 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) 0.56 GFF1216 Quinolinate synthetase (EC 2.5.1.72) low > 90
Synechocystis sp000284455 PCC 6803 0.21 SGL_RS06135 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.32 SGL_RS17340 quinolinate synthase NadA low > 52
Synechococcus elongatus PCC 7942 0.21 Synpcc7942_0241 rumA 23S rRNA (uracil-5-)-methyltransferase RumA 0.33 Synpcc7942_1448 nadA quinolinate synthetase low > 38
Fusobacterium nucleatum SB010 0.19 HUW76_01255 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.26 HUW76_10740 quinolinate synthase NadA low > 35
Mucilaginibacter yixingensis YX-36 DSM 26809 0.17 ABZR88_RS21250 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.36 ABZR88_RS20650 quinolinate synthase NadA — —
Agrobacterium fabrum C58 0.17 Atu0735 RNA methyltransferase 0.23 Atu4098 quinolinate synthetase low > 89
Phocaeicola dorei CL03T12C01 0.17 ABI39_RS17490 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.38 ABI39_RS05755 quinolinate synthase NadA — —
Rhizobium sp. OAE497 0.17 ABIE40_RS03880 class I SAM-dependent RNA methyltransferase 0.23 ABIE40_RS23255 quinolinate synthase NadA low > 107
Bacteroides thetaiotaomicron VPI-5482 0.17 BT0643 RNA methyltransferase (NCBI ptt file) 0.37 BT3164 quinolinate synthetase A (NCBI ptt file) low > 81
Bacteroides stercoris CC31F 0.17 HMPREF1181_RS16525 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.37 HMPREF1181_RS01920 quinolinate synthase NadA — —
Magnetospirillum magneticum AMB-1 0.17 AMB_RS01660 class I SAM-dependent RNA methyltransferase 0.36 AMB_RS19660 quinolinate synthase NadA — —
Phocaeicola vulgatus CL09T03C04 0.17 HMPREF1058_RS03720 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.37 HMPREF1058_RS11230 quinolinate synthase NadA — —
Sinorhizobium meliloti 1021 0.16 SMc00974 RNA methyltransferase 0.22 SMc02601 quinolinate synthetase low > 103
Caulobacter crescentus NA1000 0.16 CCNA_01387 tRNA (uracil-5-)-methyltransferase related protein 0.23 CCNA_03006 quinolinate synthetase A — —
Caulobacter crescentus NA1000 Δfur 0.16 CCNA_01387 tRNA (uracil-5-)-methyltransferase related protein 0.23 CCNA_03006 quinolinate synthetase A — —
Pedobacter sp. GW460-11-11-14-LB5 0.16 CA265_RS25340 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.35 CA265_RS21180 quinolinate synthase — —
Xanthobacter sp. DMC5 0.16 GFF893 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.22 GFF1847 Quinolinate synthase A — —
Rhodopseudomonas palustris CGA009 0.16 TX73_004885 methyltransferase 0.23 TX73_005425 quinolinate synthase NadA — —
Azospirillum brasilense Sp245 0.15 AZOBR_RS01195 RNA methyltransferase 0.23 AZOBR_RS18690 quinolinate synthetase low > 97
Phaeobacter inhibens DSM 17395 0.15 PGA1_c34810 putative RNA methyltransferase 0.23 PGA1_c27790 quinolinate synthetase A low > 62
Bifidobacterium breve UCC2003 0.15 BBR_RS16615 class I SAM-dependent RNA methyltransferase 0.19 BBR_RS16730 quinolinate synthase NadA low > 34
Brevundimonas sp. GW460-12-10-14-LB2 0.14 A4249_RS08425 class I SAM-dependent RNA methyltransferase 0.23 A4249_RS00620 quinolinate synthase NadA low > 48
Azospirillum sp. SherDot2 0.14 MPMX19_02196 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD 0.23 MPMX19_05670 Quinolinate synthase A low > 112
Sphingomonas koreensis DSMZ 15582 0.14 Ga0059261_0648 SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase 0.37 Ga0059261_0051 quinolinate synthetase (EC 2.5.1.72) — —
Rhodospirillum rubrum S1H 0.14 Rru_A2107 23S rRNA (uracil-5-)-methyltransferase RumA (NCBI) 0.22 Rru_A1434 Quinolinate synthetase A (NCBI) — —
Sphingobium sp. HT1-2 0.12 GFF99 23S rRNA (uracil(1939)-C(5))-methyltransferase (EC 2.1.1.190) 0.37 GFF246 Quinolinate synthetase (EC 2.5.1.72) low > 95
Mycobacterium tuberculosis H37Rv 0.10 Rv2689c Conserved alanine and valine and glycine rich protein 0.22 Rv1594 Probable quinolinate synthetase NadA — —

Not shown: 13 genomes with orthologs for CSW01_12410 only; 7 genomes with orthologs for CSW01_09180 only