Conservation of cofitness between CSW01_03705 and CSW01_03875 in Vibrio cholerae E7946 ATCC 55056

104 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_03705 chaperone protein ClpB 1.0 CSW01_03875 tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ 0.61 2
Shewanella amazonensis SB2B 0.80 Sama_2603 clpB protein (RefSeq) 0.58 Sama_1290 RNA methyltransferase (RefSeq) low > 62
Shewanella oneidensis MR-1 0.80 SO3577 clpB clpB protein (NCBI ptt file) 0.61 SO2261 RNA methyltransferase, TrmH family, group 1 (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.80 Shewana3_3169 ATPase (RefSeq) 0.61 Shewana3_2283 RNA methyltransferase (RefSeq) low > 73
Shewanella loihica PV-4 0.80 Shew_2948 ATPase (RefSeq) 0.59 Shew_2320 RNA methyltransferase (RefSeq) low > 60
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.78 GFF4184 ClpB protein 0.65 GFF2437 tRNA:Cm32/Um32 methyltransferase low > 78
Alteromonas macleodii MIT1002 0.78 MIT1002_02677 Heat shock protein F84.1 0.64 MIT1002_02806 tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ low > 70
Enterobacter asburiae PDN3 0.78 EX28DRAFT_2693 ATP-dependent chaperone ClpB 0.66 EX28DRAFT_0107 RNA methyltransferase, TrmH family, group 1 low > 76
Enterobacter sp. TBS_079 0.78 MPMX20_03461 Chaperone protein ClpB 0.65 MPMX20_03413 tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ low > 85
Dickeya dianthicola ME23 0.78 DZA65_RS17320 ATP-dependent chaperone ClpB 0.63 DZA65_RS16730 tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 0.78 OHPLBJKB_01114 Chaperone protein ClpB 0.64 OHPLBJKB_01177 'tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ' transl_table=11 low > 74
Escherichia coli ECRC98 0.78 JDDGAC_24930 clpB ATP-dependent chaperone ClpB 0.64 JDDGAC_25285 trmJ tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ low > 87
Escherichia coli ECRC100 0.78 OKFHMN_21265 clpB ATP-dependent chaperone ClpB 0.64 OKFHMN_21610 trmJ tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ low > 79
Escherichia coli ECRC102 0.78 NIAGMN_19035 clpB ATP-dependent chaperone ClpB 0.64 NIAGMN_19380 trmJ tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ low > 80
Escherichia coli ECRC99 0.78 KEDOAH_06955 clpB ATP-dependent chaperone ClpB 0.64 KEDOAH_06610 trmJ tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ
Escherichia coli ECOR27 0.78 NOLOHH_12940 clpB ATP-dependent chaperone ClpB 0.64 NOLOHH_13280 trmJ tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ low > 76
Escherichia coli ECRC101 0.78 MCAODC_11795 clpB ATP-dependent chaperone ClpB 0.64 MCAODC_12140 trmJ tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ low > 87
Klebsiella michiganensis M5al 0.78 BWI76_RS21440 ATP-dependent chaperone ClpB 0.65 BWI76_RS21170 tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ low > 92
Klebsiella pneumoniae MKP103 0.78 KDGMDA_02125 ATP-dependent chaperone ClpB 0.65 KDGMDA_28295 tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ low > 95
Escherichia coli ECRC62 0.78 BNILDI_11745 clpB ATP-dependent chaperone ClpB 0.64 BNILDI_12080 trmJ tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ low > 75
Escherichia coli BL21 0.78 ECD_02482 protein disaggregation chaperone 0.64 ECD_02424 tRNA mC32,mU32 2'-O-methyltransferase, SAM-dependent low > 61
Escherichia fergusonii Becca 0.78 EFB2_01298 Chaperone protein ClpB 0.64 EFB2_01358 tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ low > 86
Escherichia coli BW25113 0.78 b2592 clpB protein disaggregation chaperone (NCBI) 0.64 b2532 yfhQ predicted methyltransferase (NCBI) low > 76
Escherichia coli ECOR38 0.78 HEPCGN_20390 clpB ATP-dependent chaperone ClpB 0.63 HEPCGN_20750 trmJ tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ low > 88
Escherichia coli Nissle 1917 0.78 ECOLIN_RS14665 ATP-dependent chaperone ClpB 0.64 ECOLIN_RS14375 tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ
Dickeya dianthicola 67-19 0.78 HGI48_RS16225 ATP-dependent chaperone ClpB 0.63 HGI48_RS15655 tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ low > 71
Pectobacterium carotovorum WPP14 0.77 HER17_RS05410 ATP-dependent chaperone ClpB 0.64 HER17_RS06005 tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ low > 75
Dickeya dadantii 3937 0.77 DDA3937_RS16100 ATP-dependent chaperone ClpB 0.63 DDA3937_RS15555 tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ low > 74
Serratia liquefaciens MT49 0.77 IAI46_03995 ATP-dependent chaperone ClpB 0.64 IAI46_19365 tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ low > 87
Pantoea agglomerans CFBP13505 P0401 0.77 PagCFBP13505_RS16530 ATP-dependent chaperone ClpB 0.60 PagCFBP13505_RS14885 tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ low > 74
Pantoea sp. MT58 0.77 IAI47_04435 ATP-dependent chaperone ClpB 0.60 IAI47_04995 tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ low > 76
Rahnella sp. WP5 0.76 EX31_RS07560 ATP-dependent chaperone ClpB 0.64 EX31_RS20555 tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ low > 89
Erwinia amylovora T8 0.76 OLJFJH_09740 ATP-dependent chaperone ClpB 0.60 OLJFJH_10355 tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ low > 58
Erwinia tracheiphila HP pepo 2.2 0.76 IJEDHG_26855 clpB ATP-dependent chaperone ClpB 0.61 IJEDHG_02880 trmJ tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ low > 61
Erwinia tracheiphila SCR3 0.76 LU632_RS16935 clpB ATP-dependent chaperone ClpB 0.61 LU632_RS17880 trmJ tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ low > 73
Marinobacter adhaerens HP15 0.74 HP15_529 protein disaggregation chaperone 0.46 HP15_1484 RNA methyltransferase, TrmH family, group 1 low > 73
Kangiella aquimarina DSM 16071 0.74 B158DRAFT_2535 ATP-dependent chaperone ClpB 0.46 B158DRAFT_1456 RNA methyltransferase, TrmH family, group 1 low > 40
Pseudomonas sp. SVBP6 0.72 COO64_RS11065 clpB ATP-dependent chaperone ClpB 0.49 COO64_RS03880 trmJ tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ low > 93
Lysobacter sp. OAE881 0.72 ABIE51_RS04925 ATP-dependent chaperone ClpB 0.44 ABIE51_RS14985 RNA methyltransferase low > 62
Pseudomonas sp. RS175 0.71 PFR28_03746 Chaperone protein ClpB 0.52 PFR28_00283 'tRNA (cytidine/uridine/adenosine-2'-O-)-methyltransferase TrmJ' transl_table=11 low > 88
Pseudomonas fluorescens FW300-N2C3 0.71 AO356_15935 ATP-dependent chaperone ClpB 0.53 AO356_06660 RNA methyltransferase low > 104
Pseudomonas fluorescens FW300-N2E2 0.71 Pf6N2E2_5129 ClpB protein 0.53 Pf6N2E2_3192 tRNA:Cm32/Um32 methyltransferase low > 103
Pseudomonas fluorescens FW300-N1B4 0.71 Pf1N1B4_2824 ClpB protein 0.52 Pf1N1B4_868 tRNA:Cm32/Um32 methyltransferase low > 87
Pseudomonas orientalis W4I3 0.71 QF045_RS06815 ATP-dependent chaperone ClpB 0.52 QF045_RS25435 tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ low > 93
Pseudomonas sp. S08-1 0.71 OH686_16420 ATP-dependent chaperone protein ClpB 0.48 OH686_17460 tRNA (cytidine(32)/uridine(32)-2'-O)-methyltransferase low > 80
Pseudomonas lactucae CFBP13502 0.71 GEMAOFIL_00971 Chaperone protein ClpB 0.51 GEMAOFIL_04795 'tRNA (cytidine/uridine/adenosine-2'-O-)-methyltransferase TrmJ' transl_table=11 low > 96
Pseudomonas fluorescens SBW25-INTG 0.71 PFLU_RS03880 ATP-dependent chaperone ClpB 0.51 PFLU_RS24870 tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ 0.30 108
Pseudomonas aeruginosa PUPa3 0.71 DQ20_RS56205 clpB;go_function=ATP ATP-dependent chaperone ClpB 0.49 DQ20_RS43265 trmJ;go_function=RNA tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ low > 101
Pseudomonas fluorescens SBW25 0.71 PFLU_RS03880 ATP-dependent chaperone ClpB 0.51 PFLU_RS24870 tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ low > 109
Pseudomonas aeruginosa PA14 0.71 IKLFDK_00820 Chaperone protein ClpB 0.49 IKLFDK_19655 tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ low > 98
Pseudomonas simiae WCS417 0.71 PS417_03830 protein disaggregation chaperone 0.51 PS417_23215 RNA methyltransferase low > 88
Pseudomonas fluorescens GW456-L13 0.71 PfGW456L13_1495 ClpB protein 0.52 PfGW456L13_4876 tRNA:Cm32/Um32 methyltransferase low > 87
Pseudomonas stutzeri RCH2 0.71 Psest_0711 ATP-dependent chaperone ClpB 0.47 Psest_1248 RNA methyltransferase, TrmH family, group 1 low > 67
Pseudomonas aeruginosa MRSN321 0.71 DY961_RS23740 clpB;go_function=ATP ATP-dependent chaperone ClpB 0.49 DY961_RS13835 trmJ;go_function=RNA tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ low > 100
Pseudomonas syringae pv. syringae B728a ΔmexB 0.70 Psyr_0728 AAA ATPase, central region:Clp, N terminal:Clp, N terminal 0.51 Psyr_1234 RNA methyltransferase TrmH, group 1 low > 86
Pseudomonas syringae pv. syringae B728a 0.70 Psyr_0728 AAA ATPase, central region:Clp, N terminal:Clp, N terminal 0.51 Psyr_1234 RNA methyltransferase TrmH, group 1 low > 86
Pseudomonas fluorescens FW300-N2E3 0.70 AO353_14230 ATP-dependent chaperone ClpB 0.52 AO353_15820 RNA methyltransferase low > 101
Xanthomonas campestris pv. campestris strain 8004 0.70 Xcc-8004.1382.1 ClpB protein 0.37 Xcc-8004.2282.1 tRNA:Cm32/Um32 methyltransferase low > 74
Pseudomonas sp. BP01 0.70 JOY50_RS27140 clpB ATP-dependent chaperone ClpB 0.48 JOY50_RS22835 trmJ tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ low > 84
Pseudomonas sp. DMC3 0.70 GFF4006 Chaperone protein ClpB 0.51 GFF4353 tRNA (cytidine/uridine/adenosine-2'-O-)-methyltransferase TrmJ low > 89
Pseudomonas putida KT2440 0.70 PP_0625 Chaperone protein ClpB 0.49 PP_0839 tRNA Cm32/Um32 methyltransferase low > 96
Dyella japonica UNC79MFTsu3.2 0.70 ABZR86_RS10940 ATP-dependent chaperone ClpB 0.31 ABZR86_RS19895 RNA methyltransferase low > 74
Pseudomonas segetis P6 0.70 MPMX49_03920 Chaperone protein ClpB 0.47 MPMX49_01504 tRNA (cytidine/uridine/adenosine-2'-O-)-methyltransferase TrmJ low > 75
Rhodanobacter sp000427505 FW510-R12 0.69 LRK53_RS05055 ATP-dependent chaperone ClpB 0.37 LRK53_RS15630 RNA methyltransferase low > 59
Rhodanobacter denitrificans MT42 0.69 LRK55_RS04735 ATP-dependent chaperone ClpB 0.37 LRK55_RS12670 RNA methyltransferase low > 63
Rhodanobacter sp. FW510-T8 0.69 OKGIIK_01800 clpB ATP-dependent chaperone ClpB 0.37 OKGIIK_02340 trmJ RNA methyltransferase low > 53
Rhodanobacter denitrificans FW104-10B01 0.69 LRK54_RS04955 ATP-dependent chaperone ClpB 0.36 LRK54_RS12970 RNA methyltransferase low > 59
Methylophilus sp. DMC18 0.68 GFF1788 Chaperone protein ClpB 0.39 GFF437 tRNA (cytidine/uridine/adenosine-2'-O-)-methyltransferase TrmJ low > 43
Dechlorosoma suillum PS 0.67 Dsui_2161 ATP-dependent chaperone ClpB 0.39 Dsui_2367 RNA methyltransferase, TrmH family, group 1 low > 51
Paraburkholderia bryophila 376MFSha3.1 0.67 H281DRAFT_00817 ATP-dependent Clp protease ATP-binding subunit ClpB 0.37 H281DRAFT_00540 tRNA/rRNA methyltransferase low > 103
Paraburkholderia graminis OAS925 0.67 ABIE53_002033 ATP-dependent Clp protease ATP-binding subunit ClpB 0.36 ABIE53_002713 tRNA/rRNA methyltransferase low > 113
Paraburkholderia sabiae LMG 24235 0.67 QEN71_RS22370 ATP-dependent chaperone ClpB 0.35 QEN71_RS06100 RNA methyltransferase low > 153
Burkholderia phytofirmans PsJN 0.67 BPHYT_RS08990 protein disaggregation chaperone 0.34 BPHYT_RS12460 RNA methyltransferase low > 109
Ralstonia solanacearum PSI07 0.65 RPSI07_RS17450 ATP-dependent chaperone ClpB 0.33 RPSI07_RS18405 RNA methyltransferase low > 81
Ralstonia solanacearum IBSBF1503 0.65 RALBFv3_RS00030 ATP-dependent chaperone ClpB 0.32 RALBFv3_RS14970 RNA methyltransferase low > 76
Ralstonia solanacearum UW163 0.65 UW163_RS13360 ATP-dependent chaperone ClpB 0.32 UW163_RS12440 RNA methyltransferase
Ralstonia sp. UNC404CL21Col 0.65 ABZR87_RS11485 ATP-dependent chaperone ClpB 0.31 ABZR87_RS10615 RNA methyltransferase low > 80
Ralstonia solanacearum GMI1000 0.65 RS_RS06695 chaperone protein ClpB 0.33 RS_RS05785 RNA methyltransferase low > 80
Acidovorax sp. GW101-3H11 0.65 Ac3H11_1474 ClpB protein 0.27 Ac3H11_3646 tRNA:Cm32/Um32 methyltransferase low > 79
Herbaspirillum seropedicae SmR1 0.65 HSERO_RS10545 protein disaggregation chaperone 0.37 HSERO_RS08585 RNA methyltransferase low > 78
Hydrogenophaga sp. GW460-11-11-14-LB1 0.64 GFF3942 ClpB protein 0.28 GFF3650 tRNA:Cm32/Um32 methyltransferase
Acinetobacter radioresistens SK82 0.64 MPMX26_01096 Chaperone protein ClpB 0.36 MPMX26_01876 tRNA (cytidine/uridine/adenosine-2'-O-)-methyltransferase TrmJ low > 36
Acinetobacter baumannii LAC-4 0.63 RR41_RS10060 ATP-dependent chaperone ClpB 0.38 RR41_RS11515 RNA methyltransferase low > 55
Variovorax sp. SCN45 0.63 GFF2792 Chaperone protein ClpB (ATP-dependent unfoldase) 0.28 GFF4680 tRNA (cytidine(32)/uridine(32)-2'-O)-methyltransferase (EC 2.1.1.200) low > 127
Variovorax sp. OAS795 0.63 ABID97_RS10930 ATP-dependent chaperone ClpB 0.28 ABID97_RS20730 RNA methyltransferase low > 91
Castellaniella sp019104865 MT123 0.62 ABCV34_RS06205 ATP-dependent chaperone ClpB 0.31 ABCV34_RS00355 RNA methyltransferase low > 48
Azospirillum sp. SherDot2 0.58 MPMX19_02442 Chaperone protein ClpB 0.23 MPMX19_02031 tRNA (cytidine/uridine/adenosine-2'-O-)-methyltransferase TrmJ low > 112
Azospirillum brasilense Sp245 0.58 AZOBR_RS18950 ATPase AAA 0.23 AZOBR_RS04270 RNA methyltransferase low > 97
Rhizobium sp. OAE497 0.57 ABIE40_RS17260 ATP-dependent chaperone ClpB 0.24 ABIE40_RS10270 RNA methyltransferase low > 107
Agrobacterium fabrum C58 0.56 Atu4177 ATP-dependent Clp protease, ATP-binding subunit 0.22 Atu1868 tRNA/rRNA methyltransferase low > 89
Brevundimonas sp. GW460-12-10-14-LB2 0.56 A4249_RS11010 ATP-dependent chaperone ClpB 0.21 A4249_RS10425 RNA methyltransferase low > 48
Sphingomonas koreensis DSMZ 15582 0.56 Ga0059261_1434 ATP-dependent chaperone ClpB 0.21 Ga0059261_1984 rRNA methylase low > 68
Bosea sp. OAE506 0.56 ABIE41_RS23785 ATP-dependent chaperone ClpB 0.21 ABIE41_RS13540 RNA methyltransferase low > 77
Caulobacter crescentus NA1000 0.56 CCNA_00922 ClpB protein 0.25 CCNA_02605 LasT-family rRNA methylase low > 66
Caulobacter crescentus NA1000 Δfur 0.56 CCNA_00922 ClpB protein 0.25 CCNA_02605 LasT-family rRNA methylase low > 67
Rhodospirillum rubrum S1H 0.56 Rru_A0753 Chaperone clpB (NCBI) 0.25 Rru_A0696 RNA methyltransferase TrmH, group 1 (NCBI) low > 58
Sinorhizobium meliloti 1021 0.55 SMc02433 ATP-dependent protease 0.24 SMc00482 hypothetical protein low > 103
Synechocystis sp000284455 PCC 6803 0.55 SGL_RS11615 ATP-dependent chaperone ClpB 0.27 SGL_RS15835 TrmJ/YjtD family RNA methyltransferase low > 52
Synechococcus elongatus PCC 7942 0.55 Synpcc7942_1089 clpB ATPase 0.19 Synpcc7942_1602 RNA methyltransferase TrmH, group 1 low > 38
Dinoroseobacter shibae DFL-12 0.55 Dshi_0617 ATPase AAA-2 domain protein (RefSeq) 0.20 Dshi_1513 tRNA/rRNA methyltransferase (SpoU) (RefSeq) low > 64
Phaeobacter inhibens DSM 17395 0.55 PGA1_c32440 chaperone protein ClpB 0.22 PGA1_c15100 tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ low > 62
Magnetospirillum magneticum AMB-1 0.55 AMB_RS07865 ATP-dependent chaperone ClpB 0.23 AMB_RS10750 RNA methyltransferase low > 64
Xanthobacter sp. DMC5 0.54 GFF3670 Chaperone protein ClpB 0.23 GFF1164 tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ
Desulfovibrio vulgaris Miyazaki F 0.54 DvMF_0567 ATP-dependent chaperone ClpB (RefSeq) 0.25 DvMF_1155 RNA methyltransferase, TrmH family, group 1 (RefSeq) low > 51
Desulfovibrio vulgaris Hildenborough JW710 0.54 DVU1874 clpB ATP-dependent Clp protease, ATP-binding subunit ClpB (TIGR) 0.22 DVU2737 RNA methyltransferase, TrmH family (TIGR) low > 55

Not shown: 17 genomes with orthologs for CSW01_03705 only; 2 genomes with orthologs for CSW01_03875 only