Conservation of cofitness between CSW01_03875 and CSW01_03705 in Vibrio cholerae E7946 ATCC 55056

104 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_03875 tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ 1.0 CSW01_03705 chaperone protein ClpB 0.61 2
Enterobacter asburiae PDN3 0.66 EX28DRAFT_0107 RNA methyltransferase, TrmH family, group 1 0.78 EX28DRAFT_2693 ATP-dependent chaperone ClpB low > 76
Enterobacter sp. TBS_079 0.65 MPMX20_03413 tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ 0.78 MPMX20_03461 Chaperone protein ClpB low > 85
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.65 GFF2437 tRNA:Cm32/Um32 methyltransferase 0.78 GFF4184 ClpB protein low > 78
Klebsiella michiganensis M5al 0.65 BWI76_RS21170 tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ 0.78 BWI76_RS21440 ATP-dependent chaperone ClpB low > 92
Klebsiella pneumoniae MKP103 0.65 KDGMDA_28295 tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ 0.78 KDGMDA_02125 ATP-dependent chaperone ClpB low > 95
Alteromonas macleodii MIT1002 0.64 MIT1002_02806 tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ 0.78 MIT1002_02677 Heat shock protein F84.1 low > 70
Rahnella sp. WP5 0.64 EX31_RS20555 tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ 0.76 EX31_RS07560 ATP-dependent chaperone ClpB low > 89
Serratia liquefaciens MT49 0.64 IAI46_19365 tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ 0.77 IAI46_03995 ATP-dependent chaperone ClpB low > 87
Escherichia coli ECRC102 0.64 NIAGMN_19380 trmJ tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ 0.78 NIAGMN_19035 clpB ATP-dependent chaperone ClpB low > 80
Escherichia coli ECRC98 0.64 JDDGAC_25285 trmJ tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ 0.78 JDDGAC_24930 clpB ATP-dependent chaperone ClpB low > 87
Escherichia coli ECRC62 0.64 BNILDI_12080 trmJ tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ 0.78 BNILDI_11745 clpB ATP-dependent chaperone ClpB low > 75
Escherichia coli ECRC100 0.64 OKFHMN_21610 trmJ tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ 0.78 OKFHMN_21265 clpB ATP-dependent chaperone ClpB low > 79
Escherichia coli ECRC99 0.64 KEDOAH_06610 trmJ tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ 0.78 KEDOAH_06955 clpB ATP-dependent chaperone ClpB
Escherichia coli ECRC101 0.64 MCAODC_12140 trmJ tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ 0.78 MCAODC_11795 clpB ATP-dependent chaperone ClpB low > 87
Escherichia coli Nissle 1917 0.64 ECOLIN_RS14375 tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ 0.78 ECOLIN_RS14665 ATP-dependent chaperone ClpB
Escherichia coli BL21 0.64 ECD_02424 tRNA mC32,mU32 2'-O-methyltransferase, SAM-dependent 0.78 ECD_02482 protein disaggregation chaperone 0.58 29
Escherichia coli HS(pFamp)R (ATCC 700891) 0.64 OHPLBJKB_01177 'tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ' transl_table=11 0.78 OHPLBJKB_01114 Chaperone protein ClpB low > 74
Escherichia fergusonii Becca 0.64 EFB2_01358 tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ 0.78 EFB2_01298 Chaperone protein ClpB 0.45 74
Escherichia coli ECOR27 0.64 NOLOHH_13280 trmJ tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ 0.78 NOLOHH_12940 clpB ATP-dependent chaperone ClpB low > 76
Pectobacterium carotovorum WPP14 0.64 HER17_RS06005 tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ 0.77 HER17_RS05410 ATP-dependent chaperone ClpB low > 75
Escherichia coli BW25113 0.64 b2532 yfhQ predicted methyltransferase (NCBI) 0.78 b2592 clpB protein disaggregation chaperone (NCBI) low > 76
Dickeya dianthicola ME23 0.63 DZA65_RS16730 tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ 0.78 DZA65_RS17320 ATP-dependent chaperone ClpB low > 75
Escherichia coli ECOR38 0.63 HEPCGN_20750 trmJ tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ 0.78 HEPCGN_20390 clpB ATP-dependent chaperone ClpB low > 88
Dickeya dianthicola 67-19 0.63 HGI48_RS15655 tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ 0.78 HGI48_RS16225 ATP-dependent chaperone ClpB low > 71
Dickeya dadantii 3937 0.63 DDA3937_RS15555 tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ 0.77 DDA3937_RS16100 ATP-dependent chaperone ClpB low > 74
Shewanella oneidensis MR-1 0.61 SO2261 RNA methyltransferase, TrmH family, group 1 (NCBI ptt file) 0.80 SO3577 clpB clpB protein (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.61 Shewana3_2283 RNA methyltransferase (RefSeq) 0.80 Shewana3_3169 ATPase (RefSeq) low > 73
Erwinia tracheiphila HP pepo 2.2 0.61 IJEDHG_02880 trmJ tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ 0.76 IJEDHG_26855 clpB ATP-dependent chaperone ClpB low > 61
Erwinia tracheiphila SCR3 0.61 LU632_RS17880 trmJ tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ 0.76 LU632_RS16935 clpB ATP-dependent chaperone ClpB low > 73
Erwinia amylovora T8 0.60 OLJFJH_10355 tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ 0.76 OLJFJH_09740 ATP-dependent chaperone ClpB low > 58
Pantoea agglomerans CFBP13505 P0401 0.60 PagCFBP13505_RS14885 tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ 0.77 PagCFBP13505_RS16530 ATP-dependent chaperone ClpB low > 74
Pantoea sp. MT58 0.60 IAI47_04995 tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ 0.77 IAI47_04435 ATP-dependent chaperone ClpB low > 76
Shewanella loihica PV-4 0.59 Shew_2320 RNA methyltransferase (RefSeq) 0.80 Shew_2948 ATPase (RefSeq) low > 60
Shewanella amazonensis SB2B 0.58 Sama_1290 RNA methyltransferase (RefSeq) 0.80 Sama_2603 clpB protein (RefSeq) low > 62
Pseudomonas fluorescens FW300-N2C3 0.53 AO356_06660 RNA methyltransferase 0.71 AO356_15935 ATP-dependent chaperone ClpB low > 104
Pseudomonas fluorescens FW300-N2E2 0.53 Pf6N2E2_3192 tRNA:Cm32/Um32 methyltransferase 0.71 Pf6N2E2_5129 ClpB protein low > 103
Pseudomonas fluorescens FW300-N2E3 0.52 AO353_15820 RNA methyltransferase 0.70 AO353_14230 ATP-dependent chaperone ClpB low > 101
Pseudomonas fluorescens FW300-N1B4 0.52 Pf1N1B4_868 tRNA:Cm32/Um32 methyltransferase 0.71 Pf1N1B4_2824 ClpB protein low > 87
Pseudomonas sp. RS175 0.52 PFR28_00283 'tRNA (cytidine/uridine/adenosine-2'-O-)-methyltransferase TrmJ' transl_table=11 0.71 PFR28_03746 Chaperone protein ClpB 0.28 66
Pseudomonas fluorescens GW456-L13 0.52 PfGW456L13_4876 tRNA:Cm32/Um32 methyltransferase 0.71 PfGW456L13_1495 ClpB protein low > 87
Pseudomonas orientalis W4I3 0.52 QF045_RS25435 tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ 0.71 QF045_RS06815 ATP-dependent chaperone ClpB low > 93
Pseudomonas sp. DMC3 0.51 GFF4353 tRNA (cytidine/uridine/adenosine-2'-O-)-methyltransferase TrmJ 0.70 GFF4006 Chaperone protein ClpB low > 89
Pseudomonas simiae WCS417 0.51 PS417_23215 RNA methyltransferase 0.71 PS417_03830 protein disaggregation chaperone low > 88
Pseudomonas fluorescens SBW25-INTG 0.51 PFLU_RS24870 tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ 0.71 PFLU_RS03880 ATP-dependent chaperone ClpB 0.30 2
Pseudomonas fluorescens SBW25 0.51 PFLU_RS24870 tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ 0.71 PFLU_RS03880 ATP-dependent chaperone ClpB low > 109
Pseudomonas syringae pv. syringae B728a ΔmexB 0.51 Psyr_1234 RNA methyltransferase TrmH, group 1 0.70 Psyr_0728 AAA ATPase, central region:Clp, N terminal:Clp, N terminal low > 86
Pseudomonas syringae pv. syringae B728a 0.51 Psyr_1234 RNA methyltransferase TrmH, group 1 0.70 Psyr_0728 AAA ATPase, central region:Clp, N terminal:Clp, N terminal low > 86
Pseudomonas lactucae CFBP13502 0.51 GEMAOFIL_04795 'tRNA (cytidine/uridine/adenosine-2'-O-)-methyltransferase TrmJ' transl_table=11 0.71 GEMAOFIL_00971 Chaperone protein ClpB low > 96
Pseudomonas sp. SVBP6 0.49 COO64_RS03880 trmJ tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ 0.72 COO64_RS11065 clpB ATP-dependent chaperone ClpB low > 93
Pseudomonas aeruginosa PA14 0.49 IKLFDK_19655 tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ 0.71 IKLFDK_00820 Chaperone protein ClpB low > 98
Pseudomonas putida KT2440 0.49 PP_0839 tRNA Cm32/Um32 methyltransferase 0.70 PP_0625 Chaperone protein ClpB low > 96
Pseudomonas aeruginosa MRSN321 0.49 DY961_RS13835 trmJ;go_function=RNA tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ 0.71 DY961_RS23740 clpB;go_function=ATP ATP-dependent chaperone ClpB low > 100
Pseudomonas aeruginosa PUPa3 0.49 DQ20_RS43265 trmJ;go_function=RNA tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ 0.71 DQ20_RS56205 clpB;go_function=ATP ATP-dependent chaperone ClpB low > 101
Pseudomonas sp. S08-1 0.48 OH686_17460 tRNA (cytidine(32)/uridine(32)-2'-O)-methyltransferase 0.71 OH686_16420 ATP-dependent chaperone protein ClpB low > 80
Pseudomonas sp. BP01 0.48 JOY50_RS22835 trmJ tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ 0.70 JOY50_RS27140 clpB ATP-dependent chaperone ClpB low > 84
Pseudomonas stutzeri RCH2 0.47 Psest_1248 RNA methyltransferase, TrmH family, group 1 0.71 Psest_0711 ATP-dependent chaperone ClpB low > 67
Pseudomonas segetis P6 0.47 ACVTMO_RS07450 trmJ tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ 0.70 ACVTMO_RS19430 clpB ATP-dependent chaperone ClpB low > 75
Marinobacter adhaerens HP15 0.46 HP15_1484 RNA methyltransferase, TrmH family, group 1 0.74 HP15_529 protein disaggregation chaperone low > 73
Kangiella aquimarina DSM 16071 0.46 B158DRAFT_1456 RNA methyltransferase, TrmH family, group 1 0.74 B158DRAFT_2535 ATP-dependent chaperone ClpB low > 40
Lysobacter sp. OAE881 0.44 ABIE51_RS14985 RNA methyltransferase 0.72 ABIE51_RS04925 ATP-dependent chaperone ClpB low > 62
Methylophilus sp. DMC18 0.39 GFF437 tRNA (cytidine/uridine/adenosine-2'-O-)-methyltransferase TrmJ 0.68 GFF1788 Chaperone protein ClpB low > 43
Dechlorosoma suillum PS 0.39 Dsui_2367 RNA methyltransferase, TrmH family, group 1 0.67 Dsui_2161 ATP-dependent chaperone ClpB low > 51
Acinetobacter baumannii LAC-4 0.38 RR41_RS11515 RNA methyltransferase 0.63 RR41_RS10060 ATP-dependent chaperone ClpB low > 55
Xanthomonas campestris pv. campestris strain 8004 0.37 Xcc-8004.2282.1 tRNA:Cm32/Um32 methyltransferase 0.70 Xcc-8004.1382.1 ClpB protein low > 74
Herbaspirillum seropedicae SmR1 0.37 HSERO_RS08585 RNA methyltransferase 0.65 HSERO_RS10545 protein disaggregation chaperone low > 78
Rhodanobacter sp. FW510-T8 0.37 OKGIIK_02340 trmJ RNA methyltransferase 0.69 OKGIIK_01800 clpB ATP-dependent chaperone ClpB low > 53
Paraburkholderia bryophila 376MFSha3.1 0.37 H281DRAFT_00540 tRNA/rRNA methyltransferase 0.67 H281DRAFT_00817 ATP-dependent Clp protease ATP-binding subunit ClpB low > 103
Rhodanobacter denitrificans MT42 0.37 LRK55_RS12670 RNA methyltransferase 0.69 LRK55_RS04735 ATP-dependent chaperone ClpB low > 63
Rhodanobacter sp000427505 FW510-R12 0.37 LRK53_RS15630 RNA methyltransferase 0.69 LRK53_RS05055 ATP-dependent chaperone ClpB low > 59
Acinetobacter radioresistens SK82 0.36 MPMX26_01876 tRNA (cytidine/uridine/adenosine-2'-O-)-methyltransferase TrmJ 0.64 MPMX26_01096 Chaperone protein ClpB low > 36
Paraburkholderia graminis OAS925 0.36 ABIE53_002713 tRNA/rRNA methyltransferase 0.67 ABIE53_002033 ATP-dependent Clp protease ATP-binding subunit ClpB low > 113
Rhodanobacter denitrificans FW104-10B01 0.36 LRK54_RS12970 RNA methyltransferase 0.69 LRK54_RS04955 ATP-dependent chaperone ClpB low > 59
Paraburkholderia sabiae LMG 24235 0.35 QEN71_RS06100 RNA methyltransferase 0.67 QEN71_RS22370 ATP-dependent chaperone ClpB low > 153
Burkholderia phytofirmans PsJN 0.34 BPHYT_RS12460 RNA methyltransferase 0.67 BPHYT_RS08990 protein disaggregation chaperone low > 109
Ralstonia solanacearum GMI1000 0.33 RS_RS05785 RNA methyltransferase 0.65 RS_RS06695 chaperone protein ClpB low > 80
Ralstonia solanacearum PSI07 0.33 RPSI07_RS18405 RNA methyltransferase 0.65 RPSI07_RS17450 ATP-dependent chaperone ClpB low > 81
Ralstonia solanacearum UW163 0.32 UW163_RS12440 RNA methyltransferase 0.65 UW163_RS13360 ATP-dependent chaperone ClpB
Ralstonia solanacearum IBSBF1503 0.32 RALBFv3_RS14970 RNA methyltransferase 0.65 RALBFv3_RS00030 ATP-dependent chaperone ClpB low > 76
Ralstonia sp. UNC404CL21Col 0.31 ABZR87_RS10615 RNA methyltransferase 0.65 ABZR87_RS11485 ATP-dependent chaperone ClpB low > 80
Castellaniella sp019104865 MT123 0.31 ABCV34_RS00355 RNA methyltransferase 0.62 ABCV34_RS06205 ATP-dependent chaperone ClpB low > 48
Dyella japonica UNC79MFTsu3.2 0.31 ABZR86_RS19895 RNA methyltransferase 0.70 ABZR86_RS10940 ATP-dependent chaperone ClpB low > 74
Variovorax sp. SCN45 0.28 GFF4680 tRNA (cytidine(32)/uridine(32)-2'-O)-methyltransferase (EC 2.1.1.200) 0.63 GFF2792 Chaperone protein ClpB (ATP-dependent unfoldase) low > 127
Variovorax sp. OAS795 0.28 ABID97_RS20730 RNA methyltransferase 0.63 ABID97_RS10930 ATP-dependent chaperone ClpB low > 91
Hydrogenophaga sp. GW460-11-11-14-LB1 0.28 GFF3650 tRNA:Cm32/Um32 methyltransferase 0.64 GFF3942 ClpB protein
Synechocystis sp000284455 PCC 6803 0.27 SGL_RS15835 TrmJ/YjtD family RNA methyltransferase 0.55 SGL_RS11615 ATP-dependent chaperone ClpB low > 52
Acidovorax sp. GW101-3H11 0.27 Ac3H11_3646 tRNA:Cm32/Um32 methyltransferase 0.65 Ac3H11_1474 ClpB protein low > 79
Rhodospirillum rubrum S1H 0.25 Rru_A0696 RNA methyltransferase TrmH, group 1 (NCBI) 0.56 Rru_A0753 Chaperone clpB (NCBI) low > 58
Desulfovibrio vulgaris Miyazaki F 0.25 DvMF_1155 RNA methyltransferase, TrmH family, group 1 (RefSeq) 0.54 DvMF_0567 ATP-dependent chaperone ClpB (RefSeq) low > 51
Caulobacter crescentus NA1000 Δfur 0.25 CCNA_02605 LasT-family rRNA methylase 0.56 CCNA_00922 ClpB protein low > 67
Caulobacter crescentus NA1000 0.25 CCNA_02605 LasT-family rRNA methylase 0.56 CCNA_00922 ClpB protein low > 66
Sinorhizobium meliloti 1021 0.24 SMc00482 hypothetical protein 0.55 SMc02433 ATP-dependent protease low > 103
Rhizobium sp. OAE497 0.24 ABIE40_RS10270 RNA methyltransferase 0.57 ABIE40_RS17260 ATP-dependent chaperone ClpB low > 107
Magnetospirillum magneticum AMB-1 0.23 AMB_RS10750 RNA methyltransferase 0.55 AMB_RS07865 ATP-dependent chaperone ClpB low > 64
Azospirillum brasilense Sp245 0.23 AZOBR_RS04270 RNA methyltransferase 0.58 AZOBR_RS18950 ATPase AAA low > 97
Xanthobacter sp. DMC5 0.23 GFF1164 tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ 0.54 GFF3670 Chaperone protein ClpB
Azospirillum sp. SherDot2 0.23 MPMX19_02031 tRNA (cytidine/uridine/adenosine-2'-O-)-methyltransferase TrmJ 0.58 MPMX19_02442 Chaperone protein ClpB low > 112
Phaeobacter inhibens DSM 17395 0.22 PGA1_c15100 tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ 0.55 PGA1_c32440 chaperone protein ClpB low > 62
Agrobacterium fabrum C58 0.22 Atu1868 tRNA/rRNA methyltransferase 0.56 Atu4177 ATP-dependent Clp protease, ATP-binding subunit low > 89
Desulfovibrio vulgaris Hildenborough JW710 0.22 DVU2737 RNA methyltransferase, TrmH family (TIGR) 0.54 DVU1874 clpB ATP-dependent Clp protease, ATP-binding subunit ClpB (TIGR) low > 55
Sphingomonas koreensis DSMZ 15582 0.21 Ga0059261_1984 rRNA methylase 0.56 Ga0059261_1434 ATP-dependent chaperone ClpB low > 68
Bosea sp. OAE506 0.21 ABIE41_RS13540 RNA methyltransferase 0.56 ABIE41_RS23785 ATP-dependent chaperone ClpB low > 77
Brevundimonas sp. GW460-12-10-14-LB2 0.21 A4249_RS10425 RNA methyltransferase 0.56 A4249_RS11010 ATP-dependent chaperone ClpB low > 48
Dinoroseobacter shibae DFL-12 0.20 Dshi_1513 tRNA/rRNA methyltransferase (SpoU) (RefSeq) 0.55 Dshi_0617 ATPase AAA-2 domain protein (RefSeq) low > 64
Synechococcus elongatus PCC 7942 0.19 Synpcc7942_1602 RNA methyltransferase TrmH, group 1 0.55 Synpcc7942_1089 clpB ATPase low > 38

Not shown: 2 genomes with orthologs for CSW01_03875 only; 17 genomes with orthologs for CSW01_03705 only