Conservation of cofitness between CSW01_03090 and CSW01_01520 in Vibrio cholerae E7946 ATCC 55056

104 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_03090 rRNA (cytidine-2'-O-)-methyltransferase 1.0 CSW01_01520 acetyl-coenzyme A synthetase 0.72 4
Pectobacterium carotovorum WPP14 0.65 HER17_RS19860 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.78 HER17_RS17630 acetate--CoA ligase low > 75
Erwinia amylovora T8 0.65 OLJFJH_02280 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.77 OLJFJH_03335 acetate--CoA ligase low > 58
Escherichia coli ECOR38 0.64 HEPCGN_17110 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.77 HEPCGN_11455 acs acetate--CoA ligase low > 88
Escherichia fergusonii Becca 0.64 EFB2_00677 Ribosomal RNA small subunit methyltransferase I 0.77 EFB2_04520 Acetyl-coenzyme A synthetase low > 86
Escherichia coli Nissle 1917 0.64 ECOLIN_RS18085 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.76 ECOLIN_RS23550 acetate--CoA ligase low > 55
Escherichia coli ECRC99 0.64 KEDOAH_09915 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.77 KEDOAH_15320 acs acetate--CoA ligase — —
Escherichia coli BL21 0.64 ECD_03013 16S rRNA C1402 2'-O-ribose methyltransferase, SAM-dependent 0.77 ECD_03941 acetyl-CoA synthetase low > 61
Escherichia coli ECRC98 0.64 JDDGAC_21860 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.77 JDDGAC_16465 acs acetate--CoA ligase low > 87
Escherichia coli ECRC100 0.64 OKFHMN_18235 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.77 OKFHMN_12830 acs acetate--CoA ligase low > 79
Escherichia coli BW25113 0.64 b3146 yraL predicted methyltransferase (NCBI) 0.77 b4069 acs acetyl-coenzyme A synthetase (NCBI) low > 76
Dickeya dadantii 3937 0.64 DDA3937_RS01715 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.77 DDA3937_RS03480 acetate--CoA ligase low > 74
Escherichia coli ECRC102 0.64 NIAGMN_15995 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.77 NIAGMN_10675 acs acetate--CoA ligase low > 80
Escherichia coli ECRC101 0.64 MCAODC_08755 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.77 MCAODC_03340 acs acetate--CoA ligase low > 87
Dickeya dianthicola 67-19 0.64 HGI48_RS01610 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.77 HGI48_RS03580 acetate--CoA ligase low > 71
Escherichia coli HS(pFamp)R (ATCC 700891) 0.64 OHPLBJKB_00555 Ribosomal RNA small subunit methyltransferase I 0.77 OHPLBJKB_03971 Acetyl-coenzyme A synthetase low > 74
Erwinia tracheiphila SCR3 0.64 LU632_RS02230 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.77 LU632_RS23305 acs acetate--CoA ligase low > 73
Shewanella loihica PV-4 0.63 Shew_0228 uroporphyrin-III C/tetrapyrrole methyltransferase (RefSeq) 0.73 Shew_1533 acetyl-CoA synthetase (RefSeq) low > 60
Erwinia tracheiphila HP pepo 2.2 0.63 IJEDHG_06680 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.77 IJEDHG_11295 acs acetate--CoA ligase low > 61
Dickeya dianthicola ME23 0.63 DZA65_RS01685 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.77 DZA65_RS03695 acetate--CoA ligase low > 75
Escherichia coli ECOR27 0.63 NOLOHH_10035 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.77 NOLOHH_05080 acs acetate--CoA ligase low > 76
Escherichia coli ECRC62 0.63 BNILDI_01495 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.77 BNILDI_06445 acs acetate--CoA ligase low > 75
Pantoea agglomerans CFBP13505 P0401 0.63 PagCFBP13505_RS11450 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.77 PagCFBP13505_RS21040 acetate--CoA ligase low > 74
Shewanella oneidensis MR-1 0.63 SO0301 hypothetical methyltransferase (NCBI ptt file) 0.73 SO2743 acs acetyl-coenzyme A synthetase (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.62 Shewana3_3879 hypothetical protein (RefSeq) 0.73 Shewana3_2523 acetyl-CoA synthetase (RefSeq) low > 73
Shewanella amazonensis SB2B 0.62 Sama_3353 hypothetical protein (RefSeq) 0.73 Sama_2079 acetyl-CoA synthetase (RefSeq) low > 62
Enterobacter asburiae PDN3 0.61 EX28DRAFT_3195 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.77 EX28DRAFT_4232 acetate--CoA ligase low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.61 GFF1521 rRNA small subunit methyltransferase I 0.76 GFF1452 Acetyl-coenzyme A synthetase (EC 6.2.1.1) low > 78
Enterobacter sp. TBS_079 0.61 MPMX20_04050 Ribosomal RNA small subunit methyltransferase I 0.77 MPMX20_00291 Acetyl-coenzyme A synthetase low > 85
Rahnella sp. WP5 0.61 EX31_RS12550 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.78 EX31_RS09040 acetate--CoA ligase low > 89
Pantoea sp. MT58 0.61 IAI47_02850 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.77 IAI47_17715 acetate--CoA ligase low > 76
Klebsiella michiganensis M5al 0.60 BWI76_RS24910 rRNA (cytidine-2'-O-)-methyltransferase 0.77 BWI76_RS02095 acetyl-coenzyme A synthetase low > 92
Serratia liquefaciens MT49 0.59 IAI46_22295 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.79 IAI46_01405 acetate--CoA ligase low > 87
Klebsiella pneumoniae MKP103 0.58 KDGMDA_05780 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.77 KDGMDA_10565 acetate--CoA ligase low > 95
Pseudomonas segetis P6 0.55 ACVTMO_RS18925 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.74 ACVTMO_RS09280 acs acetate--CoA ligase low > 75
Pseudomonas sp. SVBP6 0.54 COO64_RS11845 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.75 COO64_RS21645 acs acetate--CoA ligase low > 93
Pseudomonas sp. DMC3 0.54 GFF4428 Ribosomal RNA small subunit methyltransferase I 0.73 GFF4887 Acetyl-coenzyme A synthetase low > 89
Pseudomonas fluorescens FW300-N2E2 0.53 Pf6N2E2_5346 rRNA small subunit methyltransferase I 0.74 Pf6N2E2_5659 Acetyl-coenzyme A synthetase (EC 6.2.1.1) low > 103
Pseudomonas fluorescens FW300-N2C3 0.53 AO356_17110 methyltransferase 0.74 AO356_18695 Acetyl-coenzyme A synthetase (EC 6.2.1.1) (from data) low > 104
Pseudomonas lactucae CFBP13502 0.53 GEMAOFIL_01121 Ribosomal RNA small subunit methyltransferase I 0.73 GEMAOFIL_04492 Acetyl-coenzyme A synthetase low > 96
Pseudomonas syringae pv. syringae B728a 0.53 Psyr_4112 Protein of unknown function UPF0011 0.73 Psyr_3572 acetyl-coenzyme A synthetase low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.53 Psyr_4112 Protein of unknown function UPF0011 0.73 Psyr_3572 acetyl-coenzyme A synthetase low > 86
Pseudomonas fluorescens FW300-N2E3 0.53 AO353_15290 methyltransferase 0.73 AO353_03060 Acetyl-coenzyme A synthetase (EC 6.2.1.1) (from data) low > 101
Pseudomonas simiae WCS417 0.53 PS417_04590 methyltransferase 0.73 PS417_21750 acetyl-CoA synthetase low > 88
Pseudomonas sp. RS175 0.53 PFR28_03597 Ribosomal RNA small subunit methyltransferase I 0.74 PFR28_03289 Acetyl-coenzyme A synthetase low > 88
Pseudomonas orientalis W4I3 0.53 QF045_RS07580 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.73 QF045_RS23855 acetate--CoA ligase low > 93
Pseudomonas fluorescens SBW25-INTG 0.53 PFLU_RS04655 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.73 PFLU_RS23355 acetate--CoA ligase low > 109
Pseudomonas fluorescens SBW25 0.53 PFLU_RS04655 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.73 PFLU_RS23355 acetate--CoA ligase low > 109
Pseudomonas stutzeri RCH2 0.52 Psest_3270 probable S-adenosylmethionine-dependent methyltransferase, YraL family 0.69 Psest_2657 acetate--CoA ligase low > 67
Pseudomonas putida KT2440 0.52 PP_1326 16S rRNA 2'-O-ribose C1402 methyltransferase 0.75 PP_4487 acetyl-CoA synthetase low > 96
Pseudomonas sp. BP01 0.52 JOY50_RS15165 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.75 JOY50_RS01010 acs acetate--CoA ligase low > 84
Pseudomonas fluorescens FW300-N1B4 0.52 Pf1N1B4_953 rRNA small subunit methyltransferase I 0.73 Pf1N1B4_3430 Acetyl-coenzyme A synthetase (EC 6.2.1.1) — —
Pseudomonas sp. S08-1 0.51 OH686_08340 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.75 OH686_21250 acetate--CoA ligase low > 80
Pseudomonas fluorescens GW456-L13 0.51 PfGW456L13_1643 rRNA small subunit methyltransferase I 0.73 PfGW456L13_1963 Acetyl-coenzyme A synthetase (EC 6.2.1.1) low > 87
Pseudomonas aeruginosa PUPa3 0.50 DQ20_RS56825 rsmI;go_function=rRNA 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.73 DQ20_RS44765 acs;go_function=acetate-CoA acetate--CoA ligase low > 101
Pseudomonas aeruginosa PA14 0.50 IKLFDK_01980 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.73 IKLFDK_03940 acetate--CoA ligase — —
Pseudomonas aeruginosa MRSN321 0.50 DY961_RS24365 rsmI;go_function=rRNA 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.73 DY961_RS08035 acs;go_function=acetate-CoA acetate--CoA ligase low > 100
Methylophilus sp. DMC18 0.49 GFF2450 Ribosomal RNA small subunit methyltransferase I 0.47 GFF994 Acetyl-coenzyme A synthetase low > 43
Alteromonas macleodii MIT1002 0.49 MIT1002_03113 Ribosomal RNA small subunit methyltransferase I 0.67 MIT1002_03516 Acetyl-coenzyme A synthetase low > 70
Dyella japonica UNC79MFTsu3.2 0.49 ABZR86_RS11380 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.67 ABZR86_RS15200 acetate--CoA ligase low > 74
Xanthomonas campestris pv. campestris strain 8004 0.47 Xcc-8004.4371.1 rRNA small subunit methyltransferase I 0.64 Xcc-8004.5157.1 Acetyl-coenzyme A synthetase (EC 6.2.1.1) low > 74
Marinobacter adhaerens HP15 0.46 HP15_554 tetrapyrrole methylase family protein 0.71 HP15_811 acetyl-CoA synthetase low > 73
Rhodanobacter denitrificans MT42 0.45 LRK55_RS11925 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.66 LRK55_RS08185 acetate--CoA ligase low > 63
Dechlorosoma suillum PS 0.45 Dsui_0251 putative S-adenosylmethionine-dependent methyltransferase, YraL family 0.48 Dsui_2003 acetate--CoA ligase low > 51
Kangiella aquimarina DSM 16071 0.45 B158DRAFT_2109 probable S-adenosylmethionine-dependent methyltransferase, YraL family 0.65 B158DRAFT_0063 acetate--CoA ligase low > 40
Rhodanobacter sp000427505 FW510-R12 0.45 LRK53_RS16300 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.66 LRK53_RS00080 acetate--CoA ligase low > 59
Rhodanobacter denitrificans FW104-10B01 0.45 LRK54_RS12190 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.66 LRK54_RS08420 acetate--CoA ligase low > 59
Herbaspirillum seropedicae SmR1 0.45 HSERO_RS23345 16S rRNA methyltransferase 0.47 HSERO_RS07770 acetyl-CoA synthetase low > 78
Lysobacter sp. OAE881 0.44 ABIE51_RS04695 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.64 ABIE51_RS01660 acetate--CoA ligase low > 62
Rhodanobacter sp. FW510-T8 0.44 OKGIIK_11735 rsmI 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.64 OKGIIK_15190 acs acetate--CoA ligase low > 53
Acinetobacter radioresistens SK82 0.44 MPMX26_02282 Ribosomal RNA small subunit methyltransferase I 0.66 MPMX26_02906 Acetyl-coenzyme A synthetase low > 36
Acinetobacter baumannii LAC-4 0.44 RR41_RS09275 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.67 RR41_RS00965 acetate--CoA ligase low > 55
Paraburkholderia sabiae LMG 24235 0.42 QEN71_RS00655 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.49 QEN71_RS23765 acetate--CoA ligase low > 153
Burkholderia phytofirmans PsJN 0.40 BPHYT_RS01940 16S rRNA methyltransferase 0.49 BPHYT_RS07000 acetyl-CoA synthetase low > 109
Synechocystis sp000284455 PCC 6803 0.40 SGL_RS09835 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.51 SGL_RS15030 acetate--CoA ligase low > 52
Sinorhizobium meliloti 1021 0.39 SMc00416 hypothetical protein 0.68 SMc04093 acetyl-CoA synthetase low > 103
Paraburkholderia bryophila 376MFSha3.1 0.39 H281DRAFT_02152 16S rRNA (cytidine1402-2'-O)-methyltransferase 0.49 H281DRAFT_04953 acetyl-coenzyme A synthetase low > 103
Rhizobium sp. OAE497 0.38 ABIE40_RS01370 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.66 ABIE40_RS19160 acetate--CoA ligase low > 107
Paraburkholderia graminis OAS925 0.38 ABIE53_000470 16S rRNA (cytidine1402-2'-O)-methyltransferase 0.49 ABIE53_001664 acetyl-CoA synthetase low > 113
Synechococcus elongatus PCC 7942 0.38 Synpcc7942_0174 hypothetical protein 0.52 Synpcc7942_1352 acsA acetyl-CoA synthetase low > 38
Castellaniella sp019104865 MT123 0.38 ABCV34_RS14320 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.49 ABCV34_RS00680 acetate--CoA ligase low > 48
Cupriavidus basilensis FW507-4G11 0.37 RR42_RS19740 16S rRNA methyltransferase 0.49 RR42_RS13880 AMP-dependent synthetase low > 128
Agrobacterium fabrum C58 0.37 Atu0302 tetrapyrrole methylase family protein 0.68 Atu2745 acetyl-coenzyme A synthetase low > 89
Sphingobium sp. HT1-2 0.36 GFF309 '16S rRNA (cytidine(1402)-2'-O)-methyltransferase (EC 2.1.1.198)' transl_table=11 0.65 GFF4891 Acetyl-CoA synthetase (EC 6.2.1.1) low > 95
Rhodopseudomonas palustris CGA009 0.36 TX73_001680 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.68 TX73_001095 acetate--CoA ligase low > 86
Bosea sp. OAE506 0.35 ABIE41_RS03315 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.68 ABIE41_RS05675 acetate--CoA ligase low > 77
Azospirillum sp. SherDot2 0.35 MPMX19_02471 Ribosomal RNA small subunit methyltransferase I 0.69 MPMX19_02038 Acetyl-coenzyme A synthetase low > 112
Sphingomonas koreensis DSMZ 15582 0.34 Ga0059261_2755 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.64 Ga0059261_1313 acetyl-coenzyme A synthetase (EC 6.2.1.1) low > 68
Azospirillum brasilense Sp245 0.34 AZOBR_RS02155 16S rRNA methyltransferase 0.70 AZOBR_RS00270 acetyl-CoA synthetase low > 97
Acidovorax sp. GW101-3H11 0.34 Ac3H11_4466 rRNA small subunit methyltransferase I 0.47 Ac3H11_951 Acetyl-coenzyme A synthetase (EC 6.2.1.1) — —
Ralstonia solanacearum UW163 0.34 UW163_RS05115 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.47 UW163_RS11280 acetate--CoA ligase — —
Ralstonia solanacearum IBSBF1503 0.34 RALBFv3_RS08495 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.47 RALBFv3_RS02445 acetate--CoA ligase low > 76
Ralstonia solanacearum PSI07 0.33 RPSI07_RS08730 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.47 RPSI07_RS14880 acetate--CoA ligase low > 81
Parabacteroides merdae CL09T00C40 0.33 HMPREF1078_RS04125 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.13 HMPREF1078_RS10645 AMP-binding protein low > 61
Variovorax sp. OAS795 0.33 ABID97_RS00285 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.47 ABID97_RS27430 acetate--CoA ligase low > 91
Ralstonia solanacearum GMI1000 0.33 RS_RS16360 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.47 RS_RS09815 acetyl-coenzyme A synthetase low > 80
Variovorax sp. SCN45 0.33 GFF3735 16S rRNA (cytidine(1402)-2'-O)-methyltransferase (EC 2.1.1.198) 0.46 GFF475 Acetyl-CoA synthetase (EC 6.2.1.1) low > 127
Ralstonia sp. UNC404CL21Col 0.33 ABZR87_RS03815 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.48 ABZR87_RS14360 acetate--CoA ligase low > 80
Hydrogenophaga sp. GW460-11-11-14-LB1 0.32 GFF2715 rRNA small subunit methyltransferase I 0.48 GFF4107 Acetyl-coenzyme A synthetase (EC 6.2.1.1) low > 90
Caulobacter crescentus NA1000 0.32 CCNA_00143 ribosomal RNA small subunit methyltransferase I 0.64 CCNA_03696 acetyl-coenzyme A synthetase low > 66
Caulobacter crescentus NA1000 Δfur 0.32 CCNA_00143 ribosomal RNA small subunit methyltransferase I 0.64 CCNA_03696 acetyl-coenzyme A synthetase low > 67
Rhodospirillum rubrum S1H 0.32 Rru_A3693 Protein of unknown function UPF0011 (NCBI) 0.69 Rru_A3575 Acetate--CoA ligase (NCBI) low > 58
Xanthobacter sp. DMC5 0.31 GFF2243 Ribosomal RNA small subunit methyltransferase I 0.69 GFF160 Acetyl-coenzyme A synthetase — —
Phaeobacter inhibens DSM 17395 0.28 PGA1_c26730 probable S-adenosylmethionine-dependent methyltransferase, YraL family 0.61 PGA1_c12950 acetyl-coenzyme A synthetase Acs low > 62
Brevundimonas sp. GW460-12-10-14-LB2 0.28 A4249_RS13300 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.64 A4249_RS15190 acetate--CoA ligase — —

Not shown: 1 genomes with orthologs for CSW01_03090 only; 14 genomes with orthologs for CSW01_01520 only