Conservation of cofitness between CSW01_09245 and CSW01_01015 in Vibrio cholerae E7946 ATCC 55056

93 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_09245 Holliday junction branch migration protein RuvA 1.0 CSW01_01015 DNA helicase II 0.88 1
Escherichia fergusonii Becca 0.67 EFB2_02081 Holliday junction ATP-dependent DNA helicase RuvA 0.71 EFB2_04824 DNA helicase II — —
Escherichia coli BW25113 0.67 b1861 ruvA Holliday junction DNA helicase motor protein (NCBI) 0.71 b3813 uvrD DNA-dependent ATPase I and helicase II (NCBI) low > 76
Escherichia coli Nissle 1917 0.67 ECOLIN_RS10365 Holliday junction branch migration protein RuvA 0.71 ECOLIN_RS21885 DNA helicase II — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.67 OHPLBJKB_01867 Holliday junction ATP-dependent DNA helicase RuvA 0.71 OHPLBJKB_04237 DNA helicase II — —
Escherichia coli ECRC62 0.67 BNILDI_15515 ruvA Holliday junction branch migration protein RuvA 0.71 BNILDI_04995 uvrD DNA helicase II — —
Escherichia coli BL21 0.67 ECD_01832 component of RuvABC resolvasome, regulatory subunit 0.71 ECD_03689 DNA-dependent ATPase I and helicase II — —
Escherichia coli ECOR27 0.66 NOLOHH_16725 ruvA Holliday junction branch migration protein RuvA 0.71 NOLOHH_06540 uvrD DNA helicase II — —
Escherichia coli ECRC101 0.66 MCAODC_19125 ruvA Holliday junction branch migration protein RuvA 0.71 MCAODC_04915 uvrD DNA helicase II — —
Escherichia coli ECRC101 0.66 OKFHMN_26280 ruvA Holliday junction branch migration protein RuvA 0.71 OKFHMN_14410 uvrD DNA helicase II — —
Escherichia coli ECRC99 0.66 KEDOAH_01825 ruvA Holliday junction branch migration protein RuvA 0.71 KEDOAH_13740 uvrD DNA helicase II — —
Escherichia coli ECRC102 0.66 NIAGMN_01780 ruvA Holliday junction branch migration protein RuvA 0.71 NIAGMN_12165 uvrD DNA helicase II — —
Enterobacter sp. TBS_079 0.66 MPMX20_02767 Holliday junction ATP-dependent DNA helicase RuvA 0.70 MPMX20_04463 DNA helicase II 0.40 4
Escherichia coli ECRC98 0.66 JDDGAC_00855 ruvA Holliday junction branch migration protein RuvA 0.71 JDDGAC_18035 uvrD DNA helicase II — —
Rahnella sp. WP5 0.66 EX31_RS11675 Holliday junction branch migration protein RuvA 0.68 EX31_RS15175 DNA helicase II 0.45 46
Escherichia coli ECOR38 0.66 HEPCGN_04690 ruvA Holliday junction branch migration protein RuvA 0.71 HEPCGN_13115 uvrD DNA helicase II — —
Enterobacter asburiae PDN3 0.66 EX28DRAFT_0695 Holliday junction DNA helicase subunit RuvA 0.70 EX28DRAFT_4482 ATP-dependent DNA helicase UvrD (EC 3.6.1.-) — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.65 GFF1640 Holliday junction DNA helicase RuvA 0.71 GFF241 ATP-dependent DNA helicase UvrD/PcrA — —
Klebsiella michiganensis M5al 0.65 BWI76_RS18150 Holliday junction branch migration protein RuvA 0.71 BWI76_RS01220 DNA-dependent helicase II — —
Shewanella loihica PV-4 0.64 Shew_2076 Holliday junction DNA helicase RuvA (RefSeq) 0.66 Shew_3385 uvrD DNA-dependent helicase II (RefSeq) — —
Alteromonas macleodii MIT1002 0.63 MIT1002_01332 Holliday junction ATP-dependent DNA helicase RuvA 0.65 MIT1002_00153 DNA helicase II — —
Pantoea sp. MT58 0.63 IAI47_08445 Holliday junction branch migration protein RuvA 0.69 IAI47_18390 DNA helicase II 0.26 14
Shewanella oneidensis MR-1 0.63 SO2430 ruvA Holliday junction DNA helicase RuvA (NCBI ptt file) 0.67 SO0467 uvrD DNA helicase II (NCBI ptt file) 0.42 9
Shewanella sp. ANA-3 0.62 Shewana3_1956 ruvA Holliday junction DNA helicase RuvA (RefSeq) 0.67 Shewana3_0469 uvrD DNA-dependent helicase II (RefSeq) low > 73
Dickeya dadantii 3937 0.61 DDA3937_RS10080 Holliday junction branch migration protein RuvA 0.70 DDA3937_RS19880 DNA helicase II — —
Dickeya dianthicola 67-19 0.61 HGI48_RS10110 Holliday junction branch migration protein RuvA 0.70 HGI48_RS20035 DNA helicase II — —
Pectobacterium carotovorum WPP14 0.61 HER17_RS11845 Holliday junction branch migration protein RuvA 0.70 HER17_RS01360 DNA helicase II — —
Dickeya dianthicola ME23 0.61 DZA65_RS10525 Holliday junction branch migration protein RuvA 0.70 DZA65_RS21080 DNA helicase II — —
Shewanella amazonensis SB2B 0.60 Sama_1840 ruvA Holliday junction DNA helicase RuvA (RefSeq) 0.66 Sama_0419 uvrD DNA-dependent helicase II (RefSeq) — —
Erwinia tracheiphila SCR3 0.60 LU632_RS13415 ruvA Holliday junction branch migration protein RuvA 0.68 LU632_RS24125 uvrD DNA helicase II — —
Serratia liquefaciens MT49 0.60 IAI46_14625 Holliday junction branch migration protein RuvA 0.71 IAI46_00735 DNA helicase II — —
Pseudomonas putida KT2440 0.57 PP_1216 Holliday junction ATP-dependent DNA helicase RuvA 0.60 PP_5352 DNA-dependent ATPase I and helicase II, nucleotide Excision Repair Complex 0.49 3
Pseudomonas stutzeri RCH2 0.56 Psest_1496 Holliday junction DNA helicase, RuvA subunit 0.59 Psest_4098 Superfamily I DNA and RNA helicases low > 67
Pseudomonas syringae pv. syringae B728a ΔmexB 0.55 Psyr_1409 Holliday junction DNA helicase subunit RuvA 0.58 Psyr_5065 ATP-dependent DNA helicase UvrD 0.61 1
Pseudomonas syringae pv. syringae B728a 0.55 Psyr_1409 Holliday junction DNA helicase subunit RuvA 0.58 Psyr_5065 ATP-dependent DNA helicase UvrD — —
Pseudomonas sp. S08-1 0.55 OH686_19130 Holliday junction DNA helicase RuvA 0.59 OH686_13045 ATP-dependent DNA helicase UvrD/PcrA — —
Pseudomonas fluorescens FW300-N2C3 0.55 AO356_18020 ATP-dependent DNA helicase RuvA 0.59 AO356_11990 DNA helicase II 0.34 18
Pseudomonas sp. RS175 0.55 PFR28_03413 Holliday junction ATP-dependent DNA helicase RuvA 0.59 PFR28_04523 DNA helicase II 0.27 41
Pseudomonas fluorescens FW300-N1B4 0.55 Pf1N1B4_638 Holliday junction DNA helicase RuvA 0.59 Pf1N1B4_2005 ATP-dependent DNA helicase UvrD/PcrA — —
Pseudomonas fluorescens FW300-N2E2 0.55 Pf6N2E2_5536 Holliday junction DNA helicase RuvA 0.59 Pf6N2E2_4273 ATP-dependent DNA helicase UvrD/PcrA low > 103
Pseudomonas fluorescens FW300-N2E3 0.55 AO353_03585 ATP-dependent DNA helicase RuvA 0.59 AO353_10055 DNA helicase II 0.31 5
Pseudomonas fluorescens GW456-L13 0.54 PfGW456L13_1852 Holliday junction DNA helicase RuvA 0.59 PfGW456L13_724 ATP-dependent DNA helicase UvrD/PcrA 0.47 12
Kangiella aquimarina DSM 16071 0.53 B158DRAFT_1125 Holliday junction DNA helicase subunit RuvA 0.58 B158DRAFT_0238 Superfamily I DNA and RNA helicases 0.79 8
Marinobacter adhaerens HP15 0.52 HP15_2041 Holliday junction ATP-dependent DNA helicase RuvA 0.56 HP15_3403 UvrD/REP helicase — —
Pseudomonas fluorescens SBW25-INTG 0.52 PFLU_RS24090 Holliday junction branch migration protein RuvA 0.59 PFLU_RS29900 DNA helicase II 0.29 43
Pseudomonas fluorescens SBW25 0.52 PFLU_RS24090 Holliday junction branch migration protein RuvA 0.59 PFLU_RS29900 DNA helicase II 0.59 75
Rhodanobacter denitrificans MT42 0.48 LRK55_RS04690 Holliday junction branch migration protein RuvA 0.54 LRK55_RS06595 DNA helicase II — —
Rhodanobacter denitrificans FW104-10B01 0.48 LRK54_RS04910 Holliday junction branch migration protein RuvA 0.54 LRK54_RS06850 DNA helicase II — —
Dyella japonica UNC79MFTsu3.2 0.46 ABZR86_RS10840 Holliday junction branch migration protein RuvA 0.55 ABZR86_RS16965 DNA helicase II 0.67 3
Rhodanobacter sp. FW510-T8 0.45 OKGIIK_01840 ruvA Holliday junction branch migration protein RuvA 0.55 OKGIIK_16775 DNA helicase — —
Lysobacter sp. OAE881 0.44 ABIE51_RS05045 Holliday junction branch migration protein RuvA 0.55 ABIE51_RS01985 DNA helicase II 0.56 62
Dechlorosoma suillum PS 0.43 Dsui_0485 Holliday junction DNA helicase, RuvA subunit 0.45 Dsui_1227 DNA/RNA helicase, superfamily I — —
Xanthomonas campestris pv. campestris strain 8004 0.42 Xcc-8004.1436.1 Holliday junction DNA helicase RuvA 0.54 Xcc-8004.5114.1 ATP-dependent DNA helicase UvrD/PcrA low > 74
Burkholderia phytofirmans PsJN 0.41 BPHYT_RS16615 holliday junction ATP-dependent DNA helicase RuvA 0.45 BPHYT_RS13840 DNA-dependent helicase — —
Variovorax sp. SCN45 0.41 GFF2073 Holliday junction ATP-dependent DNA helicase RuvA (EC 3.6.4.12) 0.43 GFF4000 ATP-dependent DNA helicase UvrD/PcrA (EC 3.6.4.12) low > 127
Castellaniella sp019104865 MT123 0.41 ABCV34_RS07980 Holliday junction branch migration protein RuvA 0.42 ABCV34_RS05210 UvrD-helicase domain-containing protein low > 48
Variovorax sp. OAS795 0.39 ABID97_RS24920 Holliday junction branch migration protein RuvA 0.44 ABID97_RS09150 UvrD-helicase domain-containing protein low > 91
Hydrogenophaga sp. GW460-11-11-14-LB1 0.39 GFF1666 Holliday junction DNA helicase RuvA 0.42 GFF5598 ATP-dependent DNA helicase UvrD/PcrA — —
Ralstonia solanacearum GMI1000 0.38 RS_RS02490 Holliday junction branch migration protein RuvA 0.42 RS_RS11220 DNA-dependent helicase — —
Paraburkholderia graminis OAS925 0.38 ABIE53_003494 Holliday junction DNA helicase RuvA 0.45 ABIE53_002936 DNA helicase-2/ATP-dependent DNA helicase PcrA — —
Ralstonia solanacearum UW163 0.38 UW163_RS01915 Holliday junction branch migration protein RuvA 0.42 UW163_RS09895 DNA-dependent helicase — —
Ralstonia sp. UNC404CL21Col 0.38 ABZR87_RS07625 Holliday junction branch migration protein RuvA 0.43 ABZR87_RS15705 UvrD-helicase domain-containing protein low > 80
Ralstonia solanacearum IBSBF1503 0.38 RALBFv3_RS11670 Holliday junction branch migration protein RuvA 0.42 RALBFv3_RS03775 DNA-dependent helicase — —
Paraburkholderia bryophila 376MFSha3.1 0.38 H281DRAFT_04254 Holliday junction DNA helicase subunit RuvA 0.44 H281DRAFT_04469 ATP-dependent DNA helicase UvrD — —
Paraburkholderia sabiae LMG 24235 0.37 QEN71_RS26795 Holliday junction branch migration protein RuvA 0.44 QEN71_RS05110 3'-5' exonuclease — —
Ralstonia solanacearum PSI07 0.37 RPSI07_RS21550 Holliday junction branch migration protein RuvA 0.42 RPSI07_RS13455 DNA-dependent helicase — —
Cupriavidus basilensis FW507-4G11 0.37 RR42_RS02705 Holliday junction DNA helicase RuvA 0.44 RR42_RS15090 DNA helicase low > 128
Herbaspirillum seropedicae SmR1 0.37 HSERO_RS02090 Holliday junction DNA helicase RuvA 0.43 HSERO_RS02160 DNA-dependent helicase 0.40 25
Acidovorax sp. GW101-3H11 0.37 Ac3H11_4683 Holliday junction DNA helicase RuvA 0.44 Ac3H11_1660 ATP-dependent DNA helicase UvrD/PcrA — —
Pontibacter actiniarum KMM 6156, DSM 19842 0.31 CA264_14545 Holliday junction branch migration protein RuvA 0.31 CA264_07795 ATP-dependent DNA helicase — —
Synechococcus elongatus PCC 7942 0.30 Synpcc7942_2298 ruvA Holliday junction DNA helicase motor protein 0.29 Synpcc7942_2168 pcrA ATP-dependent DNA helicase, Rep family — —
Pedobacter sp. GW460-11-11-14-LB5 0.30 CA265_RS18995 Holliday junction branch migration protein RuvA 0.31 CA265_RS12980 ATP-dependent DNA helicase — —
Echinicola vietnamensis KMM 6221, DSM 17526 0.30 Echvi_4082 Holliday junction DNA helicase, RuvA subunit 0.33 Echvi_0292 Superfamily I DNA and RNA helicases — —
Mucilaginibacter yixingensis YX-36 DSM 26809 0.27 ABZR88_RS18310 Holliday junction branch migration protein RuvA 0.31 ABZR88_RS07840 ATP-dependent helicase — —
Parabacteroides merdae CL09T00C40 0.25 HMPREF1078_RS13015 Holliday junction branch migration protein RuvA 0.31 HMPREF1078_RS03560 3'-5' exonuclease low > 61
Brevundimonas sp. GW460-12-10-14-LB2 0.25 A4249_RS15860 Holliday junction branch migration protein RuvA 0.32 A4249_RS04960 UvrD-helicase domain-containing protein — —
Rhodospirillum rubrum S1H 0.24 Rru_A1088 DNA recombination protein RuvA (NCBI) 0.32 Rru_A1536 UvrD/REP helicase (NCBI) — —
Sphingomonas koreensis DSMZ 15582 0.24 Ga0059261_0820 Holliday junction DNA helicase subunit RuvA 0.35 Ga0059261_0249 Superfamily I DNA and RNA helicases — —
Magnetospirillum magneticum AMB-1 0.23 AMB_RS16255 Holliday junction branch migration protein RuvA 0.34 AMB_RS03725 DNA helicase II — —
Bacteroides stercoris CC31F 0.23 HMPREF1181_RS07915 Holliday junction branch migration protein RuvA 0.29 HMPREF1181_RS16505 UvrD-helicase domain-containing protein low > 56
Bacteroides thetaiotaomicron VPI-5482 0.23 BT1978 Holliday junction DNA helicase ruvA (NCBI ptt file) 0.31 BT0657 ATP-dependent DNA helicase (NCBI ptt file) — —
Bosea sp. OAE506 0.23 ABIE41_RS09475 Holliday junction branch migration protein RuvA 0.35 ABIE41_RS12730 UvrD-helicase domain-containing protein — —
Bacteroides ovatus ATCC 8483 0.23 BACOVA_00691 Holliday junction DNA helicase RuvA 0.31 BACOVA_02365 UvrD/REP helicase — —
Mycobacterium tuberculosis H37Rv 0.23 Rv2593c Probable holliday junction DNA helicase RuvA 0.33 Rv0949 Probable ATP-dependent DNA helicase II UvrD1 — —
Fusobacterium nucleatum SB010 0.23 HUW76_06655 Holliday junction branch migration protein RuvA 0.29 HUW76_07175 UvrD-helicase domain-containing protein low > 35
Rhizobium sp. OAE497 0.22 ABIE40_RS15745 Holliday junction branch migration protein RuvA 0.33 ABIE40_RS11670 UvrD-helicase domain-containing protein low > 107
Sinorhizobium meliloti 1021 0.22 SMc03966 Holliday junction DNA helicase RuvA 0.31 SMc01461 DNA helicase II protein — —
Phaeobacter inhibens DSM 17395 0.22 PGA1_c05860 holliday junction ATP-dependent DNA helicase RuvA 0.34 PGA1_c09450 DNA helicase II UvrD low > 62
Phocaeicola dorei CL03T12C01 0.22 ABI39_RS08200 Holliday junction branch migration protein RuvA 0.30 ABI39_RS17735 UvrD-helicase domain-containing protein — —
Dinoroseobacter shibae DFL-12 0.21 Dshi_1104 Holliday junction DNA helicase RuvA (RefSeq) 0.33 Dshi_2483 UvrD/REP helicase (RefSeq) — —
Phocaeicola vulgatus CL09T03C04 0.21 HMPREF1058_RS00595 Holliday junction branch migration protein RuvA 0.30 HMPREF1058_RS03305 UvrD-helicase domain-containing protein 0.61 30
Desulfovibrio vulgaris Miyazaki F 0.21 DvMF_3204 Holliday junction DNA helicase RuvA (RefSeq) 0.17 DvMF_1967 UvrD/REP helicase (RefSeq) 0.59 3
Azospirillum brasilense Sp245 0.20 AZOBR_RS09045 Holliday junction DNA helicase RuvA 0.35 AZOBR_RS12445 DNA helicase II — —
Azospirillum sp. SherDot2 0.19 MPMX19_00697 Holliday junction ATP-dependent DNA helicase RuvA 0.34 MPMX19_01610 ATP-dependent DNA helicase PcrA — —

Not shown: 7 genomes with orthologs for CSW01_09245 only; 1 genomes with orthologs for CSW01_01015 only