Conservation of cofitness between CSW01_05630 and CSW01_01015 in Vibrio cholerae E7946 ATCC 55056

109 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_05630 replication-associated recombination protein A 1.0 CSW01_01015 DNA helicase II 0.94 1
Dickeya dianthicola 67-19 0.73 HGI48_RS09620 replication-associated recombination protein A 0.70 HGI48_RS20035 DNA helicase II low > 71
Dickeya dianthicola ME23 0.73 DZA65_RS09930 replication-associated recombination protein A 0.70 DZA65_RS21080 DNA helicase II low > 75
Klebsiella pneumoniae MRSN742743 0.73 GJGHJB_03321 rarA replication-associated recombination protein RarA 0.71 GJGHJB_04824 uvrD DNA helicase II low > 83
Pantoea sp. MT58 0.73 IAI47_12900 replication-associated recombination protein A 0.69 IAI47_18390 DNA helicase II low > 76
Escherichia coli BW25113 0.73 b0892 ycaJ recombination protein (NCBI) 0.71 b3813 uvrD DNA-dependent ATPase I and helicase II (NCBI) 0.14 30
Escherichia fergusonii Becca 0.73 EFB2_03169 Replication-associated recombination protein A 0.71 EFB2_04824 DNA helicase II low > 86
Escherichia coli Nissle 1917 0.73 ECOLIN_RS04745 replication-associated recombination protein RarA 0.71 ECOLIN_RS21885 DNA helicase II low > 55
Klebsiella michiganensis M5al 0.73 BWI76_RS09670 recombination factor protein RarA 0.71 BWI76_RS01220 DNA-dependent helicase II 0.37 15
Escherichia coli HS(pFamp)R (ATCC 700891) 0.73 OHPLBJKB_02776 Replication-associated recombination protein A 0.71 OHPLBJKB_04237 DNA helicase II 0.48 1
Escherichia coli BL21 0.73 ECD_00896 recombination intermediate processing DNA-dependent ATPase 0.71 ECD_03689 DNA-dependent ATPase I and helicase II — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.73 GFF4896 FIG065221: Holliday junction DNA helicase 0.71 GFF241 ATP-dependent DNA helicase UvrD/PcrA low > 78
Klebsiella pneumoniae MKP103 0.73 KDGMDA_17905 replication-associated recombination protein RarA 0.71 KDGMDA_09710 DNA helicase II low > 94
Escherichia coli ECRC98 0.73 JDDGAC_09370 rarA replication-associated recombination protein RarA 0.71 JDDGAC_18035 uvrD DNA helicase II low > 87
Escherichia coli ECRC100 0.73 OKFHMN_05560 rarA replication-associated recombination protein RarA 0.71 OKFHMN_14410 uvrD DNA helicase II low > 79
Dickeya dadantii 3937 0.73 DDA3937_RS09605 replication-associated recombination protein A 0.70 DDA3937_RS19880 DNA helicase II low > 74
Escherichia coli ECRC101 0.73 MCAODC_24950 rarA replication-associated recombination protein RarA 0.71 MCAODC_04915 uvrD DNA helicase II 0.39 3
Escherichia coli ECOR38 0.73 HEPCGN_22950 rarA replication-associated recombination protein RarA 0.71 HEPCGN_13115 uvrD DNA helicase II low > 88
Escherichia coli ECRC99 0.73 KEDOAH_22175 rarA replication-associated recombination protein RarA 0.71 KEDOAH_13740 uvrD DNA helicase II — —
Pantoea agglomerans CFBP13505 P0401 0.73 PagCFBP13516_RS12985 replication-associated recombination protein A 0.68 PagCFBP13516_RS18650 uvrD DNA helicase II low > 80
Escherichia coli ECRC102 0.73 NIAGMN_03280 rarA replication-associated recombination protein RarA 0.71 NIAGMN_12165 uvrD DNA helicase II low > 80
Escherichia coli ECRC62 0.72 BNILDI_20385 rarA replication-associated recombination protein RarA 0.71 BNILDI_04995 uvrD DNA helicase II low > 75
Escherichia coli ECOR27 0.72 NOLOHH_22130 rarA replication-associated recombination protein RarA 0.71 NOLOHH_06540 uvrD DNA helicase II low > 75
Enterobacter asburiae PDN3 0.72 EX28DRAFT_2040 ATPase related to the helicase subunit of the Holliday junction resolvase 0.70 EX28DRAFT_4482 ATP-dependent DNA helicase UvrD (EC 3.6.1.-) low > 76
Enterobacter sp. TBS_079 0.72 MPMX20_01554 Replication-associated recombination protein A 0.70 MPMX20_04463 DNA helicase II low > 85
Pectobacterium carotovorum WPP14 0.72 HER17_RS12345 replication-associated recombination protein A 0.70 HER17_RS01360 DNA helicase II low > 75
Rahnella sp. WP5 0.71 EX31_RS18515 replication-associated recombination protein A 0.68 EX31_RS15175 DNA helicase II low > 89
Erwinia amylovora T8 0.71 OLJFJH_16170 recombination factor protein RarA 0.68 OLJFJH_06425 DNA helicase II low > 58
Erwinia tracheiphila HP pepo 2.2 0.71 IJEDHG_20230 Replication-associated recombination protein A 0.68 IJEDHG_08770 uvrD DNA helicase II — —
Serratia liquefaciens MT49 0.70 IAI46_08570 replication-associated recombination protein A 0.71 IAI46_00735 DNA helicase II low > 87
Erwinia tracheiphila SCR3 0.69 LU632_RS09755 replication-associated recombination protein A 0.68 LU632_RS24125 uvrD DNA helicase II — —
Shewanella loihica PV-4 0.64 Shew_2022 recombination factor protein RarA (RefSeq) 0.66 Shew_3385 uvrD DNA-dependent helicase II (RefSeq) low > 60
Shewanella sp. ANA-3 0.63 Shewana3_2052 recombination factor protein RarA (RefSeq) 0.67 Shewana3_0469 uvrD DNA-dependent helicase II (RefSeq) low > 73
Shewanella oneidensis MR-1 0.63 SO2308 ATPase, AAA family (NCBI ptt file) 0.67 SO0467 uvrD DNA helicase II (NCBI ptt file) 0.20 20
Shewanella amazonensis SB2B 0.61 Sama_1774 recombination factor protein RarA (RefSeq) 0.66 Sama_0419 uvrD DNA-dependent helicase II (RefSeq) low > 62
Alteromonas macleodii MIT1002 0.59 MIT1002_02178 Replication-associated recombination protein A 0.65 MIT1002_00153 DNA helicase II low > 70
Marinobacter adhaerens HP15 0.57 HP15_1817 recombination factor protein RarA 0.56 HP15_3403 UvrD/REP helicase low > 73
Pseudomonas putida KT2440 0.57 PP_4002 DNA-dependent ATPase required for recombination 0.60 PP_5352 DNA-dependent ATPase I and helicase II, nucleotide Excision Repair Complex 0.25 10
Pseudomonas sp. BP01 0.57 JOY50_RS06525 replication-associated recombination protein A 0.60 JOY50_RS08735 uvrD DNA helicase II low > 84
Pseudomonas fluorescens FW300-N2C3 0.57 AO356_22185 recombination factor protein RarA 0.59 AO356_11990 DNA helicase II 0.45 11
Pseudomonas sp. SVBP6 0.57 COO64_RS24170 replication-associated recombination protein A 0.60 COO64_RS01845 uvrD DNA helicase II 0.57 5
Pseudomonas syringae pv. syringae B728a ΔmexB 0.57 Psyr_3177 Recombination protein MgsA 0.58 Psyr_5065 ATP-dependent DNA helicase UvrD low > 86
Pseudomonas syringae pv. syringae B728a 0.57 Psyr_3177 Recombination protein MgsA 0.58 Psyr_5065 ATP-dependent DNA helicase UvrD low > 86
Pseudomonas sp. RS175 0.56 PFR28_02606 Replication-associated recombination protein A 0.59 PFR28_04523 DNA helicase II 0.28 3
Pseudomonas fluorescens FW300-N2E2 0.56 Pf6N2E2_299 FIG065221: Holliday junction DNA helicase 0.59 Pf6N2E2_4273 ATP-dependent DNA helicase UvrD/PcrA 0.33 10
Pseudomonas fluorescens FW300-N1B4 0.56 Pf1N1B4_4062 FIG065221: Holliday junction DNA helicase 0.59 Pf1N1B4_2005 ATP-dependent DNA helicase UvrD/PcrA 0.31 5
Pseudomonas sp. S08-1 0.56 OH686_00270 Replication-associated recombination protein RarA 0.59 OH686_13045 ATP-dependent DNA helicase UvrD/PcrA low > 80
Pseudomonas sp. DMC3 0.56 GFF1532 Replication-associated recombination protein A 0.59 GFF512 DNA helicase II low > 89
Pseudomonas aeruginosa MRSN321 0.55 PFGADD_02407 Replication-associated recombination protein A 0.60 PFGADD_05702 uvrD DNA helicase II low > 99
Pseudomonas fluorescens GW456-L13 0.55 PfGW456L13_2653 FIG065221: Holliday junction DNA helicase 0.59 PfGW456L13_724 ATP-dependent DNA helicase UvrD/PcrA low > 87
Pseudomonas segetis P6 0.55 ACVTMO_RS12580 replication-associated recombination protein A 0.58 ACVTMO_RS00885 uvrD DNA helicase II low > 75
Pseudomonas aeruginosa PA14 0.55 IKLFDK_13115 recombination factor protein RarA 0.60 IKLFDK_26200 DNA helicase II low > 98
Pseudomonas aeruginosa PUPa3 0.55 NPBIFN_02446 Replication-associated recombination protein A 0.60 NPBIFN_05778 uvrD DNA helicase II low > 101
Pseudomonas fluorescens FW300-N2E3 0.55 AO353_27640 recombination factor protein RarA 0.59 AO353_10055 DNA helicase II 0.33 6
Pseudomonas fluorescens SBW25-INTG 0.55 PFLU_RS18520 replication-associated recombination protein A 0.59 PFLU_RS29900 DNA helicase II 0.19 38
Pseudomonas lactucae CFBP13502 0.55 GEMAOFIL_03623 Replication-associated recombination protein A 0.59 GEMAOFIL_00116 DNA helicase II low > 96
Pseudomonas fluorescens SBW25 0.55 PFLU_RS18520 replication-associated recombination protein A 0.59 PFLU_RS29900 DNA helicase II low > 109
Pseudomonas protegens RBAN4 0.55 FABNJH_20050 Replication-associated recombination protein A 0.59 FABNJH_31090 uvrD DNA helicase II — —
Kangiella aquimarina DSM 16071 0.55 B158DRAFT_1819 ATPase related to the helicase subunit of the Holliday junction resolvase 0.58 B158DRAFT_0238 Superfamily I DNA and RNA helicases 0.33 28
Pseudomonas orientalis W4I3 0.55 QF045_RS18235 replication-associated recombination protein A 0.59 QF045_RS02600 DNA helicase II low > 93
Pseudomonas stutzeri RCH2 0.55 Psest_2034 ATPase related to the helicase subunit of the Holliday junction resolvase 0.59 Psest_4098 Superfamily I DNA and RNA helicases 0.15 36
Paraburkholderia sabiae LMG 24235 0.50 QEN71_RS03415 replication-associated recombination protein A 0.44 QEN71_RS05110 3'-5' exonuclease — —
Ralstonia sp. UNC404CL21Col 0.50 ABZR87_RS16030 replication-associated recombination protein A 0.43 ABZR87_RS15705 UvrD-helicase domain-containing protein low > 80
Ralstonia solanacearum PSI07 0.49 RPSI07_RS13205 replication-associated recombination protein A 0.42 RPSI07_RS13455 DNA-dependent helicase — —
Methylophilus sp. DMC18 0.49 GFF351 Replication-associated recombination protein A 0.48 GFF1664 DNA helicase II low > 43
Burkholderia phytofirmans PsJN 0.49 BPHYT_RS05100 ATPase AAA 0.45 BPHYT_RS13840 DNA-dependent helicase — —
Ralstonia solanacearum IBSBF1503 0.49 RALBFv3_RS04145 replication-associated recombination protein A 0.42 RALBFv3_RS03775 DNA-dependent helicase — —
Ralstonia solanacearum UW163 0.49 UW163_RS09525 replication-associated recombination protein A 0.42 UW163_RS09895 DNA-dependent helicase — —
Paraburkholderia graminis OAS925 0.49 ABIE53_001292 putative ATPase 0.45 ABIE53_002936 DNA helicase-2/ATP-dependent DNA helicase PcrA — —
Cupriavidus basilensis FW507-4G11 0.49 RR42_RS04355 recombination factor protein RarA 0.44 RR42_RS15090 DNA helicase 0.39 39
Rhodanobacter sp000427505 FW510-R12 0.49 LRK53_RS11700 replication-associated recombination protein A 0.53 LRK53_RS01560 UvrD-helicase domain-containing protein — —
Rhodanobacter denitrificans FW104-10B01 0.49 LRK54_RS17320 replication-associated recombination protein A 0.54 LRK54_RS06850 DNA helicase II 0.22 28
Rhodanobacter sp. FW510-T8 0.49 OKGIIK_07580 rarA recombination factor protein RarA 0.55 OKGIIK_16775 DNA helicase 0.47 5
Paraburkholderia bryophila 376MFSha3.1 0.48 H281DRAFT_00180 Recombination protein MgsA 0.44 H281DRAFT_04469 ATP-dependent DNA helicase UvrD — —
Rhodanobacter denitrificans MT42 0.48 LRK55_RS17545 replication-associated recombination protein A 0.54 LRK55_RS06595 DNA helicase II — —
Ralstonia solanacearum GMI1000 0.48 RS_RS11735 replication-associated recombination protein A 0.42 RS_RS11220 DNA-dependent helicase low > 80
Xanthomonas campestris pv. campestris strain 8004 0.48 Xcc-8004.2744.1 FIG065221: Holliday junction DNA helicase 0.54 Xcc-8004.5114.1 ATP-dependent DNA helicase UvrD/PcrA low > 74
Variovorax sp. OAS795 0.48 ABID97_RS07835 replication-associated recombination protein A 0.44 ABID97_RS09150 UvrD-helicase domain-containing protein 0.27 57
Dyella japonica UNC79MFTsu3.2 0.48 ABZR86_RS01825 replication-associated recombination protein A 0.55 ABZR86_RS16965 DNA helicase II 0.88 7
Dechlorosoma suillum PS 0.48 Dsui_1694 AAA ATPase 0.45 Dsui_1227 DNA/RNA helicase, superfamily I low > 51
Variovorax sp. SCN45 0.47 GFF6034 Replication-associated recombination protein RarA 0.43 GFF4000 ATP-dependent DNA helicase UvrD/PcrA (EC 3.6.4.12) 0.43 53
Herbaspirillum seropedicae SmR1 0.47 HSERO_RS09515 ATPase AAA 0.43 HSERO_RS02160 DNA-dependent helicase low > 78
Acidovorax sp. GW101-3H11 0.47 Ac3H11_1696 FIG065221: Holliday junction DNA helicase 0.44 Ac3H11_1660 ATP-dependent DNA helicase UvrD/PcrA low > 79
Castellaniella sp019104865 MT123 0.47 ABCV34_RS07220 replication-associated recombination protein A 0.42 ABCV34_RS05210 UvrD-helicase domain-containing protein low > 48
Lysobacter sp. OAE881 0.45 ABIE51_RS11445 replication-associated recombination protein A 0.55 ABIE51_RS01985 DNA helicase II 0.80 1
Brevundimonas sp. GW460-12-10-14-LB2 0.41 A4249_RS07890 replication-associated recombination protein A 0.32 A4249_RS04960 UvrD-helicase domain-containing protein low > 48
Rhizobium sp. OAE497 0.41 ABIE40_RS08045 replication-associated recombination protein A 0.33 ABIE40_RS11670 UvrD-helicase domain-containing protein low > 107
Sinorhizobium meliloti 1021 0.41 SMc01279 recombination factor protein RarA 0.31 SMc01461 DNA helicase II protein 0.31 27
Azospirillum sp. SherDot2 0.41 MPMX19_01528 Replication-associated recombination protein A 0.34 MPMX19_01610 ATP-dependent DNA helicase PcrA low > 112
Dinoroseobacter shibae DFL-12 0.40 Dshi_0313 AAA ATPase central domain protein (RefSeq) 0.33 Dshi_2483 UvrD/REP helicase (RefSeq) — —
Azospirillum brasilense Sp245 0.40 AZOBR_RS06885 ATPase AAA 0.35 AZOBR_RS12445 DNA helicase II low > 97
Pontibacter actiniarum KMM 6156, DSM 19842 0.39 CA264_02215 AAA family ATPase 0.31 CA264_07795 ATP-dependent DNA helicase — —
Bacteroides ovatus ATCC 8483 0.39 BACOVA_03971 ATPase, AAA family 0.31 BACOVA_02365 UvrD/REP helicase low > 96
Phaeobacter inhibens DSM 17395 0.39 PGA1_c01930 replication-associated recombination protein A 0.34 PGA1_c09450 DNA helicase II UvrD low > 62
Magnetospirillum magneticum AMB-1 0.39 AMB_RS17620 replication-associated recombination protein A 0.34 AMB_RS03725 DNA helicase II low > 64
Rhodospirillum rubrum S1H 0.39 Rru_A2660 AAA ATPase, central region (NCBI) 0.32 Rru_A1536 UvrD/REP helicase (NCBI) low > 58
Phocaeicola dorei CL03T12C01 0.39 ABI39_RS20200 replication-associated recombination protein A 0.30 ABI39_RS17735 UvrD-helicase domain-containing protein — —
Parabacteroides merdae CL09T00C40 0.39 HMPREF1078_RS15395 replication-associated recombination protein A 0.31 HMPREF1078_RS03560 3'-5' exonuclease low > 61
Sphingobium sp. HT1-2 0.39 GFF39 Replication-associated recombination protein RarA 0.36 GFF1640 ATP-dependent DNA helicase UvrD/PcrA (EC 3.6.4.12) low > 95
Phocaeicola vulgatus CL09T03C04 0.39 HMPREF1058_RS06440 replication-associated recombination protein A 0.30 HMPREF1058_RS03305 UvrD-helicase domain-containing protein low > 67
Hydrogenophaga sp. GW460-11-11-14-LB1 0.38 GFF777 FIG065221: Holliday junction DNA helicase 0.42 GFF5598 ATP-dependent DNA helicase UvrD/PcrA — —
Bacteroides thetaiotaomicron VPI-5482 0.38 BT1205 putative ATPase, AAA family (NCBI ptt file) 0.31 BT0657 ATP-dependent DNA helicase (NCBI ptt file) — —
Pedobacter sp. GW460-11-11-14-LB5 0.38 CA265_RS22400 AAA family ATPase 0.31 CA265_RS12980 ATP-dependent DNA helicase — —
Bosea sp. OAE506 0.38 ABIE41_RS14690 replication-associated recombination protein A 0.35 ABIE41_RS12730 UvrD-helicase domain-containing protein low > 77
Bacteroides stercoris CC31F 0.38 HMPREF1181_RS16975 replication-associated recombination protein A 0.29 HMPREF1181_RS16505 UvrD-helicase domain-containing protein low > 56
Mucilaginibacter yixingensis YX-36 DSM 26809 0.38 ABZR88_RS20285 replication-associated recombination protein A 0.31 ABZR88_RS07840 ATP-dependent helicase — —
Echinicola vietnamensis KMM 6221, DSM 17526 0.37 Echvi_4603 ATPase related to the helicase subunit of the Holliday junction resolvase 0.33 Echvi_0292 Superfamily I DNA and RNA helicases — —
Cellulophaga baltica 18 0.36 M666_RS01075 replication-associated recombination protein A 0.30 M666_RS15390 3'-5' exonuclease — —
Mycobacterium tuberculosis H37Rv 0.34 Rv2559c Conserved hypothetical alanine leucine valine rich protein 0.33 Rv0949 Probable ATP-dependent DNA helicase II UvrD1 low > 58
Fusobacterium nucleatum SB010 0.30 HUW76_02735 replication-associated recombination protein A 0.29 HUW76_07175 UvrD-helicase domain-containing protein low > 35

Not shown: 11 genomes with orthologs for CSW01_05630 only; 3 genomes with orthologs for CSW01_01015 only