Conservation of cofitness between CSW01_02410 and CSW01_00560 in Vibrio cholerae E7946 ATCC 55056

98 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Vibrio cholerae E7946 ATCC 55056 1.0 CSW01_02410 adenine DNA glycosylase 1.0 CSW01_00560 DNA polymerase I 0.71 10
Serratia liquefaciens MT49 0.59 IAI46_21465 A/G-specific adenine glycosylase 0.66 IAI46_24985 DNA polymerase I low > 86
Dickeya dadantii 3937 0.58 DDA3937_RS04900 A/G-specific adenine glycosylase 0.63 DDA3937_RS00105 DNA polymerase I — —
Escherichia coli BW25113 0.57 b2961 mutY adenine DNA glycosylase (NCBI) 0.64 b3863 polA DNA polymerase I (NCBI) low > 76
Escherichia coli ECRC101 0.57 MCAODC_09720 mutY A/G-specific adenine glycosylase 0.64 MCAODC_04650 polA DNA polymerase I — —
Escherichia coli BL21 0.57 ECD_02791 adenine DNA glycosylase 0.64 ECD_03749 5 — —
Escherichia coli ECRC99 0.57 KEDOAH_08940 mutY A/G-specific adenine glycosylase 0.64 KEDOAH_14000 polA DNA polymerase I — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.57 OHPLBJKB_00755 Adenine DNA glycosylase 0.64 OHPLBJKB_04189 DNA polymerase I — —
Escherichia coli ECOR27 0.57 NOLOHH_11060 mutY A/G-specific adenine glycosylase 0.64 NOLOHH_06280 polA DNA polymerase I — —
Escherichia coli ECRC100 0.57 OKFHMN_19200 mutY A/G-specific adenine glycosylase 0.64 OKFHMN_14150 polA DNA polymerase I — —
Escherichia coli ECRC102 0.57 NIAGMN_16965 mutY A/G-specific adenine glycosylase 0.64 NIAGMN_11905 polA DNA polymerase I — —
Escherichia coli ECRC98 0.57 JDDGAC_22830 mutY A/G-specific adenine glycosylase 0.64 JDDGAC_17775 polA DNA polymerase I — —
Escherichia coli ECRC62 0.57 BNILDI_09645 mutY A/G-specific adenine glycosylase 0.64 BNILDI_05250 polA DNA polymerase I — —
Rahnella sp. WP5 0.57 EX31_RS02735 A/G-specific adenine glycosylase 0.65 EX31_RS15905 DNA polymerase I low > 89
Escherichia fergusonii Becca 0.57 EFB2_00941 Adenine DNA glycosylase 0.64 EFB2_04753 DNA polymerase I — —
Escherichia coli ECOR38 0.57 HEPCGN_18470 mutY A/G-specific adenine glycosylase 0.64 HEPCGN_12785 polA DNA polymerase I — —
Pectobacterium carotovorum WPP14 0.57 HER17_RS16625 A/G-specific adenine glycosylase 0.65 HER17_RS21470 DNA polymerase I — —
Escherichia coli Nissle 1917 0.57 ECOLIN_RS16470 A/G-specific adenine glycosylase 0.64 ECOLIN_RS22270 DNA polymerase I — —
Shewanella oneidensis MR-1 0.57 SO3368 mutY A/G-specific adenine glycosylase (NCBI ptt file) 0.62 SO4669 polA DNA polymerase I (NCBI ptt file) — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.57 GFF3065 A/G-specific adenine glycosylase (EC 3.2.2.-) 0.63 GFF2216 DNA polymerase I (EC 2.7.7.7) low > 78
Dickeya dianthicola ME23 0.56 DZA65_RS05245 A/G-specific adenine glycosylase 0.62 DZA65_RS22235 DNA polymerase I — —
Dickeya dianthicola 67-19 0.56 HGI48_RS04910 A/G-specific adenine glycosylase 0.63 HGI48_RS21260 DNA polymerase I — —
Enterobacter asburiae PDN3 0.56 EX28DRAFT_2998 A/G-specific DNA-adenine glycosylase (EC 3.2.2.-) 0.64 EX28DRAFT_4343 DNA polymerase I (EC 2.7.7.7) — —
Enterobacter sp. TBS_079 0.55 MPMX20_03818 Adenine DNA glycosylase 0.64 MPMX20_04601 DNA polymerase I low > 85
Shewanella sp. ANA-3 0.55 Shewana3_1181 A/G-specific DNA-adenine glycosylase (RefSeq) 0.62 Shewana3_4109 DNA polymerase I (RefSeq) — —
Erwinia amylovora T8 0.55 OLJFJH_08495 A/G-specific adenine glycosylase 0.64 OLJFJH_05470 DNA polymerase I 0.31 32
Erwinia tracheiphila SCR3 0.55 LU632_RS05420 mutY A/G-specific adenine glycosylase 0.64 LU632_RS23870 polA DNA polymerase I — —
Klebsiella michiganensis M5al 0.55 BWI76_RS24155 A/G-specific adenine glycosylase 0.63 BWI76_RS00355 DNA polymerase I low > 92
Pantoea sp. MT58 0.55 IAI47_03560 A/G-specific adenine glycosylase 0.65 IAI47_00430 DNA polymerase I low > 76
Shewanella amazonensis SB2B 0.54 Sama_2490 A/G-specific adenine glycosylase (RefSeq) 0.63 Sama_0093 DNA-directed DNA polymerase (RefSeq) low > 62
Shewanella loihica PV-4 0.53 Shew_1123 A/G-specific adenine glycosylase (RefSeq) 0.63 Shew_3714 DNA polymerase I (RefSeq) low > 60
Alteromonas macleodii MIT1002 0.53 MIT1002_00239 A/G-specific adenine glycosylase 0.62 MIT1002_00014 DNA polymerase I low > 70
Marinobacter adhaerens HP15 0.49 HP15_3015 A/G-specific adenine glycosylase-like protein 0.52 HP15_293 DNA polymerase I low > 73
Pseudomonas sp. DMC3 0.47 GFF4102 Adenine DNA glycosylase 0.55 GFF631 DNA polymerase I low > 89
Pseudomonas syringae pv. syringae B728a ΔmexB 0.47 Psyr_4901 A/G-specific DNA-adenine glycosylase 0.55 Psyr_0270 DNA polymerase I low > 86
Pseudomonas sp. S08-1 0.47 OH686_14550 A/G-specific adenine glycosylase 0.57 OH686_12215 DNA polymerase I low > 80
Pseudomonas syringae pv. syringae B728a 0.47 Psyr_4901 A/G-specific DNA-adenine glycosylase 0.55 Psyr_0270 DNA polymerase I 0.33 25
Kangiella aquimarina DSM 16071 0.47 B158DRAFT_0205 A/G-specific DNA-adenine glycosylase (EC 3.2.2.-) 0.59 B158DRAFT_0499 DNA polymerase I (EC 2.7.7.7) low > 40
Pseudomonas sp. SVBP6 0.47 COO64_RS00245 mutY A/G-specific adenine glycosylase 0.57 COO64_RS02475 polA DNA polymerase I low > 93
Pseudomonas simiae WCS417 0.47 PS417_01545 adenine glycosylase 0.56 PS417_00405 DNA polymerase I low > 88
Pseudomonas fluorescens SBW25-INTG 0.47 PFLU_RS01590 A/G-specific adenine glycosylase 0.55 PFLU_RS00395 DNA polymerase I low > 109
Pseudomonas fluorescens SBW25 0.47 PFLU_RS01590 A/G-specific adenine glycosylase 0.55 PFLU_RS00395 DNA polymerase I low > 109
Pseudomonas putida KT2440 0.46 PP_0286 adenine glycosylase 0.58 PP_0123 DNA polymerase I, 5 low > 96
Pseudomonas fluorescens FW300-N2E3 0.46 AO353_12050 A/G-specific adenine glycosylase 0.56 AO353_10930 DNA polymerase I low > 101
Pseudomonas fluorescens FW300-N1B4 0.46 Pf1N1B4_1631 A/G-specific adenine glycosylase (EC 3.2.2.-) 0.55 Pf1N1B4_1875 DNA polymerase I (EC 2.7.7.7) — —
Paraburkholderia graminis OAS925 0.46 ABIE53_000712 A/G-specific adenine glycosylase 0.51 ABIE53_004852 DNA polymerase-1 low > 113
Pseudomonas fluorescens GW456-L13 0.46 PfGW456L13_366 A/G-specific adenine glycosylase (EC 3.2.2.-) 0.54 PfGW456L13_594 DNA polymerase I (EC 2.7.7.7) low > 87
Pseudomonas sp. BP01 0.45 JOY50_RS25485 mutY A/G-specific adenine glycosylase 0.58 JOY50_RS21110 polA DNA polymerase I low > 84
Paraburkholderia bryophila 376MFSha3.1 0.45 H281DRAFT_01933 A/G-specific DNA-adenine glycosylase 0.51 H281DRAFT_06022 DNA polymerase I low > 103
Burkholderia phytofirmans PsJN 0.45 BPHYT_RS02875 adenine glycosylase 0.51 BPHYT_RS33610 DNA polymerase I low > 109
Pseudomonas fluorescens FW300-N2C3 0.45 AO356_09830 A/G-specific adenine glycosylase 0.55 AO356_11465 DNA polymerase I low > 104
Pseudomonas fluorescens FW300-N2E2 0.45 Pf6N2E2_3846 A/G-specific adenine glycosylase (EC 3.2.2.-) 0.54 Pf6N2E2_4162 DNA polymerase I (EC 2.7.7.7) low > 103
Pseudomonas stutzeri RCH2 0.45 Psest_0145 A/G-specific adenine glycosylase 0.58 Psest_4219 DNA polymerase I low > 67
Pseudomonas sp. RS175 0.44 PFR28_04925 Adenine DNA glycosylase 0.54 PFR28_04624 DNA polymerase I low > 88
Herbaspirillum seropedicae SmR1 0.44 HSERO_RS19540 adenine glycosylase 0.53 HSERO_RS02260 DNA polymerase I low > 78
Pseudomonas aeruginosa PA14 0.44 IKLFDK_27760 A/G-specific adenine glycosylase 0.58 IKLFDK_25945 DNA polymerase I low > 101
Rhodanobacter sp. FW510-T8 0.43 OKGIIK_02565 mutY A/G-specific adenine glycosylase 0.52 OKGIIK_16785 polA DNA polymerase I low > 52
Ralstonia solanacearum GMI1000 0.43 RS_RS01985 A/G-specific adenine glycosylase 0.52 RS_RS11195 DNA polymerase I low > 80
Rhodanobacter denitrificans FW104-10B01 0.43 LRK54_RS13325 A/G-specific adenine glycosylase 0.52 LRK54_RS06840 DNA polymerase I low > 59
Ralstonia solanacearum PSI07 0.43 RPSI07_RS22165 A/G-specific adenine glycosylase 0.52 RPSI07_RS13480 DNA polymerase I low > 81
Rhodanobacter denitrificans MT42 0.43 LRK55_RS13065 A/G-specific adenine glycosylase 0.52 LRK55_RS06585 DNA polymerase I low > 63
Ralstonia solanacearum IBSBF1503 0.42 RALBFv3_RS11135 A/G-specific adenine glycosylase 0.52 RALBFv3_RS03750 DNA polymerase I low > 76
Ralstonia solanacearum UW163 0.42 UW163_RS02445 A/G-specific adenine glycosylase 0.52 UW163_RS09920 DNA polymerase I — —
Dyella japonica UNC79MFTsu3.2 0.42 ABZR86_RS19975 A/G-specific adenine glycosylase 0.52 ABZR86_RS17015 DNA polymerase I low > 74
Methylophilus sp. DMC18 0.41 GFF2028 Adenine DNA glycosylase 0.52 GFF1658 DNA polymerase I low > 43
Ralstonia sp. UNC404CL21Col 0.41 ABZR87_RS07025 A/G-specific adenine glycosylase 0.52 ABZR87_RS15680 DNA polymerase I low > 80
Paraburkholderia sabiae LMG 24235 0.41 QEN71_RS01725 A/G-specific adenine glycosylase 0.52 QEN71_RS17885 DNA polymerase I — —
Rhodanobacter sp000427505 FW510-R12 0.40 LRK53_RS15255 A/G-specific adenine glycosylase 0.52 LRK53_RS01570 DNA polymerase I low > 60
Dechlorosoma suillum PS 0.40 Dsui_0998 A/G-specific adenine glycosylase 0.52 Dsui_0459 DNA polymerase I low > 51
Xanthomonas campestris pv. campestris strain 8004 0.39 Xcc-8004.2122.1 A/G-specific adenine glycosylase (EC 3.2.2.-) 0.49 Xcc-8004.5105.1 DNA polymerase I (EC 2.7.7.7) — —
Variovorax sp. SCN45 0.39 GFF2355 A/G-specific adenine glycosylase (EC 3.2.2.-) 0.48 GFF4006 DNA polymerase I (EC 2.7.7.7) low > 127
Lysobacter sp. OAE881 0.39 ABIE51_RS15140 A/G-specific adenine glycosylase 0.49 ABIE51_RS02010 DNA polymerase I low > 62
Variovorax sp. OAS795 0.39 ABID97_RS23715 A/G-specific adenine glycosylase 0.47 ABID97_RS09180 DNA polymerase I low > 91
Cupriavidus basilensis FW507-4G11 0.38 RR42_RS02050 adenine glycosylase 0.51 RR42_RS15050 DNA polymerase I low > 128
Acidovorax sp. GW101-3H11 0.37 Ac3H11_3458 A/G-specific adenine glycosylase (EC 3.2.2.-) 0.48 Ac3H11_1648 DNA polymerase I (EC 2.7.7.7) — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.34 GFF827 A/G-specific adenine glycosylase (EC 3.2.2.-) 0.45 GFF5584 DNA polymerase I (EC 2.7.7.7) low > 90
Castellaniella sp019104865 MT123 0.34 ABCV34_RS10845 A/G-specific adenine glycosylase 0.47 ABCV34_RS02195 DNA polymerase I low > 48
Acinetobacter radioresistens SK82 0.34 MPMX26_02995 Adenine DNA glycosylase 0.46 MPMX26_00574 DNA polymerase I low > 36
Synechococcus elongatus PCC 7942 0.32 Synpcc7942_0673 mutT A/G-specific DNA-adenine glycosylase 0.29 Synpcc7942_0194 polA DNA polymerase I — —
Bosea sp. OAE506 0.31 ABIE41_RS22845 A/G-specific adenine glycosylase 0.34 ABIE41_RS03570 DNA polymerase I low > 77
Azospirillum brasilense Sp245 0.31 AZOBR_RS20275 adenine glycosylase 0.38 AZOBR_RS30685 DNA polymerase low > 97
Rhodospirillum rubrum S1H 0.31 Rru_A3251 A/G-specific adenine glycosylase MutY (NCBI) 0.34 Rru_A3514 DNA polymerase A (NCBI) — —
Azospirillum sp. SherDot2 0.30 MPMX19_04892 Adenine DNA glycosylase 0.39 MPMX19_04869 DNA polymerase I low > 112
Cellulophaga baltica 18 0.30 M666_RS03315 A/G-specific adenine glycosylase 0.35 M666_RS07555 DNA polymerase I low > 67
Pontibacter actiniarum KMM 6156, DSM 19842 0.30 CA264_14995 A/G-specific adenine glycosylase 0.35 CA264_16535 DNA polymerase I — —
Magnetospirillum magneticum AMB-1 0.29 AMB_RS20165 A/G-specific adenine glycosylase 0.39 AMB_RS21305 DNA polymerase I — —
Parabacteroides merdae CL09T00C40 0.29 HMPREF1078_RS14175 A/G-specific adenine glycosylase 0.37 HMPREF1078_RS06335 DNA polymerase I low > 61
Agrobacterium fabrum C58 0.29 Atu0798 A/G-specific adenine glycosylase 0.38 Atu0110 DNA polymerase I — —
Sinorhizobium meliloti 1021 0.29 SMc00452 A/G-specific adenine glycosylase 0.29 SMc02850 DNA polymerase I low > 103
Echinicola vietnamensis KMM 6221, DSM 17526 0.29 Echvi_1248 A/G-specific adenine glycosylase 0.36 Echvi_1032 DNA polymerase I low > 79
Rhizobium sp. OAE497 0.28 ABIE40_RS04290 A/G-specific adenine glycosylase 0.38 ABIE40_RS00490 DNA polymerase I low > 107
Brevundimonas sp. GW460-12-10-14-LB2 0.27 A4249_RS01570 A/G-specific adenine glycosylase 0.38 A4249_RS13840 DNA polymerase I — —
Sphingomonas koreensis DSMZ 15582 0.27 Ga0059261_2317 A/G-specific DNA-adenine glycosylase (EC 3.2.2.-) 0.35 Ga0059261_2244 DNA polymerase I (EC 2.7.7.7) low > 68
Pedobacter sp. GW460-11-11-14-LB5 0.26 CA265_RS22680 A/G-specific adenine glycosylase 0.34 CA265_RS19630 DNA polymerase I 0.27 72
Mucilaginibacter yixingensis YX-36 DSM 26809 0.26 ABZR88_RS20430 A/G-specific adenine glycosylase 0.34 ABZR88_RS20185 DNA polymerase I low > 71
Phaeobacter inhibens DSM 17395 0.25 PGA1_c33540 A/G-specific adenine glycosylase MutY 0.39 PGA1_c31780 DNA polymerase I low > 62
Dinoroseobacter shibae DFL-12 0.24 Dshi_0028 A/G-specific adenine glycosylase (RefSeq) 0.39 Dshi_2909 DNA polymerase I (RefSeq) low > 64
Caulobacter crescentus NA1000 0.24 CCNA_00381 A/G-specific adenine DNA glycosylase 0.39 CCNA_03577 DNA polymerase I low > 66
Caulobacter crescentus NA1000 Δfur 0.24 CCNA_00381 A/G-specific adenine DNA glycosylase 0.39 CCNA_03577 DNA polymerase I 0.64 20

Not shown: 1 genomes with orthologs for CSW01_02410 only; 10 genomes with orthologs for CSW01_00560 only