Conservation of cofitness between CA265_RS02960 and CA265_RS08910 in Pedobacter sp. GW460-11-11-14-LB5

97 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pedobacter sp. GW460-11-11-14-LB5 1.0 CA265_RS02960 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 1.0 CA265_RS08910 3-deoxy-8-phosphooctulonate synthase 0.64 14
Mucilaginibacter yixingensis YX-36 DSM 26809 0.56 ABZR88_RS17470 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.47 ABZR88_RS12815 3-deoxy-8-phosphooctulonate synthase — —
Pontibacter actiniarum KMM 6156, DSM 19842 0.55 CA264_12070 tRNA dimethylallyltransferase 0.80 CA264_04715 3-deoxy-8-phosphooctulonate synthase — —
Echinicola vietnamensis KMM 6221, DSM 17526 0.52 Echvi_2323 tRNA dimethylallyltransferase 0.43 Echvi_2131 3-deoxy-8-phosphooctulonate synthase — —
Bacteroides ovatus ATCC 8483 0.49 BACOVA_05050 tRNA dimethylallyltransferase 0.73 BACOVA_05121 3-deoxy-8-phosphooctulonate synthase — —
Phocaeicola vulgatus CL09T03C04 0.49 HMPREF1058_RS08065 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.72 HMPREF1058_RS06065 3-deoxy-8-phosphooctulonate synthase — —
Bacteroides thetaiotaomicron VPI-5482 0.49 BT4203 tRNA delta(2)-isopentenylpyrophosphate transferase (NCBI ptt file) 0.73 BT4321 2-dehydro-3-deoxyphosphooctonate aldolase (NCBI ptt file) — —
Bacteroides stercoris CC31F 0.49 HMPREF1181_RS06385 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.71 HMPREF1181_RS05975 3-deoxy-8-phosphooctulonate synthase — —
Phocaeicola dorei CL03T12C01 0.49 ABI39_RS00520 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.71 ABI39_RS17960 3-deoxy-8-phosphooctulonate synthase — —
Parabacteroides merdae CL09T00C40 0.48 HMPREF1078_RS13930 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.72 HMPREF1078_RS15875 3-deoxy-8-phosphooctulonate synthase — —
Xanthomonas campestris pv. campestris strain 8004 0.33 Xcc-8004.3121.1 tRNA dimethylallyltransferase (EC 2.5.1.75) 0.42 Xcc-8004.3144.1 2-Keto-3-deoxy-D-manno-octulosonate-8-phosphate synthase (EC 2.5.1.55) — —
Lysobacter sp. OAE881 0.33 ABIE51_RS06535 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.41 ABIE51_RS06440 3-deoxy-8-phosphooctulonate synthase — —
Rahnella sp. WP5 0.33 EX31_RS08825 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.42 EX31_RS07295 3-deoxy-8-phosphooctulonate synthase — —
Kangiella aquimarina DSM 16071 0.33 B158DRAFT_1951 tRNA dimethylallyltransferase 0.42 B158DRAFT_2282 3-deoxy-8-phosphooctulonate synthase — —
Fusobacterium nucleatum SB010 0.32 HUW76_01190 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.47 HUW76_04120 3-deoxy-8-phosphooctulonate synthase — —
Herbaspirillum seropedicae SmR1 0.32 HSERO_RS04185 tRNA delta(2)-isopentenylpyrophosphate transferase 0.43 HSERO_RS13915 2-dehydro-3-deoxyphosphooctonate aldolase — —
Vibrio cholerae E7946 ATCC 55056 0.32 CSW01_01830 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.41 CSW01_10825 3-deoxy-8-phosphooctulonate synthase — —
Shewanella loihica PV-4 0.32 Shew_0565 tRNA delta(2)-isopentenylpyrophosphate transferase (RefSeq) 0.43 Shew_2904 2-dehydro-3-deoxyphosphooctonate aldolase (RefSeq) — —
Escherichia fergusonii Becca 0.32 EFB2_04364 tRNA dimethylallyltransferase 0.42 EFB2_02712 2-dehydro-3-deoxyphosphooctonate aldolase — —
Escherichia coli Nissle 1917 0.32 ECOLIN_RS24225 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.42 ECOLIN_RS07340 3-deoxy-8-phosphooctulonate synthase — —
Rhodanobacter denitrificans MT42 0.31 LRK55_RS00405 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.39 LRK55_RS16335 3-deoxy-8-phosphooctulonate synthase — —
Serratia liquefaciens MT49 0.31 IAI46_01620 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.43 IAI46_10300 3-deoxy-8-phosphooctulonate synthase — —
Pectobacterium carotovorum WPP14 0.31 HER17_RS02580 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.43 HER17_RS10500 3-deoxy-8-phosphooctulonate synthase — —
Escherichia coli BL21 0.31 ECD_04038 delta(2)-isopentenylpyrophosphate tRNA-adenosine transferase 0.42 ECD_01190 3-deoxy-D-manno-octulosonate 8-phosphate synthase — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.31 OHPLBJKB_03871 tRNA dimethylallyltransferase 0.42 OHPLBJKB_02472 2-dehydro-3-deoxyphosphooctonate aldolase — —
Escherichia coli ECOR38 0.31 HEPCGN_10490 miaA tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.42 HEPCGN_24935 kdsA 3-deoxy-8-phosphooctulonate synthase — —
Shewanella oneidensis MR-1 0.31 SO0602 miaA tRNA delta(2)-isopentenylpyrophosphate transferase (NCBI ptt file) 0.44 SO3827 kdsA 2-dehydro-3-deoxyphosphooctonate aldolase (NCBI ptt file) — —
Escherichia coli ECOR27 0.31 NOLOHH_04525 miaA tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.42 NOLOHH_20590 kdsA 3-deoxy-8-phosphooctulonate synthase — —
Escherichia coli BW25113 0.31 b4171 miaA tRNA delta(2)-isopentenylpyrophosphate transferase (NCBI) 0.42 b1215 kdsA 2-dehydro-3-deoxyphosphooctonate aldolase (NCBI) — —
Rhodanobacter denitrificans FW104-10B01 0.31 LRK54_RS00635 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.39 LRK54_RS16610 3-deoxy-8-phosphooctulonate synthase — —
Escherichia coli ECRC102 0.31 NIAGMN_10110 miaA tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.42 NIAGMN_27765 kdsA 3-deoxy-8-phosphooctulonate synthase — —
Klebsiella michiganensis M5al 0.31 BWI76_RS02530 tRNA dimethylallyltransferase 0.42 BWI76_RS17415 3-deoxy-8-phosphooctulonate synthase — —
Escherichia coli ECRC62 0.31 BNILDI_06965 miaA tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.42 BNILDI_18745 kdsA 3-deoxy-8-phosphooctulonate synthase — —
Escherichia coli ECRC99 0.31 KEDOAH_15895 miaA tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.42 KEDOAH_25465 kdsA 3-deoxy-8-phosphooctulonate synthase — —
Shewanella sp. ANA-3 0.31 Shewana3_0596 miaA tRNA delta(2)-isopentenylpyrophosphate transferase (RefSeq) 0.44 Shewana3_0775 2-dehydro-3-deoxyphosphooctonate aldolase (RefSeq) — —
Escherichia coli ECRC101 0.31 MCAODC_02775 miaA tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.42 MCAODC_21790 kdsA 3-deoxy-8-phosphooctulonate synthase — —
Escherichia coli ECRC100 0.31 OKFHMN_12260 miaA tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.42 OKFHMN_28470 kdsA 3-deoxy-8-phosphooctulonate synthase — —
Escherichia coli ECRC98 0.31 JDDGAC_15900 miaA tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.42 JDDGAC_06105 kdsA 3-deoxy-8-phosphooctulonate synthase — —
Rhodanobacter sp. FW510-T8 0.31 OKGIIK_06625 miaA tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.38 OKGIIK_08160 kdsA 3-deoxy-8-phosphooctulonate synthase — —
Enterobacter asburiae PDN3 0.31 EX28DRAFT_3368 tRNA dimethylallyltransferase 0.43 EX28DRAFT_0834 3-deoxy-8-phosphooctulonate synthase — —
Enterobacter sp. TBS_079 0.31 MPMX20_00452 tRNA dimethylallyltransferase 0.42 MPMX20_02632 2-dehydro-3-deoxyphosphooctonate aldolase — —
Dickeya dianthicola ME23 0.31 DZA65_RS19685 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.41 DZA65_RS11385 3-deoxy-8-phosphooctulonate synthase — —
Dickeya dianthicola 67-19 0.31 HGI48_RS18550 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.41 HGI48_RS10925 3-deoxy-8-phosphooctulonate synthase — —
Pantoea sp. MT58 0.30 IAI47_02585 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.41 IAI47_11250 3-deoxy-8-phosphooctulonate synthase — —
Paraburkholderia bryophila 376MFSha3.1 0.30 H281DRAFT_04711 tRNA dimethylallyltransferase 0.39 H281DRAFT_00496 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) — —
Pseudomonas putida KT2440 0.30 PP_4895 tRNA dimethylallyltransferase 0.44 PP_1611 2-dehydro-3-deoxyphosphooctonate aldolase low > 96
Dickeya dadantii 3937 0.30 DDA3937_RS18615 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.40 DDA3937_RS10975 3-deoxy-8-phosphooctulonate synthase — —
Dyella japonica UNC79MFTsu3.2 0.30 ABZR86_RS08370 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.44 ABZR86_RS06635 3-deoxy-8-phosphooctulonate synthase — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.30 GFF824 tRNA dimethylallyltransferase (EC 2.5.1.75) 0.43 GFF2770 2-Keto-3-deoxy-D-manno-octulosonate-8-phosphate synthase (EC 2.5.1.55) — —
Castellaniella sp019104865 MT123 0.30 ABCV34_RS08790 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.42 ABCV34_RS00795 3-deoxy-8-phosphooctulonate synthase — —
Shewanella amazonensis SB2B 0.30 Sama_3026 miaA tRNA delta(2)-isopentenylpyrophosphate transferase (RefSeq) 0.44 Sama_2561 2-dehydro-3-deoxyphosphooctonate aldolase (RefSeq) — —
Paraburkholderia sabiae LMG 24235 0.30 QEN71_RS26440 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.43 QEN71_RS05875 3-deoxy-8-phosphooctulonate synthase — —
Sinorhizobium meliloti 1021 0.30 SMc01435 tRNA delta(2)-isopentenylpyrophosphate transferase 0.37 SMc01027 2-dehydro-3-deoxyphosphooctonate aldolase — —
Burkholderia phytofirmans PsJN 0.29 BPHYT_RS03645 tRNA dimethylallyltransferase 0.44 BPHYT_RS12680 2-dehydro-3-deoxyphosphooctonate aldolase — —
Alteromonas macleodii MIT1002 0.29 MIT1002_03789 tRNA dimethylallyltransferase 0.43 MIT1002_01518 2-dehydro-3-deoxyphosphooctonate aldolase — —
Variovorax sp. OAS795 0.29 ABID97_RS20320 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.44 ABID97_RS20185 3-deoxy-8-phosphooctulonate synthase — —
Pseudomonas syringae pv. syringae B728a 0.29 Psyr_0571 tRNA isopentenyltransferase 0.44 Psyr_1362 2-dehydro-3-deoxyphosphooctonate aldolase — —
Desulfovibrio vulgaris Miyazaki F 0.29 DvMF_0174 tRNA delta(2)-isopentenylpyrophosphate transferase (RefSeq) 0.44 DvMF_0432 2-dehydro-3-deoxyphosphooctonate aldolase (RefSeq) — —
Synechococcus elongatus PCC 7942 0.29 Synpcc7942_2490 miaA tRNA delta(2)-isopentenylpyrophosphate transferase 0.50 Synpcc7942_2289 ccmA 2-dehydro-3-deoxyphosphooctonate aldolase — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.29 Psyr_0571 tRNA isopentenyltransferase 0.44 Psyr_1362 2-dehydro-3-deoxyphosphooctonate aldolase — —
Ralstonia solanacearum GMI1000 0.29 RS_RS12855 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.42 RS_RS05610 2-dehydro-3-deoxyphosphooctonate aldolase — —
Pseudomonas stutzeri RCH2 0.29 Psest_0682 tRNA dimethylallyltransferase 0.44 Psest_2823 3-deoxy-8-phosphooctulonate synthase — —
Erwinia tracheiphila SCR3 0.29 LU632_RS02050 miaA tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.41 LU632_RS10750 kdsA 3-deoxy-8-phosphooctulonate synthase — —
Ralstonia solanacearum PSI07 0.28 RPSI07_RS12065 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.42 RPSI07_RS18560 3-deoxy-8-phosphooctulonate synthase — —
Paraburkholderia graminis OAS925 0.28 ABIE53_000875 tRNA dimethylallyltransferase 0.39 ABIE53_002763 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) — —
Pseudomonas sp. RS175 0.28 PFR28_05120 tRNA dimethylallyltransferase 0.43 PFR28_00415 2-dehydro-3-deoxyphosphooctonate aldolase — —
Pseudomonas fluorescens FW300-N2E2 0.28 Pf6N2E2_3615 tRNA dimethylallyltransferase (EC 2.5.1.75) 0.44 Pf6N2E2_3049 2-Keto-3-deoxy-D-manno-octulosonate-8-phosphate synthase (EC 2.5.1.55) — —
Ralstonia sp. UNC404CL21Col 0.28 ABZR87_RS00875 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.42 ABZR87_RS10460 3-deoxy-8-phosphooctulonate synthase — —
Pseudomonas fluorescens FW300-N2C3 0.28 AO356_08660 tRNA dimethylallyltransferase 0.44 AO356_05945 2-dehydro-3-deoxyphosphooctonate aldolase — —
Ralstonia solanacearum UW163 0.28 UW163_RS08390 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.42 UW163_RS12270 3-deoxy-8-phosphooctulonate synthase — —
Dechlorosoma suillum PS 0.28 Dsui_1552 tRNA isopentenyltransferase MiaA 0.44 Dsui_2314 3-deoxy-8-phosphooctulonate synthase — —
Pseudomonas fluorescens FW300-N2E3 0.28 AO353_13140 tRNA dimethylallyltransferase 0.43 AO353_16555 2-dehydro-3-deoxyphosphooctonate aldolase — —
Ralstonia solanacearum IBSBF1503 0.28 RALBFv3_RS05235 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.42 RALBFv3_RS14800 3-deoxy-8-phosphooctulonate synthase — —
Rhizobium sp. OAE497 0.27 ABIE40_RS11505 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.38 ABIE40_RS08990 3-deoxy-8-phosphooctulonate synthase — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.27 GFF5491 tRNA dimethylallyltransferase (EC 2.5.1.75) 0.40 GFF5441 2-Keto-3-deoxy-D-manno-octulosonate-8-phosphate synthase (EC 2.5.1.55) — —
Pseudomonas simiae WCS417 0.27 PS417_02485 tRNA delta(2)-isopentenylpyrophosphate transferase 0.43 PS417_06305 2-dehydro-3-deoxyphosphooctonate aldolase — —
Pseudomonas fluorescens GW456-L13 0.27 PfGW456L13_155 tRNA dimethylallyltransferase (EC 2.5.1.75) 0.44 PfGW456L13_4687 2-Keto-3-deoxy-D-manno-octulosonate-8-phosphate synthase (EC 2.5.1.55) — —
Variovorax sp. SCN45 0.27 GFF4798 tRNA dimethylallyltransferase (EC 2.5.1.75) 0.45 GFF758 2-Keto-3-deoxy-D-manno-octulosonate-8-phosphate synthase (EC 2.5.1.55) — —
Pseudomonas fluorescens FW300-N1B4 0.27 Pf1N1B4_1413 tRNA dimethylallyltransferase (EC 2.5.1.75) 0.44 Pf1N1B4_3103 2-Keto-3-deoxy-D-manno-octulosonate-8-phosphate synthase (EC 2.5.1.55) — —
Pseudomonas fluorescens SBW25 0.27 PFLU_RS02565 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.43 PFLU_RS06370 3-deoxy-8-phosphooctulonate synthase — —
Cupriavidus basilensis FW507-4G11 0.27 RR42_RS17210 tRNA delta(2)-isopentenylpyrophosphate transferase 0.39 RR42_RS06165 2-dehydro-3-deoxyphosphooctonate aldolase — —
Pseudomonas fluorescens SBW25-INTG 0.27 PFLU_RS02565 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.43 PFLU_RS06370 3-deoxy-8-phosphooctulonate synthase — —
Caulobacter crescentus NA1000 Δfur 0.27 CCNA_02183 tRNA delta(2)-isopentenylpyrophosphate transferase 0.40 CCNA_01496 2-dehydro-3-deoxyphosphooctonate aldolase — —
Caulobacter crescentus NA1000 0.27 CCNA_02183 tRNA delta(2)-isopentenylpyrophosphate transferase 0.40 CCNA_01496 2-dehydro-3-deoxyphosphooctonate aldolase — —
Desulfovibrio vulgaris Hildenborough JW710 0.27 DVU1533 miaA tRNA delta(2)-isopentenylpyrophosphate transferase (TIGR) 0.46 DVU1624 kdsA 2-dehydro-3-deoxyphosphooctonate aldolase (TIGR) — —
Acinetobacter radioresistens SK82 0.27 MPMX26_01208 tRNA dimethylallyltransferase 0.41 MPMX26_01681 2-dehydro-3-deoxyphosphooctonate aldolase — —
Pseudomonas sp. S08-1 0.27 OH686_09475 tRNA dimethylallyltransferase 0.44 OH686_06390 3-deoxy-8-phosphooctulonate synthase — —
Rhodopseudomonas palustris CGA009 0.26 TX73_010460 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.40 TX73_014920 3-deoxy-8-phosphooctulonate synthase — —
Acidovorax sp. GW101-3H11 0.26 Ac3H11_319 tRNA dimethylallyltransferase (EC 2.5.1.75) 0.41 Ac3H11_289 2-Keto-3-deoxy-D-manno-octulosonate-8-phosphate synthase (EC 2.5.1.55) — —
Brevundimonas sp. GW460-12-10-14-LB2 0.25 A4249_RS05030 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.37 A4249_RS05615 3-deoxy-8-phosphooctulonate synthase — —
Agrobacterium fabrum C58 0.25 Atu2039 tRNA delta(2)-isopentenylpyrophosphate 0.40 Atu1424 2-dehydro-3-deoxyphosphooctonate aldolase — —
Magnetospirillum magneticum AMB-1 0.24 AMB_RS17735 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.42 AMB_RS09220 3-deoxy-8-phosphooctulonate synthase — —
Azospirillum sp. SherDot2 0.24 MPMX19_01778 tRNA dimethylallyltransferase 0.41 MPMX19_01236 2-dehydro-3-deoxyphosphooctonate aldolase — —
Azospirillum brasilense Sp245 0.22 AZOBR_RS06550 tRNA delta(2)-isopentenylpyrophosphate transferase 0.41 AZOBR_RS07520 2-dehydro-3-deoxyphosphooctonate aldolase — —
Dinoroseobacter shibae DFL-12 0.22 Dshi_1492 tRNA delta(2)-isopentenylpyrophosphate transferase (RefSeq) 0.41 Dshi_0583 2-dehydro-3-deoxyphosphooctonate aldolase (RefSeq) — —
Bosea sp. OAE506 0.22 ABIE41_RS12880 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 0.39 ABIE41_RS18245 3-deoxy-8-phosphooctulonate synthase — —
Phaeobacter inhibens DSM 17395 0.20 PGA1_c14200 tRNA delta(2)-isopentenylpyrophosphate transferase MiaA 0.44 PGA1_c24330 2-dehydro-3-deoxyphosphooctonate aldolase KdsA — —
Rhodospirillum rubrum S1H 0.18 Rru_A0466 tRNA isopentenyltransferase (NCBI) 0.42 Rru_A1886 2-dehydro-3-deoxyphosphooctonate aldolase (NCBI) — —

Not shown: 3 genomes with orthologs for CA265_RS02960 only; 1 genomes with orthologs for CA265_RS08910 only