Conservation of cofitness between BPHYT_RS18705 and BPHYT_RS33915 in Burkholderia phytofirmans PsJN

96 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Burkholderia phytofirmans PsJN 1.0 BPHYT_RS18705 5,10-methylenetetrahydrofolate reductase 1.0 BPHYT_RS33915 isopropylmalate isomerase 0.56 5
Paraburkholderia graminis OAS925 0.97 ABIE53_000061 methylenetetrahydrofolate reductase (NADPH) 0.96 ABIE53_004801 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit 0.92 5
Paraburkholderia bryophila 376MFSha3.1 0.96 H281DRAFT_05801 5,10-methylenetetrahydrofolate reductase (NAD(P)) 0.97 H281DRAFT_06075 3-isopropylmalate dehydratase, large subunit 0.63 15
Paraburkholderia sabiae LMG 24235 0.92 QEN71_RS28715 methylenetetrahydrofolate reductase [NAD(P)H] 0.95 QEN71_RS17605 3-isopropylmalate dehydratase large subunit 0.88 28
Ralstonia solanacearum GMI1000 0.80 RS_RS00460 methylenetetrahydrofolate reductase [NAD(P)H] 0.87 RS_RS10000 3-isopropylmalate dehydratase large subunit 0.51 42
Cupriavidus basilensis FW507-4G11 0.80 RR42_RS01385 5,10-methylenetetrahydrofolate reductase 0.86 RR42_RS14400 isopropylmalate isomerase 0.77 17
Ralstonia solanacearum IBSBF1503 0.79 RALBFv3_RS09875 methylenetetrahydrofolate reductase [NAD(P)H] 0.87 RALBFv3_RS02620 3-isopropylmalate dehydratase large subunit 0.63 24
Ralstonia solanacearum UW163 0.79 UW163_RS03705 methylenetetrahydrofolate reductase [NAD(P)H] 0.87 UW163_RS11105 3-isopropylmalate dehydratase large subunit
Ralstonia solanacearum PSI07 0.79 RPSI07_RS23495 methylenetetrahydrofolate reductase [NAD(P)H] 0.87 RPSI07_RS14695 3-isopropylmalate dehydratase large subunit 0.79 2
Ralstonia sp. UNC404CL21Col 0.79 ABZR87_RS04865 methylenetetrahydrofolate reductase [NAD(P)H] 0.87 ABZR87_RS14540 3-isopropylmalate dehydratase large subunit 0.78 6
Herbaspirillum seropedicae SmR1 0.71 HSERO_RS21425 5,10-methylenetetrahydrofolate reductase 0.80 HSERO_RS16515 isopropylmalate isomerase low > 78
Hydrogenophaga sp. GW460-11-11-14-LB1 0.65 GFF1692 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) 0.75 GFF3363 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)
Dechlorosoma suillum PS 0.64 Dsui_0640 5,10-methylenetetrahydrofolate reductase 0.70 Dsui_3201 3-isopropylmalate dehydratase, large subunit
Variovorax sp. SCN45 0.63 GFF2055 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) 0.75 GFF3890 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) low > 127
Acidovorax sp. GW101-3H11 0.63 Ac3H11_3045 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) 0.74 Ac3H11_1525 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) 0.90 8
Marinobacter adhaerens HP15 0.62 HP15_2917 5,10-methylenetetrahydrofolate reductase-like protein 0.73 HP15_1834 protein containing 3-isopropylmalate dehydratase, large subunit region domain 0.95 5
Variovorax sp. OAS795 0.62 ABID97_RS25015 methylenetetrahydrofolate reductase [NAD(P)H] 0.75 ABID97_RS08465 3-isopropylmalate dehydratase large subunit
Pseudomonas sp. RS175 0.60 PFR28_04202 5,10-methylenetetrahydrofolate reductase 0.73 PFR28_02824 3-isopropylmalate dehydratase large subunit 0.72 9
Pseudomonas fluorescens FW300-N2E2 0.60 Pf6N2E2_4638 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) 0.72 Pf6N2E2_63 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) 0.56 39
Pseudomonas fluorescens FW300-N2C3 0.60 AO356_13605 5,10-methylenetetrahydrofolate reductase 0.73 AO356_21400 isopropylmalate isomerase 0.94 12
Pseudomonas sp. S08-1 0.60 OH686_10820 methylenetetrahydrofolate reductase [NAD(P)H] 0.71 OH686_04480 3-isopropylmalate dehydratase large subunit 0.73 24
Pseudomonas fluorescens SBW25-INTG 0.59 PFLU_RS28165 methylenetetrahydrofolate reductase [NAD(P)H] 0.71 PFLU_RS20580 3-isopropylmalate dehydratase large subunit 0.79 4
Pseudomonas fluorescens SBW25 0.59 PFLU_RS28165 methylenetetrahydrofolate reductase [NAD(P)H] 0.71 PFLU_RS20580 3-isopropylmalate dehydratase large subunit 0.73 8
Rhodanobacter denitrificans FW104-10B01 0.59 LRK54_RS12030 methylenetetrahydrofolate reductase [NAD(P)H] 0.60 LRK54_RS07375 3-isopropylmalate dehydratase large subunit low > 59
Pseudomonas fluorescens FW300-N2E3 0.59 AO353_08015 5,10-methylenetetrahydrofolate reductase 0.72 AO353_20620 isopropylmalate isomerase 0.87 6
Rhodanobacter denitrificans MT42 0.59 LRK55_RS11765 methylenetetrahydrofolate reductase [NAD(P)H] 0.60 LRK55_RS07105 3-isopropylmalate dehydratase large subunit low > 63
Pseudomonas simiae WCS417 0.59 PS417_26510 5,10-methylenetetrahydrofolate reductase 0.72 PS417_18600 isopropylmalate isomerase 0.45 12
Pseudomonas fluorescens FW300-N1B4 0.59 Pf1N1B4_2384 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) 0.72 Pf1N1B4_15 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) 0.84 20
Pseudomonas putida KT2440 0.59 PP_4977 5,10-methylenetetrahydrofolate reductase 0.72 PP_1985 3-isopropylmalate dehydratase large subunit 0.45 49
Castellaniella sp019104865 MT123 0.58 ABCV34_RS13550 methylenetetrahydrofolate reductase [NAD(P)H] 0.77 ABCV34_RS04290 3-isopropylmalate dehydratase large subunit low > 48
Rhodanobacter sp. FW510-T8 0.58 OKGIIK_11830 metF methylenetetrahydrofolate reductase [NAD(P)H] 0.47 OKGIIK_13585 leuC 3-isopropylmalate dehydratase large subunit low > 52
Pseudomonas fluorescens GW456-L13 0.58 PfGW456L13_1050 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) 0.72 PfGW456L13_3948 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) 0.93 6
Lysobacter sp. OAE881 0.58 ABIE51_RS16490 methylenetetrahydrofolate reductase [NAD(P)H] 0.48 ABIE51_RS17575 3-isopropylmalate dehydratase large subunit 0.94 42
Pseudomonas stutzeri RCH2 0.58 Psest_0313 5,10-methylenetetrahydrofolate reductase, prokaryotic form 0.72 Psest_2591 3-isopropylmalate dehydratase, large subunit 0.89 13
Dyella japonica UNC79MFTsu3.2 0.58 ABZR86_RS11570 methylenetetrahydrofolate reductase [NAD(P)H] 0.49 ABZR86_RS15960 3-isopropylmalate dehydratase large subunit 0.97 5
Pseudomonas syringae pv. syringae B728a ΔmexB 0.57 Psyr_0459 5,10-methylenetetrahydrofolate reductase 0.72 Psyr_1983 3-isopropylmalate dehydratase, large subunit low > 86
Pseudomonas syringae pv. syringae B728a 0.57 Psyr_0459 5,10-methylenetetrahydrofolate reductase 0.72 Psyr_1983 3-isopropylmalate dehydratase, large subunit 0.67 10
Xanthomonas campestris pv. campestris strain 8004 0.57 Xcc-8004.4336.1 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) 0.72 Xcc-8004.1049.1 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) low > 74
Acinetobacter radioresistens SK82 0.50 MPMX26_01002 5,10-methylenetetrahydrofolate reductase 0.68 MPMX26_00345 3-isopropylmalate dehydratase large subunit low > 36
Serratia liquefaciens MT49 0.43 IAI46_24530 methylenetetrahydrofolate reductase 0.59 IAI46_03345 3-isopropylmalate dehydratase large subunit 0.84 6
Rahnella sp. WP5 0.43 EX31_RS14205 methylenetetrahydrofolate reductase 0.62 EX31_RS03690 3-isopropylmalate dehydratase large subunit 0.92 16
Enterobacter sp. TBS_079 0.42 MPMX20_04529 5,10-methylenetetrahydrofolate reductase 0.61 MPMX20_00767 3-isopropylmalate dehydratase large subunit 1 0.73 20
Dickeya dadantii 3937 0.42 DDA3937_RS00960 methylenetetrahydrofolate reductase 0.61 DDA3937_RS18125 3-isopropylmalate dehydratase large subunit low > 74
Dickeya dianthicola 67-19 0.42 HGI48_RS20415 methylenetetrahydrofolate reductase 0.62 HGI48_RS18065 3-isopropylmalate dehydratase large subunit low > 71
Dickeya dianthicola ME23 0.42 DZA65_RS21460 methylenetetrahydrofolate reductase 0.62 DZA65_RS19210 3-isopropylmalate dehydratase large subunit 0.74 14
Pectobacterium carotovorum WPP14 0.42 HER17_RS00950 methylenetetrahydrofolate reductase 0.61 HER17_RS03075 3-isopropylmalate dehydratase large subunit low > 75
Enterobacter asburiae PDN3 0.42 EX28DRAFT_4413 5,10-methylenetetrahydrofolate reductase, prokaryotic form 0.62 EX28DRAFT_3668 3-isopropylmalate dehydratase, large subunit 0.54 54
Klebsiella michiganensis M5al 0.42 BWI76_RS00805 5,10-methylenetetrahydrofolate reductase 0.61 BWI76_RS04670 3-isopropylmalate dehydratase large subunit 0.91 8
Pantoea sp. MT58 0.42 IAI47_00890 methylenetetrahydrofolate reductase 0.62 IAI47_16010 3-isopropylmalate dehydratase large subunit low > 76
Escherichia coli ECRC98 0.42 JDDGAC_17290 metF methylenetetrahydrofolate reductase 0.61 JDDGAC_14320 leuC1 3-isopropylmalate dehydratase large subunit 1 0.98 10
Escherichia coli HS(pFamp)R (ATCC 700891) 0.42 OHPLBJKB_04109 5,10-methylenetetrahydrofolate reductase 0.62 OHPLBJKB_03585 3-isopropylmalate dehydratase large subunit low > 73
Escherichia coli ECOR38 0.42 HEPCGN_12310 metF methylenetetrahydrofolate reductase 0.62 HEPCGN_08705 leuC1 3-isopropylmalate dehydratase large subunit 1 0.96 14
Escherichia coli BW25113 0.42 b3941 metF 5,10-methylenetetrahydrofolate reductase (NCBI) 0.62 b0072 leuC isopropylmalate isomerase large subunit (NCBI) 0.96 7
Escherichia coli ECRC101 0.42 MCAODC_04165 metF methylenetetrahydrofolate reductase 0.61 MCAODC_01240 leuC1 3-isopropylmalate dehydratase large subunit 1 0.98 6
Escherichia coli ECRC102 0.42 NIAGMN_11420 metF methylenetetrahydrofolate reductase 0.61 NIAGMN_08575 leuC1 3-isopropylmalate dehydratase large subunit 1
Escherichia coli ECRC99 0.42 KEDOAH_14495 metF methylenetetrahydrofolate reductase 0.61 KEDOAH_17430 leuC1 3-isopropylmalate dehydratase large subunit 1
Escherichia coli ECOR27 0.42 NOLOHH_05810 metF methylenetetrahydrofolate reductase 0.62 NOLOHH_03070 leuC1 3-isopropylmalate dehydratase large subunit 1 0.98 3
Escherichia coli ECRC62 0.42 BNILDI_05725 metF methylenetetrahydrofolate reductase 0.62 BNILDI_08540 leuC1 3-isopropylmalate dehydratase large subunit 1 0.99 3
Escherichia coli ECRC100 0.42 OKFHMN_13665 metF methylenetetrahydrofolate reductase 0.61 OKFHMN_10725 leuC1 3-isopropylmalate dehydratase large subunit 1 0.99 2
Escherichia coli BL21 0.42 ECD_03827 5,10-methylenetetrahydrofolate reductase 0.62 ECD_00074 3-isopropylmalate dehydratase large subunit 0.96 5
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.41 GFF2329 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) 0.62 GFF166 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) low > 78
Escherichia fergusonii Becca 0.41 EFB2_04672 5,10-methylenetetrahydrofolate reductase 0.62 EFB2_03973 3-isopropylmalate dehydratase large subunit low > 86
Escherichia coli Nissle 1917 0.41 ECOLIN_RS22760 methylenetetrahydrofolate reductase 0.62 ECOLIN_RS00390 3-isopropylmalate dehydratase large subunit 0.96 9
Erwinia tracheiphila SCR3 0.41 LU632_RS19630 metF methylenetetrahydrofolate reductase 0.58 LU632_RS02870 leuC 3-isopropylmalate dehydratase large subunit low > 74
Azospirillum brasilense Sp245 0.40 AZOBR_RS09540 5 10-methylenetetrahydrofolate reductase 0.68 AZOBR_RS03545 isopropylmalate isomerase 0.72 14
Magnetospirillum magneticum AMB-1 0.40 AMB_RS02230 methylenetetrahydrofolate reductase 0.64 AMB_RS20560 3-isopropylmalate dehydratase large subunit
Rhodospirillum rubrum S1H 0.39 Rru_A1530 5,10-methylenetetrahydrofolate reductase (NCBI) 0.69 Rru_A1189 3-isopropylmalate dehydratase large subunit region (NCBI) 0.95 8
Azospirillum sp. SherDot2 0.39 MPMX19_00635 5,10-methylenetetrahydrofolate reductase 0.68 MPMX19_01998 3-isopropylmalate dehydratase large subunit 0.90 8
Sphingomonas koreensis DSMZ 15582 0.39 Ga0059261_0992 5,10-methylenetetrahydrofolate reductase, prokaryotic form 0.58 Ga0059261_4223 3-isopropylmalate dehydratase, large subunit 0.62 58
Bosea sp. OAE506 0.38 ABIE41_RS12475 methylenetetrahydrofolate reductase [NAD(P)H] 0.66 ABIE41_RS11660 3-isopropylmalate dehydratase large subunit
Vibrio cholerae E7946 ATCC 55056 0.38 CSW01_13560 methylenetetrahydrofolate reductase 0.59 CSW01_12605 3-isopropylmalate dehydratase large subunit low > 62
Shewanella loihica PV-4 0.38 Shew_0522 metF 5,10-methylenetetrahydrofolate reductase (RefSeq) 0.59 Shew_3470 isopropylmalate isomerase large subunit (RefSeq) 0.99 4
Shewanella amazonensis SB2B 0.38 Sama_3169 metF 5,10-methylenetetrahydrofolate reductase (RefSeq) 0.58 Sama_0337 isopropylmalate isomerase large subunit (RefSeq) 0.98 8
Alteromonas macleodii MIT1002 0.37 MIT1002_03670 5,10-methylenetetrahydrofolate reductase 0.57 MIT1002_00947 3-isopropylmalate dehydratase large subunit low > 70
Shewanella sp. ANA-3 0.37 Shewana3_3612 metF 5,10-methylenetetrahydrofolate reductase (RefSeq) 0.59 Shewana3_3759 isopropylmalate isomerase large subunit (RefSeq) 0.97 8
Shewanella oneidensis MR-1 0.36 SO4054 metF 5,10-methylenetetrahydrofolate reductase (NCBI ptt file) 0.59 SO4234 leuC 3-isopropylmalate dehydratase, large subunit (NCBI ptt file) 0.97 12
Kangiella aquimarina DSM 16071 0.36 B158DRAFT_2461 5,10-methylenetetrahydrofolate reductase (NAD(P)) (EC 1.5.1.20) 0.73 B158DRAFT_1319 3-isopropylmalate dehydratase, large subunit low > 40
Caulobacter crescentus NA1000 Δfur 0.36 CCNA_02224 methylenetetrahydrofolate reductase 0.62 CCNA_00196 3-isopropylmalate dehydratase large subunit low > 67
Caulobacter crescentus NA1000 0.36 CCNA_02224 methylenetetrahydrofolate reductase 0.62 CCNA_00196 3-isopropylmalate dehydratase large subunit 0.96 10
Rhizobium sp. OAE497 0.35 ABIE40_RS11950 methylenetetrahydrofolate reductase [NAD(P)H] 0.65 ABIE40_RS18380 3-isopropylmalate dehydratase large subunit 0.98 2
Agrobacterium fabrum C58 0.35 Atu2123 methylenetetrahydrofolate reductase 0.65 Atu2709 3-isopropylmalate dehydratase, large subunit 0.60 7
Phaeobacter inhibens DSM 17395 0.35 PGA1_c11700 5,10-methylenetetrahydrofolate reductase MetF 0.59 PGA1_c29780 3-isopropylmalate dehydratase large subunit 0.91 8
Brevundimonas sp. GW460-12-10-14-LB2 0.35 A4249_RS07925 methylenetetrahydrofolate reductase [NAD(P)H] 0.46 A4249_RS10005 3-isopropylmalate dehydratase large subunit 0.99 10
Sinorhizobium meliloti 1021 0.34 SMc01843 5,10-methylenetetrahydrofolate reductase 0.66 SMc03823 isopropylmalate isomerase large subunit 0.98 5
Rhodopseudomonas palustris CGA009 0.34 TX73_019175 methylenetetrahydrofolate reductase [NAD(P)H] 0.64 TX73_001245 3-isopropylmalate dehydratase large subunit
Dinoroseobacter shibae DFL-12 0.30 Dshi_2080 5,10-methylenetetrahydrofolate reductase (RefSeq) 0.58 Dshi_0085 3-isopropylmalate dehydratase, large subunit (RefSeq)
Bifidobacterium breve UCC2003 0.27 BBR_RS15410 methylenetetrahydrofolate reductase [NAD(P)H] 0.54 BBR_RS19630 3-isopropylmalate dehydratase large subunit 0.29 7
Phocaeicola dorei CL03T12C01 0.25 ABI39_RS15570 methylenetetrahydrofolate reductase [NAD(P)H] 0.50 ABI39_RS10200 3-isopropylmalate dehydratase large subunit low > 72
Phocaeicola vulgatus CL09T03C04 0.24 HMPREF1058_RS01490 methylenetetrahydrofolate reductase [NAD(P)H] 0.49 HMPREF1058_RS14550 3-isopropylmalate dehydratase large subunit low > 67
Echinicola vietnamensis KMM 6221, DSM 17526 0.24 Echvi_3637 5,10-methylenetetrahydrofolate reductase, prokaryotic form 0.49 Echvi_2059 3-isopropylmalate dehydratase, large subunit 0.76 45
Pedobacter sp. GW460-11-11-14-LB5 0.22 CA265_RS23445 methylenetetrahydrofolate reductase [NAD(P)H] 0.51 CA265_RS15830 3-isopropylmalate dehydratase large subunit 0.95 20
Pontibacter actiniarum KMM 6156, DSM 19842 0.21 CA264_16780 methylenetetrahydrofolate reductase [NAD(P)H] 0.51 CA264_09435 3-isopropylmalate dehydratase large subunit low > 74
Bacteroides thetaiotaomicron VPI-5482 0.21 BT3821 5,10-methylenetetrahydrofolate reductase (NCBI ptt file) 0.50 BT1860 3-isopropylmalate dehydratase large subunit (NCBI ptt file) low > 81
Bacteroides stercoris CC31F 0.20 HMPREF1181_RS00120 methylenetetrahydrofolate reductase [NAD(P)H] 0.50 HMPREF1181_RS14145 3-isopropylmalate dehydratase large subunit low > 56
Mucilaginibacter yixingensis YX-36 DSM 26809 0.20 ABZR88_RS20935 methylenetetrahydrofolate reductase [NAD(P)H] 0.52 ABZR88_RS11595 3-isopropylmalate dehydratase large subunit
Parabacteroides merdae CL09T00C40 0.20 HMPREF1078_RS07860 methylenetetrahydrofolate reductase [NAD(P)H] 0.49 HMPREF1078_RS16660 3-isopropylmalate dehydratase large subunit low > 61
Bacteroides ovatus ATCC 8483 0.17 BACOVA_03666 methylenetetrahydrofolate reductase (NAD(P)H) 0.50 BACOVA_04603 3-isopropylmalate dehydratase, large subunit low > 94

Not shown: 3 genomes with orthologs for BPHYT_RS18705 only; 2 genomes with orthologs for BPHYT_RS33915 only