Conservation of cofitness between BPHYT_RS33915 and BPHYT_RS33900 in Burkholderia phytofirmans PsJN

96 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Burkholderia phytofirmans PsJN 1.0 BPHYT_RS33915 isopropylmalate isomerase 1.0 BPHYT_RS33900 3-isopropylmalate dehydrogenase 0.97 1
Paraburkholderia bryophila 376MFSha3.1 0.97 H281DRAFT_06075 3-isopropylmalate dehydratase, large subunit 0.98 H281DRAFT_06072 3-isopropylmalate dehydrogenase 0.88 1
Paraburkholderia graminis OAS925 0.96 ABIE53_004801 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit 0.98 ABIE53_004804 3-isopropylmalate dehydrogenase 0.97 1
Paraburkholderia sabiae LMG 24235 0.95 QEN71_RS17605 3-isopropylmalate dehydratase large subunit 0.96 QEN71_RS17620 3-isopropylmalate dehydrogenase 0.93 2
Ralstonia solanacearum PSI07 0.87 RPSI07_RS14695 3-isopropylmalate dehydratase large subunit 0.89 RPSI07_RS14705 3-isopropylmalate dehydrogenase 0.80 5
Ralstonia sp. UNC404CL21Col 0.87 ABZR87_RS14540 3-isopropylmalate dehydratase large subunit 0.89 ABZR87_RS14530 3-isopropylmalate dehydrogenase 0.93 1
Ralstonia solanacearum UW163 0.87 UW163_RS11105 3-isopropylmalate dehydratase large subunit 0.89 UW163_RS11115 3-isopropylmalate dehydrogenase
Ralstonia solanacearum IBSBF1503 0.87 RALBFv3_RS02620 3-isopropylmalate dehydratase large subunit 0.89 RALBFv3_RS02610 3-isopropylmalate dehydrogenase 0.66 7
Ralstonia solanacearum GMI1000 0.87 RS_RS10000 3-isopropylmalate dehydratase large subunit 0.89 RS_RS09990 3-isopropylmalate dehydrogenase 0.42 16
Cupriavidus basilensis FW507-4G11 0.86 RR42_RS14400 isopropylmalate isomerase 0.89 RR42_RS14385 3-isopropylmalate dehydrogenase 0.96 1
Herbaspirillum seropedicae SmR1 0.80 HSERO_RS16515 isopropylmalate isomerase 0.86 HSERO_RS16500 3-isopropylmalate dehydrogenase 0.96 4
Castellaniella sp019104865 MT123 0.77 ABCV34_RS04290 3-isopropylmalate dehydratase large subunit 0.75 ABCV34_RS04280 3-isopropylmalate dehydrogenase 0.74 1
Variovorax sp. OAS795 0.75 ABID97_RS08465 3-isopropylmalate dehydratase large subunit 0.79 ABID97_RS08455 3-isopropylmalate dehydrogenase
Variovorax sp. SCN45 0.75 GFF3890 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) 0.79 GFF3888 3-isopropylmalate dehydrogenase (EC 1.1.1.85) 0.71 16
Hydrogenophaga sp. GW460-11-11-14-LB1 0.75 GFF3363 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) 0.77 GFF3360 3-isopropylmalate dehydrogenase (EC 1.1.1.85) 0.97 1
Acidovorax sp. GW101-3H11 0.74 Ac3H11_1525 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) 0.79 Ac3H11_1528 3-isopropylmalate dehydrogenase (EC 1.1.1.85) 0.98 1
Marinobacter adhaerens HP15 0.73 HP15_1834 protein containing 3-isopropylmalate dehydratase, large subunit region domain 0.64 HP15_1832 3-isopropylmalate dehydrogenase 0.97 1
Kangiella aquimarina DSM 16071 0.73 B158DRAFT_1319 3-isopropylmalate dehydratase, large subunit 0.63 B158DRAFT_1322 3-isopropylmalate dehydrogenase (EC 1.1.1.85) 0.97 1
Pseudomonas sp. RS175 0.73 PFR28_02824 3-isopropylmalate dehydratase large subunit 0.64 PFR28_02821 3-isopropylmalate dehydrogenase 0.89 1
Pseudomonas fluorescens FW300-N2C3 0.73 AO356_21400 isopropylmalate isomerase 0.64 AO356_21415 3-isopropylmalate dehydrogenase 0.97 1
Pseudomonas fluorescens FW300-N2E3 0.72 AO353_20620 isopropylmalate isomerase 0.65 AO353_20635 3-isopropylmalate dehydrogenase 0.98 1
Pseudomonas fluorescens FW300-N2E2 0.72 Pf6N2E2_63 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) 0.64 Pf6N2E2_66 3-isopropylmalate dehydrogenase (EC 1.1.1.85) 0.89 1
Xanthomonas campestris pv. campestris strain 8004 0.72 Xcc-8004.1049.1 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) 0.60 Xcc-8004.1053.1 3-isopropylmalate dehydrogenase (EC 1.1.1.85) 0.97 3
Pseudomonas fluorescens GW456-L13 0.72 PfGW456L13_3948 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) 0.64 PfGW456L13_3945 3-isopropylmalate dehydrogenase (EC 1.1.1.85) 0.99 1
Pseudomonas stutzeri RCH2 0.72 Psest_2591 3-isopropylmalate dehydratase, large subunit 0.63 Psest_2589 3-isopropylmalate dehydrogenase 0.95 1
Pseudomonas syringae pv. syringae B728a 0.72 Psyr_1983 3-isopropylmalate dehydratase, large subunit 0.63 Psyr_1985 3-isopropylmalate dehydrogenase 0.97 1
Pseudomonas syringae pv. syringae B728a ΔmexB 0.72 Psyr_1983 3-isopropylmalate dehydratase, large subunit 0.63 Psyr_1985 3-isopropylmalate dehydrogenase 0.96 1
Pseudomonas fluorescens FW300-N1B4 0.72 Pf1N1B4_15 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) 0.65 Pf1N1B4_12 3-isopropylmalate dehydrogenase (EC 1.1.1.85) 0.93 2
Pseudomonas simiae WCS417 0.72 PS417_18600 isopropylmalate isomerase 0.64 PS417_18585 3-isopropylmalate dehydrogenase 0.94 1
Pseudomonas putida KT2440 0.72 PP_1985 3-isopropylmalate dehydratase large subunit 0.64 PP_1988 3-isopropylmalate dehydrogenase 0.94 1
Pseudomonas fluorescens SBW25 0.71 PFLU_RS20580 3-isopropylmalate dehydratase large subunit 0.63 PFLU_RS20565 3-isopropylmalate dehydrogenase 0.92 1
Pseudomonas fluorescens SBW25-INTG 0.71 PFLU_RS20580 3-isopropylmalate dehydratase large subunit 0.63 PFLU_RS20565 3-isopropylmalate dehydrogenase 0.97 1
Pseudomonas sp. S08-1 0.71 OH686_04480 3-isopropylmalate dehydratase large subunit 0.62 OH686_04470 3-isopropylmalate dehydrogenase 0.89 7
Dechlorosoma suillum PS 0.70 Dsui_3201 3-isopropylmalate dehydratase, large subunit 0.68 Dsui_3198 3-isopropylmalate dehydrogenase
Rhodospirillum rubrum S1H 0.69 Rru_A1189 3-isopropylmalate dehydratase large subunit region (NCBI) 0.51 Rru_A1191 3-isopropylmalate dehydrogenase (NCBI) 0.95 8
Acinetobacter radioresistens SK82 0.68 MPMX26_00345 3-isopropylmalate dehydratase large subunit 0.59 MPMX26_00348 3-isopropylmalate dehydrogenase 1.00 1
Azospirillum sp. SherDot2 0.68 MPMX19_01998 3-isopropylmalate dehydratase large subunit 0.51 MPMX19_00607 3-isopropylmalate dehydrogenase 0.93 1
Azospirillum brasilense Sp245 0.68 AZOBR_RS03545 isopropylmalate isomerase 0.49 AZOBR_RS14130 3-isopropylmalate dehydrogenase 0.89 12
Sinorhizobium meliloti 1021 0.66 SMc03823 isopropylmalate isomerase large subunit 0.50 SMc04405 3-isopropylmalate dehydrogenase 0.99 2
Bosea sp. OAE506 0.66 ABIE41_RS11660 3-isopropylmalate dehydratase large subunit 0.51 ABIE41_RS11860 3-isopropylmalate dehydrogenase
Rhizobium sp. OAE497 0.65 ABIE40_RS18380 3-isopropylmalate dehydratase large subunit 0.52 ABIE40_RS19050 3-isopropylmalate dehydrogenase 0.99 3
Agrobacterium fabrum C58 0.65 Atu2709 3-isopropylmalate dehydratase, large subunit 0.49 Atu2791 3-isopropylmalate dehydrogenase 0.99 2
Rhodopseudomonas palustris CGA009 0.64 TX73_001245 3-isopropylmalate dehydratase large subunit 0.48 TX73_001175 3-isopropylmalate dehydrogenase
Magnetospirillum magneticum AMB-1 0.64 AMB_RS20560 3-isopropylmalate dehydratase large subunit 0.52 AMB_RS20570 3-isopropylmalate dehydrogenase
Pantoea sp. MT58 0.62 IAI47_16010 3-isopropylmalate dehydratase large subunit 0.47 IAI47_16005 3-isopropylmalate dehydrogenase 0.98 4
Escherichia fergusonii Becca 0.62 EFB2_03973 3-isopropylmalate dehydratase large subunit 0.49 EFB2_03972 3-isopropylmalate dehydrogenase low > 86
Enterobacter asburiae PDN3 0.62 EX28DRAFT_3668 3-isopropylmalate dehydratase, large subunit 0.49 EX28DRAFT_3669 3-isopropylmalate dehydrogenase 0.97 1
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.62 GFF166 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) 0.50 GFF165 3-isopropylmalate dehydrogenase (EC 1.1.1.85) low > 78
Escherichia coli ECOR27 0.62 NOLOHH_03070 leuC1 3-isopropylmalate dehydratase large subunit 1 0.49 NOLOHH_03065 leuA 2-isopropylmalate synthase 0.97 9
Escherichia coli Nissle 1917 0.62 ECOLIN_RS00390 3-isopropylmalate dehydratase large subunit 0.49 ECOLIN_RS00395 3-isopropylmalate dehydrogenase 0.95 8
Escherichia coli ECRC62 0.62 BNILDI_08540 leuC1 3-isopropylmalate dehydratase large subunit 1 0.49 BNILDI_08545 leuA 2-isopropylmalate synthase 0.99 8
Escherichia coli BW25113 0.62 b0072 leuC isopropylmalate isomerase large subunit (NCBI) 0.49 b0073 leuB 3-isopropylmalate dehydrogenase (VIMSS) 0.99 1
Escherichia coli ECOR38 0.62 HEPCGN_08705 leuC1 3-isopropylmalate dehydratase large subunit 1 0.49 HEPCGN_08700 leuB 3-isopropylmalate dehydrogenase 0.98 15
Escherichia coli BL21 0.62 ECD_00074 3-isopropylmalate dehydratase large subunit 0.49 ECD_00075 3-isopropylmalate dehydrogenase, NAD(+)-dependent 0.98 2
Rahnella sp. WP5 0.62 EX31_RS03690 3-isopropylmalate dehydratase large subunit 0.50 EX31_RS03685 3-isopropylmalate dehydrogenase 0.99 1
Caulobacter crescentus NA1000 0.62 CCNA_00196 3-isopropylmalate dehydratase large subunit 0.48 CCNA_00193 3-isopropylmalate dehydrogenase 1.00 1
Caulobacter crescentus NA1000 Δfur 0.62 CCNA_00196 3-isopropylmalate dehydratase large subunit 0.48 CCNA_00193 3-isopropylmalate dehydrogenase low > 67
Escherichia coli HS(pFamp)R (ATCC 700891) 0.62 OHPLBJKB_03585 3-isopropylmalate dehydratase large subunit 0.49 OHPLBJKB_03584 3-isopropylmalate dehydrogenase low > 73
Dickeya dianthicola ME23 0.62 DZA65_RS19210 3-isopropylmalate dehydratase large subunit 0.50 DZA65_RS19205 3-isopropylmalate dehydrogenase 0.98 1
Dickeya dianthicola 67-19 0.62 HGI48_RS18065 3-isopropylmalate dehydratase large subunit 0.49 HGI48_RS18060 3-isopropylmalate dehydrogenase 0.89 2
Escherichia coli ECRC101 0.61 MCAODC_01240 leuC1 3-isopropylmalate dehydratase large subunit 1 0.49 MCAODC_01235 leuB 3-isopropylmalate dehydrogenase 0.98 3
Escherichia coli ECRC102 0.61 NIAGMN_08575 leuC1 3-isopropylmalate dehydratase large subunit 1 0.49 NIAGMN_08570 leuB 3-isopropylmalate dehydrogenase
Escherichia coli ECRC98 0.61 JDDGAC_14320 leuC1 3-isopropylmalate dehydratase large subunit 1 0.49 JDDGAC_14315 leuB 3-isopropylmalate dehydrogenase 0.99 2
Escherichia coli ECRC100 0.61 OKFHMN_10725 leuC1 3-isopropylmalate dehydratase large subunit 1 0.49 OKFHMN_10720 leuB 3-isopropylmalate dehydrogenase 0.99 3
Escherichia coli ECRC99 0.61 KEDOAH_17430 leuC1 3-isopropylmalate dehydratase large subunit 1 0.49 KEDOAH_17435 leuB 3-isopropylmalate dehydrogenase
Enterobacter sp. TBS_079 0.61 MPMX20_00767 3-isopropylmalate dehydratase large subunit 1 0.49 MPMX20_00768 3-isopropylmalate dehydrogenase 0.98 1
Klebsiella michiganensis M5al 0.61 BWI76_RS04670 3-isopropylmalate dehydratase large subunit 0.50 BWI76_RS04675 3-isopropylmalate dehydrogenase 0.95 5
Dickeya dadantii 3937 0.61 DDA3937_RS18125 3-isopropylmalate dehydratase large subunit 0.49 DDA3937_RS18120 3-isopropylmalate dehydrogenase 0.97 1
Pectobacterium carotovorum WPP14 0.61 HER17_RS03075 3-isopropylmalate dehydratase large subunit 0.49 HER17_RS03080 3-isopropylmalate dehydrogenase 0.98 9
Rhodanobacter denitrificans FW104-10B01 0.60 LRK54_RS07375 3-isopropylmalate dehydratase large subunit 0.41 LRK54_RS10325 3-isopropylmalate dehydrogenase low > 59
Rhodanobacter denitrificans MT42 0.60 LRK55_RS07105 3-isopropylmalate dehydratase large subunit 0.41 LRK55_RS09965 3-isopropylmalate dehydrogenase low > 63
Serratia liquefaciens MT49 0.59 IAI46_03345 3-isopropylmalate dehydratase large subunit 0.51 IAI46_03350 3-isopropylmalate dehydrogenase 0.81 6
Vibrio cholerae E7946 ATCC 55056 0.59 CSW01_12605 3-isopropylmalate dehydratase large subunit 0.49 CSW01_12600 3-isopropylmalate dehydrogenase low > 62
Phaeobacter inhibens DSM 17395 0.59 PGA1_c29780 3-isopropylmalate dehydratase large subunit 0.54 PGA1_c29830 3-isopropylmalate dehydrogenase LeuB 0.98 1
Shewanella oneidensis MR-1 0.59 SO4234 leuC 3-isopropylmalate dehydratase, large subunit (NCBI ptt file) 0.48 SO4235 leuB 3-isopropylmalate dehydrogenase (NCBI ptt file) 0.99 1
Shewanella loihica PV-4 0.59 Shew_3470 isopropylmalate isomerase large subunit (RefSeq) 0.48 Shew_3471 3-isopropylmalate dehydrogenase (RefSeq) 0.99 1
Shewanella sp. ANA-3 0.59 Shewana3_3759 isopropylmalate isomerase large subunit (RefSeq) 0.48 Shewana3_3760 3-isopropylmalate dehydrogenase (RefSeq) 0.98 3
Erwinia tracheiphila SCR3 0.58 LU632_RS02870 leuC 3-isopropylmalate dehydratase large subunit 0.47 LU632_RS02875 leuB 3-isopropylmalate dehydrogenase 0.97 1
Shewanella amazonensis SB2B 0.58 Sama_0337 isopropylmalate isomerase large subunit (RefSeq) 0.47 Sama_0336 3-isopropylmalate dehydrogenase (RefSeq) 0.99 1
Dinoroseobacter shibae DFL-12 0.58 Dshi_0085 3-isopropylmalate dehydratase, large subunit (RefSeq) 0.52 Dshi_0081 3-isopropylmalate dehydrogenase (RefSeq)
Sphingomonas koreensis DSMZ 15582 0.58 Ga0059261_4223 3-isopropylmalate dehydratase, large subunit 0.60 Ga0059261_3190 3-isopropylmalate dehydrogenase 0.97 32
Alteromonas macleodii MIT1002 0.57 MIT1002_00947 3-isopropylmalate dehydratase large subunit 0.51 MIT1002_00948 3-isopropylmalate dehydrogenase 0.99 1
Mucilaginibacter yixingensis YX-36 DSM 26809 0.52 ABZR88_RS11595 3-isopropylmalate dehydratase large subunit 0.47 ABZR88_RS11605 3-isopropylmalate dehydrogenase
Pontibacter actiniarum KMM 6156, DSM 19842 0.51 CA264_09435 3-isopropylmalate dehydratase large subunit 0.43 CA264_09445 3-isopropylmalate dehydrogenase low > 74
Pedobacter sp. GW460-11-11-14-LB5 0.51 CA265_RS15830 3-isopropylmalate dehydratase large subunit 0.48 CA265_RS15850 3-isopropylmalate dehydrogenase 0.96 1
Bacteroides thetaiotaomicron VPI-5482 0.50 BT1860 3-isopropylmalate dehydratase large subunit (NCBI ptt file) 0.39 BT1857 3-isopropylmalate dehydrogenase (NCBI ptt file) 0.94 1
Bacteroides stercoris CC31F 0.50 HMPREF1181_RS14145 3-isopropylmalate dehydratase large subunit 0.39 HMPREF1181_RS14125 3-isopropylmalate dehydrogenase 0.98 1
Phocaeicola dorei CL03T12C01 0.50 ABI39_RS10200 3-isopropylmalate dehydratase large subunit 0.39 ABI39_RS10215 3-isopropylmalate dehydrogenase 0.93 2
Bacteroides ovatus ATCC 8483 0.50 BACOVA_04603 3-isopropylmalate dehydratase, large subunit 0.39 BACOVA_04600 3-isopropylmalate dehydrogenase 0.99 2
Phocaeicola vulgatus CL09T03C04 0.49 HMPREF1058_RS14550 3-isopropylmalate dehydratase large subunit 0.39 HMPREF1058_RS14565 3-isopropylmalate dehydrogenase 0.96 1
Echinicola vietnamensis KMM 6221, DSM 17526 0.49 Echvi_2059 3-isopropylmalate dehydratase, large subunit 0.44 Echvi_2062 3-isopropylmalate dehydrogenase
Parabacteroides merdae CL09T00C40 0.49 HMPREF1078_RS16660 3-isopropylmalate dehydratase large subunit 0.40 HMPREF1078_RS16640 3-isopropylmalate dehydrogenase 0.98 1
Dyella japonica UNC79MFTsu3.2 0.49 ABZR86_RS15960 3-isopropylmalate dehydratase large subunit 0.40 ABZR86_RS15950 3-isopropylmalate dehydrogenase 0.98 1
Lysobacter sp. OAE881 0.48 ABIE51_RS17575 3-isopropylmalate dehydratase large subunit 0.44 ABIE51_RS17585 3-isopropylmalate dehydrogenase 0.95 7
Synechococcus elongatus PCC 7942 0.47 Synpcc7942_1898 leuC isopropylmalate isomerase large subunit 0.56 Synpcc7942_1505 leuB 3-isopropylmalate dehydrogenase
Rhodanobacter sp. FW510-T8 0.47 OKGIIK_13585 leuC 3-isopropylmalate dehydratase large subunit 0.42 OKGIIK_13595 leuB 3-isopropylmalate dehydrogenase low > 52
Brevundimonas sp. GW460-12-10-14-LB2 0.46 A4249_RS10005 3-isopropylmalate dehydratase large subunit 0.42 A4249_RS09995 3-isopropylmalate dehydrogenase 0.99 10

Not shown: 2 genomes with orthologs for BPHYT_RS33915 only; 3 genomes with orthologs for BPHYT_RS33900 only