Conservation of cofitness between BPHYT_RS33900 and BPHYT_RS15920 in Burkholderia phytofirmans PsJN

89 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Burkholderia phytofirmans PsJN 1.0 BPHYT_RS33900 3-isopropylmalate dehydrogenase 1.0 BPHYT_RS15920 argininosuccinate synthase 0.93 12
Paraburkholderia graminis OAS925 0.98 ABIE53_004804 3-isopropylmalate dehydrogenase 1.00 ABIE53_003355 argininosuccinate synthase — —
Paraburkholderia bryophila 376MFSha3.1 0.98 H281DRAFT_06072 3-isopropylmalate dehydrogenase 0.99 H281DRAFT_04120 argininosuccinate synthase 0.67 14
Paraburkholderia sabiae LMG 24235 0.96 QEN71_RS17620 3-isopropylmalate dehydrogenase 0.16 QEN71_RS09235 argininosuccinate synthase 0.80 12
Ralstonia sp. UNC404CL21Col 0.89 ABZR87_RS14530 3-isopropylmalate dehydrogenase 0.15 ABZR87_RS00835 argininosuccinate synthase 0.74 38
Cupriavidus basilensis FW507-4G11 0.89 RR42_RS14385 3-isopropylmalate dehydrogenase 0.91 RR42_RS17170 argininosuccinate synthase — —
Ralstonia solanacearum PSI07 0.89 RPSI07_RS14705 3-isopropylmalate dehydrogenase 0.15 RPSI07_RS12120 argininosuccinate synthase — —
Ralstonia solanacearum UW163 0.89 UW163_RS11115 3-isopropylmalate dehydrogenase 0.15 UW163_RS08445 argininosuccinate synthase — —
Ralstonia solanacearum GMI1000 0.89 RS_RS09990 3-isopropylmalate dehydrogenase 0.15 RS_RS12800 argininosuccinate synthase — —
Ralstonia solanacearum IBSBF1503 0.89 RALBFv3_RS02610 3-isopropylmalate dehydrogenase 0.15 RALBFv3_RS05180 argininosuccinate synthase — —
Herbaspirillum seropedicae SmR1 0.86 HSERO_RS16500 3-isopropylmalate dehydrogenase 0.16 HSERO_RS07180 argininosuccinate synthase — —
Variovorax sp. SCN45 0.79 GFF3888 3-isopropylmalate dehydrogenase (EC 1.1.1.85) 0.15 GFF3096 Argininosuccinate synthase (EC 6.3.4.5) — —
Acidovorax sp. GW101-3H11 0.79 Ac3H11_1528 3-isopropylmalate dehydrogenase (EC 1.1.1.85) 0.14 Ac3H11_2616 Argininosuccinate synthase (EC 6.3.4.5) — —
Variovorax sp. OAS795 0.79 ABID97_RS08455 3-isopropylmalate dehydrogenase 0.15 ABID97_RS21670 argininosuccinate synthase — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.77 GFF3360 3-isopropylmalate dehydrogenase (EC 1.1.1.85) 0.14 GFF294 Argininosuccinate synthase (EC 6.3.4.5) — —
Dechlorosoma suillum PS 0.68 Dsui_3198 3-isopropylmalate dehydrogenase 0.84 Dsui_3248 argininosuccinate synthase — —
Pseudomonas fluorescens FW300-N2E3 0.65 AO353_20635 3-isopropylmalate dehydrogenase 0.74 AO353_04105 argininosuccinate synthase 0.89 20
Pseudomonas fluorescens FW300-N1B4 0.65 Pf1N1B4_12 3-isopropylmalate dehydrogenase (EC 1.1.1.85) 0.75 Pf1N1B4_742 Argininosuccinate synthase (EC 6.3.4.5) 0.82 27
Pseudomonas putida KT2440 0.64 PP_1988 3-isopropylmalate dehydrogenase 0.76 PP_1088 Argininosuccinate synthase 0.86 22
Pseudomonas fluorescens FW300-N2C3 0.64 AO356_21415 3-isopropylmalate dehydrogenase 0.75 AO356_18325 argininosuccinate synthase 0.92 17
Pseudomonas fluorescens FW300-N2E2 0.64 Pf6N2E2_66 3-isopropylmalate dehydrogenase (EC 1.1.1.85) 0.75 Pf6N2E2_5590 Argininosuccinate synthase (EC 6.3.4.5) — —
Pseudomonas fluorescens GW456-L13 0.64 PfGW456L13_3945 3-isopropylmalate dehydrogenase (EC 1.1.1.85) 0.74 PfGW456L13_1749 Argininosuccinate synthase (EC 6.3.4.5) 0.85 42
Pseudomonas sp. RS175 0.64 PFR28_02821 3-isopropylmalate dehydrogenase 0.75 PFR28_03353 Argininosuccinate synthase — —
Marinobacter adhaerens HP15 0.64 HP15_1832 3-isopropylmalate dehydrogenase 0.74 HP15_2367 argininosuccinate synthase — —
Pseudomonas simiae WCS417 0.64 PS417_18585 3-isopropylmalate dehydrogenase 0.75 PS417_05640 argininosuccinate synthase — —
Pseudomonas fluorescens SBW25-INTG 0.63 PFLU_RS20565 3-isopropylmalate dehydrogenase 0.74 PFLU_RS05725 argininosuccinate synthase — —
Pseudomonas fluorescens SBW25 0.63 PFLU_RS20565 3-isopropylmalate dehydrogenase 0.74 PFLU_RS05725 argininosuccinate synthase — —
Kangiella aquimarina DSM 16071 0.63 B158DRAFT_1322 3-isopropylmalate dehydrogenase (EC 1.1.1.85) 0.22 B158DRAFT_1976 argininosuccinate synthase (EC 6.3.4.5) low > 40
Pseudomonas syringae pv. syringae B728a 0.63 Psyr_1985 3-isopropylmalate dehydrogenase 0.74 Psyr_3892 argininosuccinate synthase — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.63 Psyr_1985 3-isopropylmalate dehydrogenase 0.74 Psyr_3892 argininosuccinate synthase — —
Pseudomonas stutzeri RCH2 0.63 Psest_2589 3-isopropylmalate dehydrogenase 0.76 Psest_3121 argininosuccinate synthase — —
Pseudomonas sp. S08-1 0.62 OH686_04470 3-isopropylmalate dehydrogenase 0.74 OH686_03930 argininosuccinate synthase 0.78 24
Sphingomonas koreensis DSMZ 15582 0.60 Ga0059261_3190 3-isopropylmalate dehydrogenase 0.64 Ga0059261_1393 argininosuccinate synthase (EC 6.3.4.5) 0.97 1
Xanthomonas campestris pv. campestris strain 8004 0.60 Xcc-8004.1053.1 3-isopropylmalate dehydrogenase (EC 1.1.1.85) 0.20 Xcc-8004.2318.1 Argininosuccinate synthase (EC 6.3.4.5) 0.81 30
Desulfovibrio vulgaris Miyazaki F 0.57 DvMF_1794 3-isopropylmalate dehydrogenase (RefSeq) 0.57 DvMF_0047 argininosuccinate synthase (RefSeq) 0.95 7
Synechococcus elongatus PCC 7942 0.56 Synpcc7942_1505 leuB 3-isopropylmalate dehydrogenase 0.41 Synpcc7942_0009 argG argininosuccinate synthase — —
Desulfovibrio vulgaris Hildenborough JW710 0.54 DVU2985 leuB 3-isopropylmalate dehydrogenase (TIGR) 0.59 DVU1095 argG argininosuccinate synthase (TIGR) 0.90 13
Phaeobacter inhibens DSM 17395 0.54 PGA1_c29830 3-isopropylmalate dehydrogenase LeuB 0.67 PGA1_c34920 argininosuccinate synthase ArgG — —
Dinoroseobacter shibae DFL-12 0.52 Dshi_0081 3-isopropylmalate dehydrogenase (RefSeq) 0.65 Dshi_3472 Argininosuccinate synthase (RefSeq) — —
Magnetospirillum magneticum AMB-1 0.52 AMB_RS20570 3-isopropylmalate dehydrogenase 0.68 AMB_RS05720 argininosuccinate synthase — —
Rhizobium sp. OAE497 0.52 ABIE40_RS19050 3-isopropylmalate dehydrogenase 0.64 ABIE40_RS18150 argininosuccinate synthase — —
Bosea sp. OAE506 0.51 ABIE41_RS11860 3-isopropylmalate dehydrogenase 0.64 ABIE41_RS00340 argininosuccinate synthase — —
Serratia liquefaciens MT49 0.51 IAI46_03350 3-isopropylmalate dehydrogenase 0.48 IAI46_24505 argininosuccinate synthase 0.69 13
Azospirillum sp. SherDot2 0.51 MPMX19_00607 3-isopropylmalate dehydrogenase 0.70 MPMX19_02369 Argininosuccinate synthase — —
Rhodospirillum rubrum S1H 0.51 Rru_A1191 3-isopropylmalate dehydrogenase (NCBI) 0.68 Rru_A3751 Argininosuccinate synthase (NCBI) 0.93 4
Alteromonas macleodii MIT1002 0.51 MIT1002_00948 3-isopropylmalate dehydrogenase 0.46 MIT1002_00468 Argininosuccinate synthase 0.96 32
Sinorhizobium meliloti 1021 0.50 SMc04405 3-isopropylmalate dehydrogenase 0.64 SMc03826 argininosuccinate synthase 0.77 72
Rahnella sp. WP5 0.50 EX31_RS03685 3-isopropylmalate dehydrogenase 0.15 EX31_RS13445 argininosuccinate synthase 0.99 2
Agrobacterium fabrum C58 0.49 Atu2791 3-isopropylmalate dehydrogenase 0.64 Atu2667 argininosuccinate synthase — —
Azospirillum brasilense Sp245 0.49 AZOBR_RS14130 3-isopropylmalate dehydrogenase 0.70 AZOBR_RS00785 argininosuccinate synthase — —
Escherichia coli ECOR38 0.49 HEPCGN_08700 leuB 3-isopropylmalate dehydrogenase 0.14 HEPCGN_16965 argG argininosuccinate synthase 0.97 11
Escherichia fergusonii Becca 0.49 EFB2_03972 3-isopropylmalate dehydrogenase 0.14 EFB2_00651 Argininosuccinate synthase low > 86
Escherichia coli Nissle 1917 0.49 ECOLIN_RS00395 3-isopropylmalate dehydrogenase 0.14 ECOLIN_RS18275 argininosuccinate synthase 0.95 10
Escherichia coli ECRC99 0.49 KEDOAH_17435 leuB 3-isopropylmalate dehydrogenase 0.14 KEDOAH_10060 argG argininosuccinate synthase — —
Escherichia coli ECRC102 0.49 NIAGMN_08570 leuB 3-isopropylmalate dehydrogenase 0.14 NIAGMN_15850 argG argininosuccinate synthase — —
Escherichia coli ECRC98 0.49 JDDGAC_14315 leuB 3-isopropylmalate dehydrogenase 0.14 JDDGAC_21715 argG argininosuccinate synthase 0.89 40
Escherichia coli ECRC101 0.49 MCAODC_01235 leuB 3-isopropylmalate dehydrogenase 0.14 MCAODC_08610 argG argininosuccinate synthase 0.92 30
Escherichia coli ECRC100 0.49 OKFHMN_10720 leuB 3-isopropylmalate dehydrogenase 0.14 OKFHMN_18090 argG argininosuccinate synthase 0.96 44
Escherichia coli BW25113 0.49 b0073 leuB 3-isopropylmalate dehydrogenase (VIMSS) 0.14 b3172 argG argininosuccinate synthase (NCBI) 0.91 40
Escherichia coli BL21 0.49 ECD_00075 3-isopropylmalate dehydrogenase, NAD(+)-dependent 0.14 ECD_03038 argininosuccinate synthetase 0.84 40
Escherichia coli ECRC62 0.49 BNILDI_08545 leuA 2-isopropylmalate synthase 0.14 BNILDI_01645 argG argininosuccinate synthase 0.98 7
Escherichia coli ECOR27 0.49 NOLOHH_03065 leuA 2-isopropylmalate synthase 0.14 NOLOHH_09890 argG argininosuccinate synthase 0.91 44
Escherichia coli HS(pFamp)R (ATCC 700891) 0.49 OHPLBJKB_03584 3-isopropylmalate dehydrogenase 0.14 OHPLBJKB_00528 Argininosuccinate synthase low > 73
Vibrio cholerae E7946 ATCC 55056 0.49 CSW01_12600 3-isopropylmalate dehydrogenase 0.47 CSW01_13370 argininosuccinate synthase low > 62
Shewanella loihica PV-4 0.48 Shew_3471 3-isopropylmalate dehydrogenase (RefSeq) 0.45 Shew_0205 argininosuccinate synthase (RefSeq) 0.98 23
Shewanella oneidensis MR-1 0.48 SO4235 leuB 3-isopropylmalate dehydrogenase (NCBI ptt file) 0.46 SO0278 argG argininosuccinate synthase (NCBI ptt file) 0.95 29
Rhodopseudomonas palustris CGA009 0.48 TX73_001175 3-isopropylmalate dehydrogenase 0.14 TX73_002040 argininosuccinate synthase — —
Pedobacter sp. GW460-11-11-14-LB5 0.48 CA265_RS15850 3-isopropylmalate dehydrogenase 0.18 CA265_RS18545 argininosuccinate synthase 0.95 8
Shewanella sp. ANA-3 0.48 Shewana3_3760 3-isopropylmalate dehydrogenase (RefSeq) 0.46 Shewana3_3902 argininosuccinate synthase (RefSeq) 0.90 45
Caulobacter crescentus NA1000 0.48 CCNA_00193 3-isopropylmalate dehydrogenase 0.67 CCNA_00128 argininosuccinate synthase — —
Caulobacter crescentus NA1000 Δfur 0.48 CCNA_00193 3-isopropylmalate dehydrogenase 0.67 CCNA_00128 argininosuccinate synthase low > 67
Pantoea sp. MT58 0.47 IAI47_16005 3-isopropylmalate dehydrogenase 0.47 IAI47_00915 argininosuccinate synthase 0.97 18
Erwinia tracheiphila SCR3 0.47 LU632_RS02875 leuB 3-isopropylmalate dehydrogenase 0.47 LU632_RS19605 argininosuccinate synthase 0.86 9
Mucilaginibacter yixingensis YX-36 DSM 26809 0.47 ABZR88_RS11605 3-isopropylmalate dehydrogenase 0.19 ABZR88_RS15515 argininosuccinate synthase — —
Shewanella amazonensis SB2B 0.47 Sama_0336 3-isopropylmalate dehydrogenase (RefSeq) 0.45 Sama_0259 argininosuccinate synthase (RefSeq) 0.94 22
Lysobacter sp. OAE881 0.44 ABIE51_RS17585 3-isopropylmalate dehydrogenase 0.19 ABIE51_RS13405 argininosuccinate synthase 0.97 11
Echinicola vietnamensis KMM 6221, DSM 17526 0.44 Echvi_2062 3-isopropylmalate dehydrogenase 0.19 Echvi_3846 argininosuccinate synthase — —
Pontibacter actiniarum KMM 6156, DSM 19842 0.43 CA264_09445 3-isopropylmalate dehydrogenase 0.18 CA264_06255 argininosuccinate synthase low > 74
Brevundimonas sp. GW460-12-10-14-LB2 0.42 A4249_RS09995 3-isopropylmalate dehydrogenase 0.67 A4249_RS14275 argininosuccinate synthase 1.00 1
Rhodanobacter sp. FW510-T8 0.42 OKGIIK_13595 leuB 3-isopropylmalate dehydrogenase 0.19 OKGIIK_09465 argG argininosuccinate synthase low > 52
Rhodanobacter denitrificans MT42 0.41 LRK55_RS09965 3-isopropylmalate dehydrogenase 0.19 LRK55_RS02155 argininosuccinate synthase low > 63
Rhodanobacter denitrificans FW104-10B01 0.41 LRK54_RS10325 3-isopropylmalate dehydrogenase 0.19 LRK54_RS02400 argininosuccinate synthase 0.89 10
Dyella japonica UNC79MFTsu3.2 0.40 ABZR86_RS15950 3-isopropylmalate dehydrogenase 0.20 ABZR86_RS08715 arginosuccinate synthetase (EC 6.3.4.5) (from data) 0.93 37
Parabacteroides merdae CL09T00C40 0.40 HMPREF1078_RS16640 3-isopropylmalate dehydrogenase 0.18 HMPREF1078_RS10575 argininosuccinate synthase 0.97 7
Phocaeicola vulgatus CL09T03C04 0.39 HMPREF1058_RS14565 3-isopropylmalate dehydrogenase 0.17 HMPREF1058_RS08845 argininosuccinate synthase 0.72 35
Phocaeicola dorei CL03T12C01 0.39 ABI39_RS10215 3-isopropylmalate dehydrogenase 0.17 ABI39_RS02975 argininosuccinate synthase 0.76 39
Bacteroides ovatus ATCC 8483 0.39 BACOVA_04600 3-isopropylmalate dehydrogenase 0.17 BACOVA_03590 putative argininosuccinate synthase 0.94 28
Bacteroides stercoris CC31F 0.39 HMPREF1181_RS14125 3-isopropylmalate dehydrogenase 0.17 HMPREF1181_RS03460 argininosuccinate synthase 0.89 24
Bacteroides thetaiotaomicron VPI-5482 0.39 BT1857 3-isopropylmalate dehydrogenase (NCBI ptt file) 0.17 BT3760 arginosuccinate synthetase (EC 6.3.4.5) (from data) 0.90 9
Methanococcus maripaludis S2 0.30 MMP_RS04575 homoisocitrate dehydrogenase 0.39 MMP_RS00425 argininosuccinate synthase — —

Not shown: 10 genomes with orthologs for BPHYT_RS33900 only; 3 genomes with orthologs for BPHYT_RS15920 only