| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Agrobacterium fabrum C58 | 1.0 | Atu2747 | | hypothetical protein | 1.0 | Atu3783 | | glutamate synthase subunit beta | 0.86 | 14 |
| Sinorhizobium meliloti 1021 | 0.77 | SMc02812 | | hypothetical protein | 0.88 | SMc04026 | | glutamate synthase | 0.38 | 95 |
| Rhizobium sp. OAE497 | 0.76 | ABIE40_RS19180 | | YggS family pyridoxal phosphate-dependent enzyme | 0.93 | ABIE40_RS16270 | | glutamate synthase subunit beta | — | — |
| Magnetospirillum magneticum AMB-1 | 0.61 | AMB_RS00120 | | YggS family pyridoxal phosphate-dependent enzyme | 0.54 | AMB_RS11780 | | glutamate synthase subunit beta | low | > 64 |
| Azospirillum sp. SherDot2 | 0.60 | MPMX19_00050 | | Pyridoxal phosphate homeostasis protein | 0.26 | MPMX19_02658 | | Glutamate synthase [NADPH] small chain | low | > 112 |
| Rhodopseudomonas palustris CGA009 | 0.59 | TX73_001485 | | YggS family pyridoxal phosphate-dependent enzyme | 0.58 | TX73_004595 | | glutamate synthase subunit beta | — | — |
| Bosea sp. OAE506 | 0.58 | ABIE41_RS04720 | | YggS family pyridoxal phosphate-dependent enzyme | 0.66 | ABIE41_RS08570 | | glutamate synthase subunit beta | — | — |
| Rhodospirillum rubrum S1H | 0.57 | Rru_A3634 | | Protein of unknown function UPF0001 (NCBI) | 0.23 | Rru_A0018 | | Glutamate synthase, NADH/NADPH, small subunit 2 (NCBI) | — | — |
| Dinoroseobacter shibae DFL-12 | 0.53 | Dshi_0042 | | alanine racemase domain protein (RefSeq) | 0.23 | Dshi_0001 | | glutamate synthase, small subunit (RefSeq) | low | > 64 |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.53 | A4249_RS13760 | | YggS family pyridoxal phosphate-dependent enzyme | 0.26 | A4249_RS16110 | | NAD(P)-dependent oxidoreductase | low | > 48 |
| Ralstonia solanacearum GMI1000 | 0.53 | RS_RS20395 | | YggS family pyridoxal phosphate-dependent enzyme | 0.49 | RS_RS14855 | | glutamate synthase subunit beta | low | > 80 |
| Phaeobacter inhibens DSM 17395 | 0.53 | PGA1_c33360 | | putative alanine racemase | 0.23 | PGA1_c36090 | | glutamate synthase [NADPH] small chain | low | > 62 |
| Caulobacter crescentus NA1000 | 0.51 | CCNA_03861 | | pyridoxal 5'-phosphate dependent enzyme class III | 0.24 | CCNA_03721 | | glutamate synthase (NADPH) small chain GltD | low | > 66 |
| Caulobacter crescentus NA1000 Δfur | 0.51 | CCNA_03861 | | pyridoxal 5'-phosphate dependent enzyme class III | 0.24 | CCNA_03721 | | glutamate synthase (NADPH) small chain GltD | low | > 67 |
| Ralstonia solanacearum PSI07 | 0.51 | RPSI07_RS02580 | | YggS family pyridoxal phosphate-dependent enzyme | 0.47 | RPSI07_RS10325 | | glutamate synthase subunit beta | low | > 81 |
| Ralstonia solanacearum UW163 | 0.51 | UW163_RS18890 | | YggS family pyridoxal phosphate-dependent enzyme | 0.48 | UW163_RS06705 | | glutamate synthase subunit beta | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.51 | RALBFv3_RS20285 | | YggS family pyridoxal phosphate-dependent enzyme | 0.48 | RALBFv3_RS06910 | | glutamate synthase subunit beta | low | > 76 |
| Sphingomonas koreensis DSMZ 15582 | 0.49 | Ga0059261_2216 | | pyridoxal phosphate enzyme, YggS family | 0.25 | Ga0059261_1797 | | glutamate synthase small subunit family protein, proteobacterial | low | > 68 |
| Dickeya dianthicola ME23 | 0.40 | DZA65_RS03335 | | YggS family pyridoxal phosphate-dependent enzyme | 0.26 | DZA65_RS01630 | | FAD-dependent oxidoreductase | low | > 75 |
| Shewanella loihica PV-4 | 0.37 | Shew_1137 | | alanine racemase domain-containing protein (RefSeq) | 0.27 | Shew_1031 | gltD | glutamate synthase subunit beta (RefSeq) | low | > 60 |
| Herbaspirillum seropedicae SmR1 | 0.35 | HSERO_RS18995 | | hypothetical protein | 0.48 | HSERO_RS19590 | | dihydropyrimidine dehydrogenase subunit A | low | > 78 |
| Paraburkholderia sabiae LMG 24235 | 0.35 | QEN71_RS26595 | | YggS family pyridoxal phosphate-dependent enzyme | 0.50 | QEN71_RS28005 | | glutamate synthase subunit beta | low | > 153 |
| Paraburkholderia graminis OAS925 | 0.34 | ABIE53_000841 | | pyridoxal phosphate enzyme (YggS family) | 0.50 | ABIE53_003732 | | glutamate synthase (NADPH/NADH) small chain | — | — |
| Burkholderia phytofirmans PsJN | 0.34 | BPHYT_RS03495 | | hypothetical protein | 0.50 | BPHYT_RS17850 | | dihydropyrimidine dehydrogenase subunit A | — | — |
| Shewanella sp. ANA-3 | 0.34 | Shewana3_1194 | | hypothetical protein (RefSeq) | 0.26 | Shewana3_3051 | gltD | glutamate synthase subunit beta (RefSeq) | low | > 73 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.34 | H281DRAFT_04680 | | hypothetical protein | 0.49 | H281DRAFT_05621 | | glutamate synthase (NADH) small subunit | low | > 103 |
| Vibrio cholerae E7946 ATCC 55056 | 0.34 | CSW01_02455 | | YggS family pyridoxal phosphate enzyme | 0.43 | CSW01_12025 | | glutamate synthase subunit beta | low | > 62 |
| Ralstonia sp. UNC404CL21Col | 0.33 | ABZR87_RS01225 | | YggS family pyridoxal phosphate-dependent enzyme | 0.50 | ABZR87_RS02565 | | glutamate synthase subunit beta | low | > 80 |
| Dickeya dadantii 3937 | 0.33 | DDA3937_RS17300 | | YggS family pyridoxal phosphate-dependent enzyme | 0.26 | DDA3937_RS01660 | | FAD-dependent oxidoreductase | low | > 74 |
| Shewanella amazonensis SB2B | 0.33 | Sama_2477 | | hypothetical protein (RefSeq) | 0.26 | Sama_0856 | gltD | glutamate synthase subunit beta (RefSeq) | low | > 62 |
| Alteromonas macleodii MIT1002 | 0.33 | MIT1002_03061 | | pyridoxal phosphate enzyme, YggS family | 0.26 | MIT1002_03140 | | Glutamate synthase [NADPH] small chain | low | > 70 |
| Castellaniella sp019104865 MT123 | 0.33 | ABCV34_RS02955 | | YggS family pyridoxal phosphate-dependent enzyme | 0.48 | ABCV34_RS11155 | | glutamate synthase subunit beta | 0.66 | 42 |
| Enterobacter asburiae PDN3 | 0.32 | EX28DRAFT_2989 | | pyridoxal phosphate enzyme, YggS family | 0.26 | EX28DRAFT_3276 | | glutamate synthase small subunit family protein, proteobacterial | 0.64 | 32 |
| Variovorax sp. OAS795 | 0.32 | ABID97_RS00250 | | YggS family pyridoxal phosphate-dependent enzyme | 0.51 | ABID97_RS23220 | | glutamate synthase subunit beta | — | — |
| Shewanella oneidensis MR-1 | 0.32 | SO3352 | | conserved hypothetical protein TIGR00044 (NCBI ptt file) | 0.26 | SO1324 | gltD | glutamate synthase, small subunit (NCBI ptt file) | low | > 76 |
| Rhodanobacter denitrificans FW104-10B01 | 0.32 | LRK54_RS02905 | | YggS family pyridoxal phosphate-dependent enzyme | 0.26 | LRK54_RS10965 | | FAD-dependent oxidoreductase | low | > 59 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.32 | GFF2722 | | Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC | 0.51 | GFF1326 | | Glutamate synthase [NADPH] small chain (EC 1.4.1.13) | low | > 90 |
| Rhodanobacter denitrificans MT42 | 0.32 | LRK55_RS02655 | | YggS family pyridoxal phosphate-dependent enzyme | 0.26 | LRK55_RS10670 | | FAD-dependent oxidoreductase | low | > 63 |
| Pseudomonas syringae pv. syringae B728a | 0.31 | Psyr_0477 | | Protein of unknown function UPF0001 | 0.26 | Psyr_0412 | | glutamate synthase (NADPH) small subunit | low | > 86 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.31 | Psyr_0477 | | Protein of unknown function UPF0001 | 0.26 | Psyr_0412 | | glutamate synthase (NADPH) small subunit | 0.47 | 84 |
| Pseudomonas fluorescens FW300-N2E3 | 0.31 | AO353_10505 | | hypothetical protein | 0.26 | AO353_12520 | | glutamate synthase | low | > 101 |
| Klebsiella michiganensis M5al | 0.31 | BWI76_RS24100 | | YggS family pyridoxal phosphate enzyme | 0.26 | BWI76_RS25320 | | glutamate synthase | low | > 92 |
| Lysobacter sp. OAE881 | 0.31 | ABIE51_RS16060 | | YggS family pyridoxal phosphate-dependent enzyme | 0.25 | ABIE51_RS01315 | | FAD-dependent oxidoreductase | low | > 62 |
| Variovorax sp. SCN45 | 0.31 | GFF3744 | | Pyridoxal phosphate-containing protein YggS | 0.48 | GFF5333 | | Glutamate synthase [NADPH] small chain (EC 1.4.1.13) | — | — |
| Dickeya dianthicola 67-19 | 0.31 | HGI48_RS17345 | | YggS family pyridoxal phosphate-dependent enzyme | 0.26 | HGI48_RS01555 | | glutamate synthase small subunit | low | > 71 |
| Pectobacterium carotovorum WPP14 | 0.30 | HER17_RS03810 | | YggS family pyridoxal phosphate-dependent enzyme | 0.26 | HER17_RS19915 | | glutamate synthase small subunit | low | > 75 |
| Enterobacter sp. TBS_079 | 0.30 | MPMX20_03809 | | Pyridoxal phosphate homeostasis protein | 0.27 | MPMX20_04127 | | Glutamate synthase [NADPH] small chain | low | > 85 |
| Pseudomonas sp. S08-1 | 0.30 | OH686_10975 | | Pyridoxal phosphate-containing protein YggS | 0.26 | OH686_10000 | | Glutamate synthase [NADPH] small chain | low | > 80 |
| Escherichia fergusonii Becca | 0.30 | EFB2_00951 | | Pyridoxal phosphate homeostasis protein | 0.26 | EFB2_00610 | | Glutamate synthase [NADPH] small chain | low | > 86 |
| Escherichia coli ECRC101 | 0.30 | MCAODC_09775 | yggS | pyridoxal phosphate homeostasis protein | 0.27 | MCAODC_08400 | gltD | glutamate synthase subunit GltD | — | — |
| Escherichia coli ECOR27 | 0.30 | NOLOHH_11125 | yggS | pyridoxal phosphate homeostasis protein | 0.26 | NOLOHH_09680 | gltD | glutamate synthase subunit GltD | low | > 57 |
| Escherichia coli ECRC62 | 0.30 | BNILDI_09705 | yggS | pyridoxal phosphate homeostasis protein | 0.26 | BNILDI_01855 | gltD | glutamate synthase subunit GltD | — | — |
| Escherichia coli ECRC98 | 0.30 | JDDGAC_22885 | yggS | pyridoxal phosphate homeostasis protein | 0.27 | JDDGAC_21505 | gltD | glutamate synthase subunit GltD | — | — |
| Escherichia coli BL21 | 0.30 | ECD_02781 | | UPF0001 family protein, PLP-binding | 0.26 | ECD_03078 | | glutamate synthase, 4Fe-4S protein, small subunit | low | > 60 |
| Escherichia coli BW25113 | 0.30 | b2951 | yggS | predicted enzyme (NCBI) | 0.26 | b3213 | gltD | glutamate synthase, 4Fe-4S protein, small subunit (NCBI) | low | > 76 |
| Escherichia coli ECRC101 | 0.30 | OKFHMN_19255 | yggS | pyridoxal phosphate homeostasis protein | 0.27 | OKFHMN_17880 | gltD | glutamate synthase subunit GltD | — | — |
| Escherichia coli ECRC102 | 0.30 | NIAGMN_17020 | yggS | pyridoxal phosphate homeostasis protein | 0.27 | NIAGMN_15640 | gltD | glutamate synthase subunit GltD | — | — |
| Escherichia coli ECOR38 | 0.30 | HEPCGN_18560 | yggS | pyridoxal phosphate homeostasis protein | 0.27 | HEPCGN_16755 | gltD | glutamate synthase subunit GltD | low | > 85 |
| Desulfovibrio vulgaris Hildenborough JW710 | 0.30 | DVU0051 | | conserved hypothetical protein TIGR00044 (TIGR) | 0.19 | DVU2476 | gltA | glutamate synthase, small subunit (TIGR) | low | > 55 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.30 | OHPLBJKB_00765 | | Pyridoxal phosphate homeostasis protein | 0.26 | OHPLBJKB_00487 | | Glutamate synthase [NADPH] small chain | low | > 73 |
| Escherichia coli Nissle 1917 | 0.30 | ECOLIN_RS16415 | | pyridoxal phosphate homeostasis protein | 0.27 | ECOLIN_RS18480 | | glutamate synthase subunit GltD | low | > 52 |
| Escherichia coli ECRC99 | 0.30 | KEDOAH_08885 | yggS | pyridoxal phosphate homeostasis protein | 0.27 | KEDOAH_10270 | gltD | glutamate synthase subunit GltD | — | — |
| Dechlorosoma suillum PS | 0.30 | Dsui_0603 | | pyridoxal phosphate enzyme, YggS family | 0.48 | Dsui_1097 | | NADH/NADPH-dependent glutamate synthase small subunit | low | > 51 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.30 | GFF3054 | | Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC | 0.26 | GFF2957 | | Glutamate synthase [NADPH] small chain (EC 1.4.1.13) | low | > 78 |
| Rhodanobacter sp. FW510-T8 | 0.29 | OKGIIK_09885 | | Pyridoxal phosphate homeostasis protein | 0.47 | OKGIIK_15205 | | Glutamate synthase | low | > 52 |
| Dyella japonica UNC79MFTsu3.2 | 0.29 | ABZR86_RS09305 | | YggS family pyridoxal phosphate-dependent enzyme | 0.25 | ABZR86_RS16800 | | FAD-dependent oxidoreductase | — | — |
| Pseudomonas stutzeri RCH2 | 0.29 | Psest_0284 | | pyridoxal phosphate enzyme, YggS family | 0.26 | Psest_3710 | | glutamate synthase small subunit family protein, proteobacterial | low | > 67 |
| Acidovorax sp. GW101-3H11 | 0.29 | Ac3H11_4474 | | Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC | 0.50 | Ac3H11_4711 | | Glutamate synthase [NADPH] small chain (EC 1.4.1.13) | low | > 79 |
| Rahnella sp. WP5 | 0.29 | EX31_RS02685 | | YggS family pyridoxal phosphate-dependent enzyme | 0.26 | EX31_RS12510 | | FAD-dependent oxidoreductase | low | > 89 |
| Pseudomonas fluorescens FW300-N2C3 | 0.29 | AO356_13425 | | hypothetical protein | 0.26 | AO356_09370 | | glutamate synthase | 0.22 | 99 |
| Pseudomonas simiae WCS417 | 0.28 | PS417_26725 | | hypothetical protein | 0.26 | PS417_02005 | | glutamate synthase | 0.29 | 47 |
| Pseudomonas putida KT2440 | 0.28 | PP_5094 | | putative enzyme with PLP binding domain | 0.25 | PP_5075 | | glutamate synthase (NADPH) beta subunit | low | > 96 |
| Erwinia tracheiphila SCR3 | 0.28 | LU632_RS05460 | | YggS family pyridoxal phosphate-dependent enzyme | 0.26 | LU632_RS21320 | | glutamate synthase small subunit | 0.58 | 52 |
| Cupriavidus basilensis FW507-4G11 | 0.28 | RR42_RS17355 | | hypothetical protein | 0.52 | RR42_RS18985 | | glutamate synthase | low | > 128 |
| Pseudomonas fluorescens GW456-L13 | 0.27 | PfGW456L13_1011 | | Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC | 0.26 | PfGW456L13_271 | | Glutamate synthase [NADPH] small chain (EC 1.4.1.13) | low | > 87 |
| Pseudomonas fluorescens SBW25-INTG | 0.27 | PFLU_RS28370 | | YggS family pyridoxal phosphate-dependent enzyme | 0.26 | PFLU_RS02050 | | NAD(P)-binding protein | low | > 109 |
| Pseudomonas fluorescens SBW25 | 0.27 | PFLU_RS28370 | | YggS family pyridoxal phosphate-dependent enzyme | 0.26 | PFLU_RS02050 | | NAD(P)-binding protein | low | > 109 |
| Acinetobacter radioresistens SK82 | 0.27 | MPMX26_02404 | | Pyridoxal phosphate homeostasis protein | 0.27 | MPMX26_02807 | | Glutamate synthase [NADPH] small chain | low | > 36 |
| Pseudomonas fluorescens FW300-N2E2 | 0.27 | Pf6N2E2_4601 | | Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC | 0.26 | Pf6N2E2_3751 | | Glutamate synthase [NADPH] small chain (EC 1.4.1.13) | low | > 103 |
| Desulfovibrio vulgaris Miyazaki F | 0.27 | DvMF_2208 | | alanine racemase domain protein (RefSeq) | 0.18 | DvMF_0938 | | putative oxidoreductase (RefSeq) | low | > 51 |
| Marinobacter adhaerens HP15 | 0.26 | HP15_288 | | alanine racemase domain protein | 0.26 | HP15_483 | | oxidoreductase Fe-S binding subunit | — | — |
| Pseudomonas sp. RS175 | 0.26 | PFR28_04242 | | Pyridoxal phosphate homeostasis protein | 0.26 | PFR28_05016 | | Glutamate synthase [NADPH] small chain | low | > 88 |
| Parabacteroides merdae CL09T00C40 | 0.25 | HMPREF1078_RS15965 | | YggS family pyridoxal phosphate-dependent enzyme | 0.37 | HMPREF1078_RS01265 | | glutamate synthase subunit beta | low | > 61 |
| Mucilaginibacter yixingensis YX-36 DSM 26809 | 0.25 | ABZR88_RS11740 | | YggS family pyridoxal phosphate-dependent enzyme | 0.42 | ABZR88_RS06910 | | glutamate synthase subunit beta | low | > 71 |
| Serratia liquefaciens MT49 | 0.25 | IAI46_21410 | | YggS family pyridoxal phosphate-dependent enzyme | 0.25 | IAI46_22350 | | glutamate synthase small subunit | low | > 86 |
| Bacteroides thetaiotaomicron VPI-5482 | 0.25 | BT1332 | | conserved hypothetical protein (NCBI ptt file) | 0.32 | BT0552 | | glutamate synthase, small subunit (NCBI ptt file) | low | > 81 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.25 | Xcc-8004.1711.1 | | Hypothetical protein YggS, proline synthase co-transcribed bacterial homolog PROSC | 0.25 | Xcc-8004.43.1 | | Glutamate synthase [NADPH] small chain (EC 1.4.1.13) | low | > 74 |
| Echinicola vietnamensis KMM 6221, DSM 17526 | 0.24 | Echvi_2233 | | pyridoxal phosphate enzyme, YggS family | 0.42 | Echvi_1243 | | glutamate synthases, NADH/NADPH, small subunit | low | > 79 |
| Bacteroides ovatus ATCC 8483 | 0.24 | BACOVA_00593 | | pyridoxal phosphate enzyme, YggS family | 0.32 | BACOVA_03757 | | pyridine nucleotide-disulfide oxidoreductase | low | > 94 |
| Bacteroides stercoris CC31F | 0.23 | HMPREF1181_RS10865 | | YggS family pyridoxal phosphate-dependent enzyme | 0.31 | HMPREF1181_RS16050 | | glutamate synthase subunit beta | low | > 56 |
| Pedobacter sp. GW460-11-11-14-LB5 | 0.23 | CA265_RS06285 | | YggS family pyridoxal phosphate enzyme | 0.45 | CA265_RS08705 | | glutamate synthase | low | > 88 |
| Mycobacterium tuberculosis H37Rv | 0.21 | Rv2148c | | Conserved protein | 0.43 | Rv3858c | | Probable NADH-dependent glutamate synthase (small subunit) GltD (L-glutamate synthase) (L-glutamate synthetase) (NADH-glutamate synthase) (glutamate synthase (NADH)) (GLTS beta chain) (NADPH-GOGAT) | — | — |
| Bifidobacterium breve UCC2003 | 0.21 | BBR_RS11570 | | YggS family pyridoxal phosphate-dependent enzyme | 0.37 | BBR_RS15260 | | glutamate synthase subunit beta | low | > 34 |
| Phocaeicola vulgatus CL09T03C04 | 0.21 | HMPREF1058_RS06240 | | YggS family pyridoxal phosphate-dependent enzyme | 0.31 | HMPREF1058_RS06925 | | glutamate synthase subunit beta | low | > 67 |
| Phocaeicola dorei CL03T12C01 | 0.21 | ABI39_RS20000 | | YggS family pyridoxal phosphate-dependent enzyme | 0.32 | ABI39_RS20690 | | glutamate synthase subunit beta | low | > 72 |
Not shown: 6 genomes with orthologs for Atu2747 only; 1 genomes with orthologs for Atu3783 only