Conservation of cofitness between Atu1464 and Atu2791 in Agrobacterium fabrum C58

94 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Agrobacterium fabrum C58 1.0 Atu1464 glycine cleavage system T protein, aminomethyltransferase 1.0 Atu2791 3-isopropylmalate dehydrogenase 0.75 8
Rhizobium sp. OAE497 0.81 ABIE40_RS09940 glycine cleavage system aminomethyltransferase GcvT 0.89 ABIE40_RS19050 3-isopropylmalate dehydrogenase 0.76 11
Sinorhizobium meliloti 1021 0.76 SMc02047 glycine cleavage system aminomethyltransferase T 0.90 SMc04405 3-isopropylmalate dehydrogenase low > 103
Rhodopseudomonas palustris CGA009 0.68 TX73_019925 glycine cleavage system aminomethyltransferase GcvT 0.72 TX73_001175 3-isopropylmalate dehydrogenase — —
Pseudomonas syringae pv. syringae B728a 0.58 Psyr_1095 Glycine cleavage system T protein 0.55 Psyr_1985 3-isopropylmalate dehydrogenase low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.58 Psyr_1095 Glycine cleavage system T protein 0.55 Psyr_1985 3-isopropylmalate dehydrogenase low > 86
Pseudomonas sp. RS175 0.56 PFR28_03385 Aminomethyltransferase 0.56 PFR28_02821 3-isopropylmalate dehydrogenase low > 88
Pseudomonas fluorescens FW300-N2C3 0.56 AO356_18160 glycine cleavage system protein T 0.56 AO356_21415 3-isopropylmalate dehydrogenase low > 104
Pseudomonas putida KT2440 0.55 PP_0986 aminomethyltransferase 0.55 PP_1988 3-isopropylmalate dehydrogenase 0.22 36
Vibrio cholerae E7946 ATCC 55056 0.55 CSW01_15350 glycine cleavage system aminomethyltransferase T 0.43 CSW01_12600 3-isopropylmalate dehydrogenase low > 62
Pseudomonas fluorescens FW300-N2E2 0.55 Pf6N2E2_5556 Aminomethyltransferase (EC 2.1.2.10) (from data) 0.56 Pf6N2E2_66 3-isopropylmalate dehydrogenase (EC 1.1.1.85) low > 103
Pseudomonas fluorescens SBW25 0.55 PFLU_RS24010 glycine cleavage system aminomethyltransferase GcvT 0.57 PFLU_RS20565 3-isopropylmalate dehydrogenase low > 109
Pseudomonas fluorescens SBW25-INTG 0.55 PFLU_RS24010 glycine cleavage system aminomethyltransferase GcvT 0.57 PFLU_RS20565 3-isopropylmalate dehydrogenase low > 109
Pseudomonas simiae WCS417 0.55 PS417_22370 Aminomethyltransferase (EC 2.1.2.10) (from data) 0.57 PS417_18585 3-isopropylmalate dehydrogenase low > 88
Rhodospirillum rubrum S1H 0.54 Rru_A3051 Glycine cleavage system T protein (NCBI) 0.57 Rru_A1191 3-isopropylmalate dehydrogenase (NCBI) low > 58
Pseudomonas fluorescens FW300-N2E3 0.54 AO353_03510 glycine cleavage system protein T 0.55 AO353_20635 3-isopropylmalate dehydrogenase low > 101
Phaeobacter inhibens DSM 17395 0.53 PGA1_78p00290 aminomethyltransferase GcvT 0.57 PGA1_c29830 3-isopropylmalate dehydrogenase LeuB — —
Azospirillum sp. SherDot2 0.53 MPMX19_01029 Aminomethyltransferase 0.64 MPMX19_00607 3-isopropylmalate dehydrogenase low > 112
Pseudomonas fluorescens FW300-N1B4 0.53 Pf1N1B4_623 Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) 0.56 Pf1N1B4_12 3-isopropylmalate dehydrogenase (EC 1.1.1.85) low > 87
Acidovorax sp. GW101-3H11 0.53 Ac3H11_165 Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) 0.47 Ac3H11_1528 3-isopropylmalate dehydrogenase (EC 1.1.1.85) low > 79
Pseudomonas fluorescens GW456-L13 0.53 PfGW456L13_1866 Aminomethyltransferase (EC 2.1.2.10) (from data) 0.54 PfGW456L13_3945 3-isopropylmalate dehydrogenase (EC 1.1.1.85) low > 87
Magnetospirillum magneticum AMB-1 0.52 AMB_RS03925 glycine cleavage system protein T 0.55 AMB_RS20570 3-isopropylmalate dehydrogenase — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.52 GFF5213 Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) 0.48 GFF3360 3-isopropylmalate dehydrogenase (EC 1.1.1.85) low > 90
Azospirillum brasilense Sp245 0.52 AZOBR_RS10470 aminomethyltransferase 0.63 AZOBR_RS14130 3-isopropylmalate dehydrogenase low > 97
Variovorax sp. SCN45 0.49 GFF6476 Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) 0.48 GFF3888 3-isopropylmalate dehydrogenase (EC 1.1.1.85) low > 127
Bosea sp. OAE506 0.48 ABIE41_RS22930 glycine cleavage system aminomethyltransferase GcvT 0.69 ABIE41_RS11860 3-isopropylmalate dehydrogenase — —
Caulobacter crescentus NA1000 Δfur 0.45 CCNA_03465 glycine cleavage system aminomethyltransferase T 0.56 CCNA_00193 3-isopropylmalate dehydrogenase low > 67
Caulobacter crescentus NA1000 0.45 CCNA_03465 glycine cleavage system aminomethyltransferase T 0.56 CCNA_00193 3-isopropylmalate dehydrogenase low > 66
Brevundimonas sp. GW460-12-10-14-LB2 0.43 A4249_RS09325 glycine cleavage system aminomethyltransferase GcvT 0.40 A4249_RS09995 3-isopropylmalate dehydrogenase low > 48
Sphingomonas koreensis DSMZ 15582 0.42 Ga0059261_3256 glycine cleavage system T protein 0.43 Ga0059261_3190 3-isopropylmalate dehydrogenase low > 68
Dinoroseobacter shibae DFL-12 0.40 Dshi_2682 glycine cleavage system T protein (RefSeq) 0.61 Dshi_0081 3-isopropylmalate dehydrogenase (RefSeq) — —
Pontibacter actiniarum KMM 6156, DSM 19842 0.29 CA264_00210 glycine cleavage system protein T 0.35 CA264_09445 3-isopropylmalate dehydrogenase — —
Synechococcus elongatus PCC 7942 0.29 Synpcc7942_2308 gcvT glycine cleavage system aminomethyltransferase T 0.45 Synpcc7942_1505 leuB 3-isopropylmalate dehydrogenase — —
Pedobacter sp. GW460-11-11-14-LB5 0.28 CA265_RS23960 glycine cleavage system protein T 0.40 CA265_RS15850 3-isopropylmalate dehydrogenase low > 88
Mucilaginibacter yixingensis YX-36 DSM 26809 0.28 ABZR88_RS21210 glycine cleavage system aminomethyltransferase GcvT 0.41 ABZR88_RS11605 3-isopropylmalate dehydrogenase — —
Echinicola vietnamensis KMM 6221, DSM 17526 0.28 Echvi_0091 glycine cleavage system T protein 0.38 Echvi_2062 3-isopropylmalate dehydrogenase — —
Phocaeicola vulgatus CL09T03C04 0.26 HMPREF1058_RS04685 glycine cleavage system aminomethyltransferase GcvT 0.33 HMPREF1058_RS14565 3-isopropylmalate dehydrogenase low > 67
Desulfovibrio vulgaris Miyazaki F 0.26 DvMF_0341 glycine cleavage system T protein (RefSeq) 0.46 DvMF_1794 3-isopropylmalate dehydrogenase (RefSeq) low > 51
Desulfovibrio vulgaris Hildenborough JW710 0.26 DVU1684 gcvT glycine cleavage system T protein (TIGR) 0.45 DVU2985 leuB 3-isopropylmalate dehydrogenase (TIGR) low > 55
Phocaeicola dorei CL03T12C01 0.26 ABI39_RS18950 glycine cleavage system aminomethyltransferase GcvT 0.33 ABI39_RS10215 3-isopropylmalate dehydrogenase low > 72
Parabacteroides merdae CL09T00C40 0.26 HMPREF1078_RS10420 glycine cleavage system aminomethyltransferase GcvT 0.33 HMPREF1078_RS16640 3-isopropylmalate dehydrogenase low > 61
Bacteroides thetaiotaomicron VPI-5482 0.26 BT4584 putative aminomethyltransferase (NCBI ptt file) 0.32 BT1857 3-isopropylmalate dehydrogenase (NCBI ptt file) low > 81
Pseudomonas sp. S08-1 0.25 OH686_11175 glycine cleavage system T protein 0.53 OH686_04470 3-isopropylmalate dehydrogenase low > 80
Bacteroides ovatus ATCC 8483 0.25 BACOVA_05378 aminomethyltransferase 0.32 BACOVA_04600 3-isopropylmalate dehydrogenase low > 94
Shewanella loihica PV-4 0.25 Shew_3064 gcvT glycine cleavage system aminomethyltransferase T (RefSeq) 0.38 Shew_3471 3-isopropylmalate dehydrogenase (RefSeq) low > 60
Dechlorosoma suillum PS 0.25 Dsui_2735 glycine cleavage system T protein 0.52 Dsui_3198 3-isopropylmalate dehydrogenase — —
Bacteroides stercoris CC31F 0.25 HMPREF1181_RS13255 glycine cleavage system aminomethyltransferase GcvT 0.33 HMPREF1181_RS14125 3-isopropylmalate dehydrogenase low > 56
Shewanella oneidensis MR-1 0.25 SO0779 gcvT glycine cleavage system T protein (NCBI ptt file) 0.39 SO4235 leuB 3-isopropylmalate dehydrogenase (NCBI ptt file) 0.70 26
Paraburkholderia sabiae LMG 24235 0.25 QEN71_RS29205 glycine cleavage system aminomethyltransferase GcvT 0.47 QEN71_RS17620 3-isopropylmalate dehydrogenase low > 153
Burkholderia phytofirmans PsJN 0.25 BPHYT_RS19320 glycine cleavage system protein T 0.47 BPHYT_RS33900 3-isopropylmalate dehydrogenase low > 109
Shewanella sp. ANA-3 0.25 Shewana3_3501 gcvT glycine cleavage system aminomethyltransferase T (RefSeq) 0.39 Shewana3_3760 3-isopropylmalate dehydrogenase (RefSeq) low > 73
Paraburkholderia graminis OAS925 0.24 ABIE53_000236 aminomethyltransferase 0.47 ABIE53_004804 3-isopropylmalate dehydrogenase low > 113
Dyella japonica UNC79MFTsu3.2 0.24 ABZR86_RS18875 glycine cleavage system aminomethyltransferase GcvT 0.35 ABZR86_RS15950 3-isopropylmalate dehydrogenase 0.87 18
Pseudomonas stutzeri RCH2 0.24 Psest_0181 glycine cleavage system T protein 0.54 Psest_2589 3-isopropylmalate dehydrogenase low > 67
Paraburkholderia bryophila 376MFSha3.1 0.24 H281DRAFT_02411 aminomethyltransferase 0.47 H281DRAFT_06072 3-isopropylmalate dehydrogenase low > 103
Rhodanobacter denitrificans FW104-10B01 0.24 LRK54_RS05510 glycine cleavage system aminomethyltransferase GcvT 0.37 LRK54_RS10325 3-isopropylmalate dehydrogenase low > 59
Rhodanobacter denitrificans MT42 0.24 LRK55_RS05280 glycine cleavage system aminomethyltransferase GcvT 0.37 LRK55_RS09965 3-isopropylmalate dehydrogenase low > 63
Lysobacter sp. OAE881 0.24 ABIE51_RS16365 glycine cleavage system aminomethyltransferase GcvT 0.39 ABIE51_RS17585 3-isopropylmalate dehydrogenase low > 62
Rhodanobacter sp. FW510-T8 0.23 OKGIIK_01305 gcvT glycine cleavage system aminomethyltransferase GcvT 0.39 OKGIIK_13595 leuB 3-isopropylmalate dehydrogenase low > 52
Escherichia fergusonii Becca 0.23 EFB2_00997 Aminomethyltransferase 0.44 EFB2_03972 3-isopropylmalate dehydrogenase low > 86
Cupriavidus basilensis FW507-4G11 0.23 RR42_RS20060 glycine cleavage system protein T 0.48 RR42_RS14385 3-isopropylmalate dehydrogenase low > 128
Escherichia coli BW25113 0.23 b2905 gcvT glycine cleavage system aminomethyltransferase T (NCBI) 0.44 b0073 leuB 3-isopropylmalate dehydrogenase (VIMSS) low > 76
Escherichia coli ECRC99 0.23 KEDOAH_08620 gcvT glycine cleavage system aminomethyltransferase GcvT 0.44 KEDOAH_17435 leuB 3-isopropylmalate dehydrogenase — —
Escherichia coli ECRC101 0.23 OKFHMN_19520 gcvT glycine cleavage system aminomethyltransferase GcvT 0.44 OKFHMN_10720 leuB 3-isopropylmalate dehydrogenase — —
Kangiella aquimarina DSM 16071 0.23 B158DRAFT_0543 glycine cleavage system T protein 0.53 B158DRAFT_1322 3-isopropylmalate dehydrogenase (EC 1.1.1.85) — —
Escherichia coli ECRC98 0.23 JDDGAC_23160 gcvT glycine cleavage system aminomethyltransferase GcvT 0.44 JDDGAC_14315 leuB 3-isopropylmalate dehydrogenase — —
Shewanella amazonensis SB2B 0.23 Sama_2721 gcvT glycine cleavage system aminomethyltransferase T (RefSeq) 0.38 Sama_0336 3-isopropylmalate dehydrogenase (RefSeq) 0.79 22
Escherichia coli HS(pFamp)R (ATCC 700891) 0.23 OHPLBJKB_00810 Aminomethyltransferase 0.44 OHPLBJKB_03584 3-isopropylmalate dehydrogenase low > 73
Escherichia coli ECRC62 0.23 BNILDI_09970 gcvT glycine cleavage system aminomethyltransferase GcvT 0.44 BNILDI_08545 leuA 2-isopropylmalate synthase — —
Escherichia coli ECRC102 0.23 NIAGMN_17285 gcvT glycine cleavage system aminomethyltransferase GcvT 0.44 NIAGMN_08570 leuB 3-isopropylmalate dehydrogenase — —
Escherichia coli ECOR27 0.23 NOLOHH_11435 gcvT glycine cleavage system aminomethyltransferase GcvT 0.44 NOLOHH_03065 leuA 2-isopropylmalate synthase low > 57
Escherichia coli BL21 0.23 ECD_02737 aminomethyltransferase, tetrahydrofolate-dependent, subunit (T protein) of glycine cleavage complex 0.44 ECD_00075 3-isopropylmalate dehydrogenase, NAD(+)-dependent low > 60
Escherichia coli ECRC101 0.23 MCAODC_10040 gcvT glycine cleavage system aminomethyltransferase GcvT 0.44 MCAODC_01235 leuB 3-isopropylmalate dehydrogenase — —
Enterobacter asburiae PDN3 0.23 EX28DRAFT_2957 glycine cleavage system T protein 0.44 EX28DRAFT_3669 3-isopropylmalate dehydrogenase low > 76
Escherichia coli ECOR38 0.23 HEPCGN_18810 gcvT glycine cleavage system aminomethyltransferase GcvT 0.44 HEPCGN_08700 leuB 3-isopropylmalate dehydrogenase low > 85
Enterobacter sp. TBS_079 0.23 MPMX20_03764 Aminomethyltransferase 0.44 MPMX20_00768 3-isopropylmalate dehydrogenase low > 85
Escherichia coli Nissle 1917 0.23 ECOLIN_RS16175 glycine cleavage system aminomethyltransferase GcvT 0.44 ECOLIN_RS00395 3-isopropylmalate dehydrogenase low > 52
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.22 GFF3005 Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) 0.44 GFF165 3-isopropylmalate dehydrogenase (EC 1.1.1.85) low > 78
Castellaniella sp019104865 MT123 0.22 ABCV34_RS08845 glycine cleavage system aminomethyltransferase GcvT 0.46 ABCV34_RS04280 3-isopropylmalate dehydrogenase low > 48
Erwinia tracheiphila SCR3 0.22 LU632_RS05905 gcvT glycine cleavage system aminomethyltransferase GcvT 0.41 LU632_RS02875 leuB 3-isopropylmalate dehydrogenase 0.66 8
Xanthomonas campestris pv. campestris strain 8004 0.22 Xcc-8004.1567.1 Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) 0.52 Xcc-8004.1053.1 3-isopropylmalate dehydrogenase (EC 1.1.1.85) low > 74
Dickeya dadantii 3937 0.22 DDA3937_RS03245 glycine cleavage system aminomethyltransferase GcvT 0.42 DDA3937_RS18120 3-isopropylmalate dehydrogenase low > 74
Serratia liquefaciens MT49 0.22 IAI46_20860 glycine cleavage system aminomethyltransferase GcvT 0.43 IAI46_03350 3-isopropylmalate dehydrogenase 0.39 81
Dickeya dianthicola 67-19 0.22 HGI48_RS03390 glycine cleavage system aminomethyltransferase GcvT 0.43 HGI48_RS18060 3-isopropylmalate dehydrogenase low > 71
Dickeya dianthicola ME23 0.22 DZA65_RS03435 glycine cleavage system aminomethyltransferase GcvT 0.43 DZA65_RS19205 3-isopropylmalate dehydrogenase low > 75
Pantoea sp. MT58 0.22 IAI47_03765 glycine cleavage system aminomethyltransferase GcvT 0.41 IAI47_16005 3-isopropylmalate dehydrogenase low > 76
Rahnella sp. WP5 0.21 EX31_RS21510 glycine cleavage system aminomethyltransferase GcvT 0.42 EX31_RS03685 3-isopropylmalate dehydrogenase low > 89
Alteromonas macleodii MIT1002 0.21 MIT1002_02973 Aminomethyltransferase 0.39 MIT1002_00948 3-isopropylmalate dehydrogenase low > 70
Ralstonia sp. UNC404CL21Col 0.21 ABZR87_RS03925 glycine cleavage system aminomethyltransferase GcvT 0.48 ABZR87_RS14530 3-isopropylmalate dehydrogenase low > 80
Pectobacterium carotovorum WPP14 0.21 HER17_RS18005 glycine cleavage system aminomethyltransferase GcvT 0.43 HER17_RS03080 3-isopropylmalate dehydrogenase low > 75
Klebsiella michiganensis M5al 0.21 BWI76_RS23880 Aminomethyltransferase (EC 2.1.2.10) (from data) 0.44 BWI76_RS04675 3-isopropylmalate dehydrogenase low > 92
Ralstonia solanacearum IBSBF1503 0.21 RALBFv3_RS08650 glycine cleavage system protein T 0.48 RALBFv3_RS02610 3-isopropylmalate dehydrogenase low > 76
Ralstonia solanacearum UW163 0.21 UW163_RS04960 glycine cleavage system protein T 0.48 UW163_RS11115 3-isopropylmalate dehydrogenase — —
Ralstonia solanacearum PSI07 0.21 RPSI07_RS08585 glycine cleavage system protein T 0.48 RPSI07_RS14705 3-isopropylmalate dehydrogenase low > 81
Ralstonia solanacearum GMI1000 0.21 RS_RS16500 aminomethyltransferase 0.48 RS_RS09990 3-isopropylmalate dehydrogenase low > 80

Not shown: 1 genomes with orthologs for Atu1464 only; 4 genomes with orthologs for Atu2791 only