Conservation of cofitness between Sama_3299 and Sama_3279 in Shewanella amazonensis SB2B

89 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Shewanella amazonensis SB2B 1.0 Sama_3299 branched-chain amino acid aminotransferase (RefSeq) 1.0 Sama_3279 dihydroxy-acid dehydratase (RefSeq) 0.85 8
Shewanella sp. ANA-3 0.80 Shewana3_3830 branched-chain amino acid aminotransferase (RefSeq) 0.90 Shewana3_0358 dihydroxy-acid dehydratase (RefSeq) 0.83 29
Shewanella oneidensis MR-1 0.80 SO0340 ilvE branched-chain amino acid aminotransferase (NCBI ptt file) 0.89 SO4345 ilvD dihydroxy-acid dehydratase (NCBI ptt file) 0.88 1
Shewanella loihica PV-4 0.80 Shew_0278 branched-chain amino acid aminotransferase (RefSeq) 0.89 Shew_0292 dihydroxy-acid dehydratase (RefSeq) low > 60
Mucilaginibacter yixingensis YX-36 DSM 26809 0.36 ABZR88_RS22095 branched-chain amino acid aminotransferase 0.27 ABZR88_RS11575 dihydroxy-acid dehydratase — —
Mycobacterium tuberculosis H37Rv 0.36 Rv2210c Branched-chain amino acid transaminase IlvE 0.31 Rv0189c Probable dihydroxy-acid dehydratase IlvD (dad) — —
Sphingomonas koreensis DSMZ 15582 0.35 Ga0059261_3811 branched-chain amino acid aminotransferase, group II 0.29 Ga0059261_4216 Dihydroxyacid dehydratase/phosphogluconate dehydratase 0.99 3
Ralstonia sp. UNC404CL21Col 0.35 ABZR87_RS18540 branched-chain amino acid aminotransferase 0.74 ABZR87_RS00240 dihydroxy-acid dehydratase low > 80
Ralstonia solanacearum IBSBF1503 0.35 RALBFv3_RS16875 branched-chain amino acid aminotransferase 0.29 RALBFv3_RS04535 dihydroxy-acid dehydratase — —
Pedobacter sp. GW460-11-11-14-LB5 0.35 CA265_RS22650 branched chain amino acid aminotransferase 0.26 CA265_RS15795 dihydroxy-acid dehydratase 0.92 25
Ralstonia solanacearum UW163 0.35 UW163_RS18230 branched-chain amino acid aminotransferase 0.29 UW163_RS09135 dihydroxy-acid dehydratase — —
Echinicola vietnamensis KMM 6221, DSM 17526 0.34 Echvi_2202 branched-chain amino acid aminotransferase, group II 0.28 Echvi_2055 dihydroxy-acid dehydratase 0.34 41
Xanthomonas campestris pv. campestris strain 8004 0.34 Xcc-8004.4199.1 Branched-chain amino acid aminotransferase (EC 2.6.1.42) 0.74 Xcc-8004.451.1 Dihydroxy-acid dehydratase (EC 4.2.1.9) 0.67 28
Sinorhizobium meliloti 1021 0.33 SMc02896 branched-chain amino acid aminotransferase 0.73 SMc04045 dihydroxy-acid dehydratase low > 103
Rhizobium sp. OAE497 0.33 ABIE40_RS11350 branched-chain amino acid aminotransferase 0.73 ABIE40_RS08005 dihydroxy-acid dehydratase low > 107
Cupriavidus basilensis FW507-4G11 0.33 RR42_RS25890 Branched-chain amino acid aminotransferase (EC 2.6.1.42) (from data) 0.29 RR42_RS16210 dihydroxy-acid dehydratase — —
Ralstonia solanacearum GMI1000 0.32 RS_RS23675 branched-chain amino acid aminotransferase 0.29 RS_RS12105 dihydroxy-acid dehydratase — —
Pontibacter actiniarum KMM 6156, DSM 19842 0.31 CA264_00175 branched chain amino acid aminotransferase 0.27 CA264_06935 dihydroxy-acid dehydratase low > 74
Bifidobacterium breve UCC2003 0.31 BBR_RS15210 branched-chain amino acid aminotransferase 0.57 BBR_RS17635 dihydroxy-acid dehydratase 0.78 1
Rhodopseudomonas palustris CGA009 0.30 TX73_022650 branched-chain amino acid aminotransferase 0.72 TX73_007515 dihydroxy-acid dehydratase — —
Pseudomonas syringae pv. syringae B728a 0.28 Psyr_1148 branched chain amino acid aminotransferase apoenzyme 0.74 Psyr_0469 dihydroxyacid dehydratase 0.66 11
Pseudomonas syringae pv. syringae B728a ΔmexB 0.28 Psyr_1148 branched chain amino acid aminotransferase apoenzyme 0.74 Psyr_0469 dihydroxyacid dehydratase low > 86
Pseudomonas simiae WCS417 0.27 PS417_17565 branched-chain amino acid aminotransferase 0.74 PS417_26890 dihydroxy-acid dehydratase 0.43 16
Bacteroides stercoris CC31F 0.27 HMPREF1181_RS06865 branched-chain amino acid aminotransferase 0.62 HMPREF1181_RS08335 dihydroxy-acid dehydratase 0.56 40
Pseudomonas fluorescens SBW25 0.26 PFLU_RS19375 branched-chain amino acid aminotransferase 0.74 PFLU_RS28535 dihydroxy-acid dehydratase low > 109
Pseudomonas fluorescens FW300-N2C3 0.26 AO356_22970 Branched-chain amino acid aminotransferase (EC 2.6.1.42) (from data) 0.74 AO356_13250 dihydroxy-acid dehydratase low > 104
Pseudomonas fluorescens SBW25-INTG 0.26 PFLU_RS19375 branched-chain amino acid aminotransferase 0.74 PFLU_RS28535 dihydroxy-acid dehydratase low > 109
Pseudomonas fluorescens FW300-N2E2 0.26 Pf6N2E2_477 Branched-chain amino acid aminotransferase (EC 2.6.1.42) 0.74 Pf6N2E2_4564 Dihydroxy-acid dehydratase (EC 4.2.1.9) 0.31 89
Bacteroides ovatus ATCC 8483 0.26 BACOVA_01113 branched-chain-amino-acid transaminase 0.59 BACOVA_03302 dihydroxy-acid dehydratase 0.81 12
Pseudomonas fluorescens FW300-N2E3 0.26 AO353_26655 branched-chain amino acid aminotransferase 0.74 AO353_08345 dihydroxy-acid dehydratase low > 101
Pseudomonas sp. RS175 0.26 PFR28_02449 putative branched-chain-amino-acid aminotransferase 0.75 PFR28_04278 Dihydroxy-acid dehydratase low > 88
Bacteroides thetaiotaomicron VPI-5482 0.26 BT3892 branched-chain amino acid aminotransferase (NCBI ptt file) 0.60 BT2078 dihydroxy-acid dehydratase (NCBI ptt file) — —
Pseudomonas fluorescens FW300-N1B4 0.26 Pf1N1B4_4476 Branched-chain amino acid aminotransferase (EC 2.6.1.42) 0.74 Pf1N1B4_2303 Dihydroxy-acid dehydratase (EC 4.2.1.9) low > 87
Pseudomonas putida KT2440 0.26 PP_3511 Branched-chain-amino-acid aminotransferase 0.74 PP_5128 Dihydroxy-acid dehydratase 0.93 3
Phocaeicola dorei CL03T12C01 0.26 ABI39_RS01415 branched-chain amino acid aminotransferase 0.61 ABI39_RS12715 dihydroxy-acid dehydratase 0.68 8
Phocaeicola vulgatus CL09T03C04 0.26 HMPREF1058_RS02220 branched-chain amino acid aminotransferase 0.61 HMPREF1058_RS16815 dihydroxy-acid dehydratase 0.90 1
Pseudomonas fluorescens GW456-L13 0.25 PfGW456L13_3544 Branched-chain amino acid aminotransferase (EC 2.6.1.42) 0.74 PfGW456L13_973 Dihydroxy-acid dehydratase (EC 4.2.1.9) low > 87
Parabacteroides merdae CL09T00C40 0.25 HMPREF1078_RS07855 branched-chain amino acid aminotransferase 0.62 HMPREF1078_RS16695 dihydroxy-acid dehydratase 0.53 6
Alteromonas macleodii MIT1002 0.19 MIT1002_00377 Branched-chain-amino-acid aminotransferase 2 0.80 MIT1002_04041 Dihydroxy-acid dehydratase 0.98 1
Klebsiella michiganensis M5al 0.17 BWI76_RS00970 branched chain amino acid aminotransferase 0.79 BWI76_RS00975 dihydroxy-acid dehydratase 0.60 2
Dickeya dadantii 3937 0.17 DDA3937_RS20160 branched-chain-amino-acid transaminase 0.78 DDA3937_RS20155 dihydroxy-acid dehydratase 0.82 3
Serratia liquefaciens MT49 0.17 IAI46_24350 branched-chain-amino-acid transaminase 0.80 IAI46_24345 dihydroxy-acid dehydratase low > 86
Dickeya dianthicola ME23 0.17 DZA65_RS21340 branched-chain amino acid transaminase 0.78 DZA65_RS21335 dihydroxy-acid dehydratase 0.86 6
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.17 GFF2902 Branched-chain amino acid aminotransferase (EC 2.6.1.42) 0.79 GFF2901 Dihydroxy-acid dehydratase (EC 4.2.1.9) 0.47 44
Escherichia coli ECRC101 0.17 MCAODC_05150 ilvE branched-chain-amino-acid transaminase 0.80 MCAODC_05145 ilvD dihydroxy-acid dehydratase — —
Escherichia coli ECRC99 0.17 KEDOAH_13505 ilvE branched-chain-amino-acid transaminase 0.80 KEDOAH_13510 ilvD dihydroxy-acid dehydratase — —
Escherichia coli ECOR38 0.17 HEPCGN_13355 ilvE branched-chain-amino-acid transaminase 0.80 HEPCGN_13350 ilvD dihydroxy-acid dehydratase low > 85
Escherichia coli ECRC98 0.17 JDDGAC_18265 ilvE branched-chain-amino-acid transaminase 0.80 JDDGAC_18260 ilvD dihydroxy-acid dehydratase — —
Escherichia fergusonii Becca 0.17 EFB2_04866 Branched-chain-amino-acid aminotransferase 0.80 EFB2_04865 Dihydroxy-acid dehydratase low > 86
Escherichia coli ECRC102 0.17 NIAGMN_12400 ilvE branched-chain-amino-acid transaminase 0.80 NIAGMN_12395 ilvD dihydroxy-acid dehydratase — —
Escherichia coli ECRC101 0.17 OKFHMN_14645 ilvE branched-chain-amino-acid transaminase 0.80 OKFHMN_14640 ilvD dihydroxy-acid dehydratase — —
Pantoea sp. MT58 0.17 IAI47_01030 branched-chain amino acid transaminase 0.79 IAI47_01035 dihydroxy-acid dehydratase 0.99 1
Escherichia coli Nissle 1917 0.17 ECOLIN_RS21660 branched-chain-amino-acid transaminase 0.80 ECOLIN_RS21665 dihydroxy-acid dehydratase low > 52
Escherichia coli BW25113 0.17 b3770 ilvE branched-chain amino acid aminotransferase (NCBI) 0.80 b3771 ilvD dihydroxy-acid dehydratase (NCBI) 0.99 2
Escherichia coli ECOR27 0.17 NOLOHH_06780 ilvE branched-chain-amino-acid transaminase 0.80 NOLOHH_06775 ilvD dihydroxy-acid dehydratase low > 57
Escherichia coli HS(pFamp)R (ATCC 700891) 0.17 OHPLBJKB_04283 Branched-chain-amino-acid aminotransferase 0.80 OHPLBJKB_04282 Dihydroxy-acid dehydratase low > 73
Escherichia coli ECRC62 0.17 BNILDI_04745 ilvE branched-chain-amino-acid transaminase 0.80 BNILDI_04750 ilvD dihydroxy-acid dehydratase — —
Rahnella sp. WP5 0.17 EX31_RS15000 branched-chain amino acid transaminase 0.76 EX31_RS15005 dihydroxy-acid dehydratase 0.89 29
Enterobacter sp. TBS_079 0.17 MPMX20_04500 Branched-chain-amino-acid aminotransferase 0.79 MPMX20_04499 Dihydroxy-acid dehydratase 0.39 31
Escherichia coli BL21 0.17 ECD_03648 branched-chain amino acid aminotransferase 0.80 ECD_03649 dihydroxyacid dehydratase 0.77 8
Dickeya dianthicola 67-19 0.17 HGI48_RS20300 branched-chain-amino-acid transaminase 0.78 HGI48_RS20295 dihydroxy-acid dehydratase low > 71
Pectobacterium carotovorum WPP14 0.16 HER17_RS01070 branched-chain amino acid transaminase 0.80 HER17_RS01075 dihydroxy-acid dehydratase 0.83 45
Erwinia tracheiphila SCR3 0.16 LU632_RS24405 branched-chain amino acid transaminase 0.78 LU632_RS24400 ilvD dihydroxy-acid dehydratase 0.93 4
Enterobacter asburiae PDN3 0.16 EX28DRAFT_4442 branched-chain amino acid aminotransferase, group I 0.79 EX28DRAFT_4443 dihydroxy-acid dehydratase 0.96 1
Vibrio cholerae E7946 ATCC 55056 0.16 CSW01_00145 branched-chain-amino-acid transaminase 0.79 CSW01_00140 dihydroxy-acid dehydratase 0.52 3
Castellaniella sp019104865 MT123 0.14 ABCV34_RS07930 branched-chain amino acid transaminase 0.70 ABCV34_RS14810 dihydroxy-acid dehydratase 0.68 27
Desulfovibrio vulgaris Hildenborough JW710 0.14 DVU3197 ilvE branched-chain amino acid aminotransferase (TIGR) 0.38 DVU3373 ilvD dihydroxy-acid dehydratase (TIGR) 0.95 4
Dechlorosoma suillum PS 0.14 Dsui_3339 branched-chain amino acid aminotransferase, group I 0.74 Dsui_1122 dihydroxy-acid dehydratase — —
Desulfovibrio vulgaris Miyazaki F 0.14 DvMF_2268 branched-chain amino acid aminotransferase (RefSeq) 0.38 DvMF_2034 dihydroxy-acid dehydratase (RefSeq) low > 51
Variovorax sp. OAS795 0.13 ABID97_RS03790 branched-chain amino acid transaminase 0.31 ABID97_RS17500 dihydroxy-acid dehydratase — —
Variovorax sp. SCN45 0.13 GFF5079 Branched-chain amino acid aminotransferase (EC 2.6.1.42) 0.31 GFF471 Dihydroxy-acid dehydratase (EC 4.2.1.9) — —
Acidovorax sp. GW101-3H11 0.13 Ac3H11_3369 Branched-chain amino acid aminotransferase (EC 2.6.1.42) 0.74 Ac3H11_955 Dihydroxy-acid dehydratase (EC 4.2.1.9) low > 79
Hydrogenophaga sp. GW460-11-11-14-LB1 0.13 GFF1835 Branched-chain amino acid aminotransferase (EC 2.6.1.42) 0.66 GFF2073 Dihydroxy-acid dehydratase (EC 4.2.1.9) low > 90
Herbaspirillum seropedicae SmR1 0.12 HSERO_RS03330 branched-chain amino acid aminotransferase 0.71 HSERO_RS02650 dihydroxy-acid dehydratase low > 78
Ralstonia solanacearum PSI07 0.12 RPSI07_RS21175 branched-chain amino acid transaminase 0.29 RPSI07_RS12840 dihydroxy-acid dehydratase — —
Paraburkholderia sabiae LMG 24235 0.12 QEN71_RS02410 branched-chain amino acid transaminase 0.72 QEN71_RS21095 dihydroxy-acid dehydratase low > 153
Burkholderia phytofirmans PsJN 0.12 BPHYT_RS16285 Branched-chain amino acid aminotransferase (EC 2.6.1.42) (from data) 0.72 BPHYT_RS10100 dihydroxy-acid dehydratase low > 109
Pseudomonas sp. S08-1 0.12 OH686_09695 branched-chain amino acid aminotransferase 0.75 OH686_14100 dihydroxy-acid dehydratase low > 80
Paraburkholderia graminis OAS925 0.12 ABIE53_003432 branched-chain amino acid aminotransferase 0.74 ABIE53_006513 dihydroxy-acid dehydratase low > 113
Marinobacter adhaerens HP15 0.12 HP15_436 branched-chain-amino-acid aminotransferase 0.71 HP15_595 dihydroxy-acid dehydratase — —
Paraburkholderia bryophila 376MFSha3.1 0.12 H281DRAFT_04193 branched chain amino acid aminotransferase apoenzyme 0.74 H281DRAFT_05312 dihydroxyacid dehydratase low > 103
Acinetobacter radioresistens SK82 0.11 MPMX26_00445 Branched-chain-amino-acid aminotransferase 0.29 MPMX26_03019 Dihydroxy-acid dehydratase 0.92 19
Rhodanobacter denitrificans MT42 0.11 LRK55_RS11755 branched-chain amino acid transaminase 0.25 LRK55_RS09960 dihydroxy-acid dehydratase low > 63
Rhodanobacter denitrificans FW104-10B01 0.11 LRK54_RS12020 branched-chain amino acid transaminase 0.25 LRK54_RS10320 dihydroxy-acid dehydratase low > 59
Pseudomonas stutzeri RCH2 0.11 Psest_0450 Branched-chain amino acid aminotransferase (EC 2.6.1.42) (from data) 0.74 Psest_0234 dihydroxy-acid dehydratase — —
Synechococcus elongatus PCC 7942 0.11 Synpcc7942_1029 ilvE branched-chain amino acid aminotransferase 0.74 Synpcc7942_0626 ilvD dihydroxy-acid dehydratase — —
Rhodanobacter sp. FW510-T8 0.11 OKGIIK_11840 ilvE branched-chain amino acid transaminase 0.27 OKGIIK_13600 ilvD dihydroxy-acid dehydratase low > 52
Lysobacter sp. OAE881 0.11 ABIE51_RS16505 branched-chain amino acid transaminase 0.27 ABIE51_RS17540 dihydroxy-acid dehydratase low > 62
Rhodospirillum rubrum S1H 0.09 Rru_A2223 Branched-chain amino acid aminotransferase I (NCBI) 0.71 Rru_A1786 Dihydroxy-acid dehydratase (NCBI) low > 58
Phaeobacter inhibens DSM 17395 0.08 PGA1_c34110 branched-chain-amino-acid aminotransferase IlvE 0.68 PGA1_c29490 dihydroxy-acid dehydratase LivD 0.79 19

Not shown: 0 genomes with orthologs for Sama_3299 only; 12 genomes with orthologs for Sama_3279 only