Conservation of cofitness between Dshi_0083 and Dshi_0085 in Dinoroseobacter shibae DFL-12

95 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Dinoroseobacter shibae DFL-12 1.0 Dshi_0083 3-isopropylmalate dehydratase, small subunit (RefSeq) 1.0 Dshi_0085 3-isopropylmalate dehydratase, large subunit (RefSeq) 0.76 4
Rhodospirillum rubrum S1H 0.80 Rru_A1190 3-isopropylmalate dehydratase small subunit region (NCBI) 0.67 Rru_A1189 3-isopropylmalate dehydratase large subunit region (NCBI) 0.77 9
Azospirillum sp. SherDot2 0.80 MPMX19_00606 3-isopropylmalate dehydratase small subunit 1 0.73 MPMX19_01998 3-isopropylmalate dehydratase large subunit 0.93 5
Magnetospirillum magneticum AMB-1 0.79 AMB_RS20565 3-isopropylmalate dehydratase small subunit 0.68 AMB_RS20560 3-isopropylmalate dehydratase large subunit
Sinorhizobium meliloti 1021 0.79 SMc03795 isopropylmalate isomerase small subunit 0.69 SMc03823 isopropylmalate isomerase large subunit 0.95 3
Rhizobium sp. OAE497 0.79 ABIE40_RS19040 3-isopropylmalate dehydratase small subunit 0.68 ABIE40_RS18380 3-isopropylmalate dehydratase large subunit 0.98 2
Phaeobacter inhibens DSM 17395 0.78 PGA1_c29790 3-isopropylmalate dehydratase small subunit 0.85 PGA1_c29780 3-isopropylmalate dehydratase large subunit 0.95 1
Azospirillum brasilense Sp245 0.77 AZOBR_RS14135 isopropylmalate isomerase 0.70 AZOBR_RS03545 isopropylmalate isomerase 0.92 1
Agrobacterium fabrum C58 0.77 Atu2790 3-isopropylmalate dehydratase, small subunit 0.67 Atu2709 3-isopropylmalate dehydratase, large subunit 0.96 1
Rhodopseudomonas palustris CGA009 0.75 TX73_001215 3-isopropylmalate dehydratase small subunit 0.67 TX73_001245 3-isopropylmalate dehydratase large subunit
Bosea sp. OAE506 0.74 ABIE41_RS11640 3-isopropylmalate dehydratase small subunit 0.70 ABIE41_RS11660 3-isopropylmalate dehydratase large subunit
Acinetobacter radioresistens SK82 0.61 MPMX26_00346 3-isopropylmalate dehydratase small subunit 1 0.63 MPMX26_00345 3-isopropylmalate dehydratase large subunit 1.00 1
Pseudomonas stutzeri RCH2 0.60 Psest_2590 3-isopropylmalate dehydratase, small subunit 0.64 Psest_2591 3-isopropylmalate dehydratase, large subunit 0.89 3
Marinobacter adhaerens HP15 0.60 HP15_1833 isopropylmalate isomerase small subunit 0.63 HP15_1834 protein containing 3-isopropylmalate dehydratase, large subunit region domain 0.95 1
Pseudomonas putida KT2440 0.59 PP_1986 3-isopropylmalate dehydratase small subunit 0.61 PP_1985 3-isopropylmalate dehydratase large subunit 0.86 2
Ralstonia solanacearum UW163 0.59 UW163_RS11110 3-isopropylmalate dehydratase small subunit 0.61 UW163_RS11105 3-isopropylmalate dehydratase large subunit
Ralstonia solanacearum IBSBF1503 0.59 RALBFv3_RS02615 3-isopropylmalate dehydratase small subunit 0.61 RALBFv3_RS02620 3-isopropylmalate dehydratase large subunit 0.65 2
Pseudomonas fluorescens GW456-L13 0.59 PfGW456L13_3947 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) 0.63 PfGW456L13_3948 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) 0.98 2
Pseudomonas sp. S08-1 0.59 OH686_04475 3-isopropylmalate dehydratase small subunit 0.64 OH686_04480 3-isopropylmalate dehydratase large subunit 0.84 7
Variovorax sp. OAS795 0.59 ABID97_RS08460 3-isopropylmalate dehydratase small subunit 0.61 ABID97_RS08465 3-isopropylmalate dehydratase large subunit
Pseudomonas simiae WCS417 0.59 PS417_18595 3-isopropylmalate dehydratase 0.62 PS417_18600 isopropylmalate isomerase 0.93 2
Pseudomonas fluorescens FW300-N1B4 0.59 Pf1N1B4_14 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) 0.63 Pf1N1B4_15 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)
Dechlorosoma suillum PS 0.59 Dsui_3199 3-isopropylmalate dehydratase, small subunit 0.59 Dsui_3201 3-isopropylmalate dehydratase, large subunit
Pseudomonas sp. RS175 0.59 PFR28_02823 3-isopropylmalate dehydratase small subunit 1 0.63 PFR28_02824 3-isopropylmalate dehydratase large subunit 0.72 2
Ralstonia solanacearum PSI07 0.58 RPSI07_RS14700 3-isopropylmalate dehydratase small subunit 0.61 RPSI07_RS14695 3-isopropylmalate dehydratase large subunit
Pseudomonas fluorescens FW300-N2E3 0.58 AO353_20625 3-isopropylmalate dehydratase 0.63 AO353_20620 isopropylmalate isomerase 0.97 4
Burkholderia phytofirmans PsJN 0.58 BPHYT_RS33905 3-isopropylmalate dehydratase small subunit 0.60 BPHYT_RS33915 isopropylmalate isomerase 0.75 3
Caulobacter crescentus NA1000 Δfur 0.58 CCNA_00195 3-isopropylmalate dehydratase small subunit 0.65 CCNA_00196 3-isopropylmalate dehydratase large subunit low > 67
Caulobacter crescentus NA1000 0.58 CCNA_00195 3-isopropylmalate dehydratase small subunit 0.65 CCNA_00196 3-isopropylmalate dehydratase large subunit 0.99 1
Pseudomonas fluorescens SBW25-INTG 0.58 PFLU_RS20575 3-isopropylmalate dehydratase small subunit 0.61 PFLU_RS20580 3-isopropylmalate dehydratase large subunit 0.93 1
Pseudomonas fluorescens SBW25 0.58 PFLU_RS20575 3-isopropylmalate dehydratase small subunit 0.61 PFLU_RS20580 3-isopropylmalate dehydratase large subunit 0.78 2
Pseudomonas syringae pv. syringae B728a ΔmexB 0.58 Psyr_1984 3-isopropylmalate dehydratase, small subunit 0.63 Psyr_1983 3-isopropylmalate dehydratase, large subunit 0.94 7
Pseudomonas syringae pv. syringae B728a 0.58 Psyr_1984 3-isopropylmalate dehydratase, small subunit 0.63 Psyr_1983 3-isopropylmalate dehydratase, large subunit 0.94 2
Hydrogenophaga sp. GW460-11-11-14-LB1 0.58 GFF3361 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) 0.61 GFF3363 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) 0.96 2
Ralstonia sp. UNC404CL21Col 0.58 ABZR87_RS14535 3-isopropylmalate dehydratase small subunit 0.62 ABZR87_RS14540 3-isopropylmalate dehydratase large subunit 0.89 5
Paraburkholderia bryophila 376MFSha3.1 0.58 H281DRAFT_06073 3-isopropylmalate dehydratase, small subunit 0.60 H281DRAFT_06075 3-isopropylmalate dehydratase, large subunit 0.83 2
Ralstonia solanacearum GMI1000 0.58 RS_RS09995 3-isopropylmalate dehydratase small subunit 0.61 RS_RS10000 3-isopropylmalate dehydratase large subunit
Kangiella aquimarina DSM 16071 0.58 B158DRAFT_1320 3-isopropylmalate dehydratase, small subunit 0.63 B158DRAFT_1319 3-isopropylmalate dehydratase, large subunit 0.90 1
Pseudomonas fluorescens FW300-N2E2 0.58 Pf6N2E2_64 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) 0.63 Pf6N2E2_63 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) 0.88 15
Variovorax sp. SCN45 0.58 GFF3889 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) 0.60 GFF3890 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) 0.79 5
Pseudomonas fluorescens FW300-N2C3 0.58 AO356_21405 3-isopropylmalate dehydratase 0.63 AO356_21400 isopropylmalate isomerase 0.95 5
Paraburkholderia sabiae LMG 24235 0.58 QEN71_RS17615 3-isopropylmalate dehydratase small subunit 0.61 QEN71_RS17605 3-isopropylmalate dehydratase large subunit 0.95 1
Acidovorax sp. GW101-3H11 0.57 Ac3H11_1527 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) 0.60 Ac3H11_1525 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) 0.97 2
Paraburkholderia graminis OAS925 0.57 ABIE53_004803 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit 0.61 ABIE53_004801 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit 0.96 3
Xanthomonas campestris pv. campestris strain 8004 0.56 Xcc-8004.1050.1 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) 0.63 Xcc-8004.1049.1 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) 0.91 4
Cupriavidus basilensis FW507-4G11 0.55 RR42_RS14390 3-isopropylmalate dehydratase 0.63 RR42_RS14400 isopropylmalate isomerase 0.95 1
Herbaspirillum seropedicae SmR1 0.55 HSERO_RS16505 3-isopropylmalate dehydratase small subunit 0.61 HSERO_RS16515 isopropylmalate isomerase 0.96 2
Castellaniella sp019104865 MT123 0.54 ABCV34_RS04285 3-isopropylmalate dehydratase small subunit 0.60 ABCV34_RS04290 3-isopropylmalate dehydratase large subunit low > 48
Serratia liquefaciens MT49 0.53 IAI46_03340 3-isopropylmalate dehydratase small subunit 0.62 IAI46_03345 3-isopropylmalate dehydratase large subunit 0.43 20
Dickeya dadantii 3937 0.53 DDA3937_RS18130 3-isopropylmalate dehydratase small subunit 0.63 DDA3937_RS18125 3-isopropylmalate dehydratase large subunit 0.95 1
Dickeya dianthicola ME23 0.53 DZA65_RS19215 3-isopropylmalate dehydratase small subunit 0.62 DZA65_RS19210 3-isopropylmalate dehydratase large subunit 0.95 2
Dickeya dianthicola 67-19 0.53 HGI48_RS18070 3-isopropylmalate dehydratase small subunit 0.62 HGI48_RS18065 3-isopropylmalate dehydratase large subunit 0.87 2
Pantoea sp. MT58 0.52 IAI47_16015 3-isopropylmalate dehydratase small subunit 0.61 IAI47_16010 3-isopropylmalate dehydratase large subunit 0.97 5
Vibrio cholerae E7946 ATCC 55056 0.52 CSW01_12610 3-isopropylmalate dehydratase small subunit 0.58 CSW01_12605 3-isopropylmalate dehydratase large subunit 0.68 31
Pectobacterium carotovorum WPP14 0.51 HER17_RS03070 3-isopropylmalate dehydratase small subunit 0.62 HER17_RS03075 3-isopropylmalate dehydratase large subunit 0.99 1
Shewanella loihica PV-4 0.51 Shew_3469 isopropylmalate isomerase small subunit (RefSeq) 0.59 Shew_3470 isopropylmalate isomerase large subunit (RefSeq) 0.98 12
Klebsiella michiganensis M5al 0.51 BWI76_RS04665 3-isopropylmalate dehydratase small subunit 0.63 BWI76_RS04670 3-isopropylmalate dehydratase large subunit 0.98 2
Shewanella oneidensis MR-1 0.51 SO4233 leuD 3-isopropylmalate dehydratase, small subunit (NCBI ptt file) 0.59 SO4234 leuC 3-isopropylmalate dehydratase, large subunit (NCBI ptt file) 0.98 5
Escherichia coli HS(pFamp)R (ATCC 700891) 0.50 OHPLBJKB_03586 3-isopropylmalate dehydratase small subunit 0.64 OHPLBJKB_03585 3-isopropylmalate dehydratase large subunit low > 73
Erwinia tracheiphila SCR3 0.50 LU632_RS02865 leuD 3-isopropylmalate dehydratase small subunit 0.57 LU632_RS02870 leuC 3-isopropylmalate dehydratase large subunit 0.93 2
Escherichia coli BW25113 0.50 b0071 leuD isopropylmalate isomerase small subunit (NCBI) 0.64 b0072 leuC isopropylmalate isomerase large subunit (NCBI) 0.99 1
Escherichia coli ECRC62 0.50 BNILDI_08535 leuD 3-isopropylmalate dehydratase small subunit 0.64 BNILDI_08540 leuC1 3-isopropylmalate dehydratase large subunit 1
Enterobacter asburiae PDN3 0.50 EX28DRAFT_3667 3-isopropylmalate dehydratase, small subunit 0.63 EX28DRAFT_3668 3-isopropylmalate dehydratase, large subunit 0.88 1
Escherichia coli ECOR27 0.50 NOLOHH_03075 leuD 3-isopropylmalate dehydratase small subunit 0.64 NOLOHH_03070 leuC1 3-isopropylmalate dehydratase large subunit 1 low > 57
Escherichia coli BL21 0.50 ECD_00073 3-isopropylmalate dehydratase small subunit 0.64 ECD_00074 3-isopropylmalate dehydratase large subunit 0.50 2
Shewanella sp. ANA-3 0.50 Shewana3_3758 leuD isopropylmalate isomerase small subunit (RefSeq) 0.58 Shewana3_3759 isopropylmalate isomerase large subunit (RefSeq) 0.99 1
Shewanella amazonensis SB2B 0.50 Sama_0338 leuD isopropylmalate isomerase small subunit (RefSeq) 0.58 Sama_0337 isopropylmalate isomerase large subunit (RefSeq) 0.99 1
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.50 GFF167 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) 0.62 GFF166 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) low > 78
Escherichia coli Nissle 1917 0.50 ECOLIN_RS00385 3-isopropylmalate dehydratase small subunit 0.64 ECOLIN_RS00390 3-isopropylmalate dehydratase large subunit low > 52
Escherichia coli ECRC101 0.50 MCAODC_01245 leuD 3-isopropylmalate dehydratase small subunit 0.63 MCAODC_01240 leuC1 3-isopropylmalate dehydratase large subunit 1
Escherichia fergusonii Becca 0.50 EFB2_03974 3-isopropylmalate dehydratase small subunit 0.64 EFB2_03973 3-isopropylmalate dehydratase large subunit low > 86
Escherichia coli ECOR38 0.50 HEPCGN_08710 leuD 3-isopropylmalate dehydratase small subunit 0.64 HEPCGN_08705 leuC1 3-isopropylmalate dehydratase large subunit 1 low > 85
Escherichia coli ECRC98 0.50 JDDGAC_14325 leuD 3-isopropylmalate dehydratase small subunit 0.63 JDDGAC_14320 leuC1 3-isopropylmalate dehydratase large subunit 1
Escherichia coli ECRC101 0.50 OKFHMN_10730 leuD 3-isopropylmalate dehydratase small subunit 0.63 OKFHMN_10725 leuC1 3-isopropylmalate dehydratase large subunit 1
Escherichia coli ECRC99 0.50 KEDOAH_17425 leuD 3-isopropylmalate dehydratase small subunit 0.63 KEDOAH_17430 leuC1 3-isopropylmalate dehydratase large subunit 1
Escherichia coli ECRC102 0.50 NIAGMN_08580 leuD 3-isopropylmalate dehydratase small subunit 0.63 NIAGMN_08575 leuC1 3-isopropylmalate dehydratase large subunit 1
Rahnella sp. WP5 0.50 EX31_RS03695 3-isopropylmalate dehydratase small subunit 0.61 EX31_RS03690 3-isopropylmalate dehydratase large subunit 0.97 3
Enterobacter sp. TBS_079 0.49 MPMX20_00766 3-isopropylmalate dehydratase small subunit 1 0.62 MPMX20_00767 3-isopropylmalate dehydratase large subunit 1 0.97 2
Sphingomonas koreensis DSMZ 15582 0.46 Ga0059261_4225 3-isopropylmalate dehydratase, small subunit 0.63 Ga0059261_4223 3-isopropylmalate dehydratase, large subunit 0.97 5
Alteromonas macleodii MIT1002 0.46 MIT1002_00946 3-isopropylmalate dehydratase small subunit 1 0.58 MIT1002_00947 3-isopropylmalate dehydratase large subunit 0.98 4
Pontibacter actiniarum KMM 6156, DSM 19842 0.45 CA264_09440 3-isopropylmalate dehydratase small subunit 0.51 CA264_09435 3-isopropylmalate dehydratase large subunit 0.50 2
Dyella japonica UNC79MFTsu3.2 0.43 ABZR86_RS15955 3-isopropylmalate dehydratase small subunit 0.48 ABZR86_RS15960 3-isopropylmalate dehydratase large subunit 0.96 7
Bacteroides stercoris CC31F 0.43 HMPREF1181_RS14140 3-isopropylmalate dehydratase small subunit 0.51 HMPREF1181_RS14145 3-isopropylmalate dehydratase large subunit 0.95 1
Rhodanobacter denitrificans MT42 0.43 LRK55_RS09970 3-isopropylmalate dehydratase small subunit 0.56 LRK55_RS07105 3-isopropylmalate dehydratase large subunit low > 63
Pedobacter sp. GW460-11-11-14-LB5 0.42 CA265_RS15840 3-isopropylmalate dehydratase small subunit 0.52 CA265_RS15830 3-isopropylmalate dehydratase large subunit 0.94 5
Rhodanobacter denitrificans FW104-10B01 0.42 LRK54_RS10330 3-isopropylmalate dehydratase small subunit 0.56 LRK54_RS07375 3-isopropylmalate dehydratase large subunit low > 59
Parabacteroides merdae CL09T00C40 0.42 HMPREF1078_RS16655 3-isopropylmalate dehydratase small subunit 0.49 HMPREF1078_RS16660 3-isopropylmalate dehydratase large subunit 0.91 1
Mucilaginibacter yixingensis YX-36 DSM 26809 0.42 ABZR88_RS11600 3-isopropylmalate dehydratase small subunit 0.53 ABZR88_RS11595 3-isopropylmalate dehydratase large subunit
Echinicola vietnamensis KMM 6221, DSM 17526 0.41 Echvi_2060 3-isopropylmalate dehydratase, small subunit 0.51 Echvi_2059 3-isopropylmalate dehydratase, large subunit
Bifidobacterium breve UCC2003 0.40 BBR_RS19625 3-isopropylmalate dehydratase small subunit 0.55 BBR_RS19630 3-isopropylmalate dehydratase large subunit 0.94 1
Brevundimonas sp. GW460-12-10-14-LB2 0.40 A4249_RS10000 3-isopropylmalate dehydratase small subunit 0.50 A4249_RS10005 3-isopropylmalate dehydratase large subunit 0.99 22
Phocaeicola vulgatus CL09T03C04 0.40 HMPREF1058_RS14555 3-isopropylmalate dehydratase small subunit 0.51 HMPREF1058_RS14550 3-isopropylmalate dehydratase large subunit 0.91 1
Phocaeicola dorei CL03T12C01 0.39 ABI39_RS10205 3-isopropylmalate dehydratase small subunit 0.52 ABI39_RS10200 3-isopropylmalate dehydratase large subunit 0.91 1
Bacteroides ovatus ATCC 8483 0.39 BACOVA_04602 3-isopropylmalate dehydratase, small subunit 0.51 BACOVA_04603 3-isopropylmalate dehydratase, large subunit 0.97 1
Bacteroides thetaiotaomicron VPI-5482 0.39 BT1859 3-isopropylmalate dehydratase small subunit (NCBI ptt file) 0.50 BT1860 3-isopropylmalate dehydratase large subunit (NCBI ptt file) 0.89 4
Mycobacterium tuberculosis H37Rv 0.34 Rv2987c Probable 3-isopropylmalate dehydratase (small subunit) LeuD (isopropylmalate isomerase) (alpha-IPM isomerase) (IPMI) 0.58 Rv2988c Probable 3-isopropylmalate dehydratase (large subunit) LeuC (isopropylmalate isomerase) (alpha-IPM isomerase) (IPMI)

Not shown: 2 genomes with orthologs for Dshi_0083 only; 1 genomes with orthologs for Dshi_0085 only