| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Bacteroides thetaiotaomicron VPI-5482 | 1.0 | BT2830 | | DNA-binding protein HU-beta (NCBI ptt file) | 1.0 | BT4372 | | conserved hypothetical protein (NCBI ptt file) | 0.31 | 11 |
| Bacteroides ovatus ATCC 8483 | 0.97 | BACOVA_02078 | | DNA-binding protein HU | 0.93 | BACOVA_05204 | | 23S rRNA m2A2503 methyltransferase | low | > 94 |
| Phocaeicola dorei CL03T12C01 | 0.78 | ABI39_RS06620 | | HU family DNA-binding protein | 0.78 | ABI39_RS12945 | | 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN | low | > 72 |
| Phocaeicola vulgatus CL09T03C04 | 0.78 | HMPREF1058_RS10500 | | HU family DNA-binding protein | 0.78 | HMPREF1058_RS17025 | | 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN | low | > 67 |
| Bacteroides stercoris CC31F | 0.77 | HMPREF1181_RS01105 | | HU family DNA-binding protein | 0.85 | HMPREF1181_RS05775 | | 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN | low | > 56 |
| Pantoea sp. MT58 | 0.63 | IAI47_14640 | | DNA-binding protein HU-beta | 0.33 | IAI47_05040 | | bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN | low | > 76 |
| Dickeya dianthicola ME23 | 0.62 | DZA65_RS06025 | | DNA-binding protein HU-beta | 0.32 | DZA65_RS16665 | | bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN | low | > 75 |
| Dickeya dadantii 3937 | 0.62 | DDA3937_RS05655 | | DNA-binding protein HU-beta | 0.32 | DDA3937_RS15480 | | bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN | low | > 74 |
| Erwinia tracheiphila SCR3 | 0.62 | LU632_RS18330 | hupB | DNA-binding protein HU-beta | 0.33 | LU632_RS17815 | | bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN | low | > 74 |
| Pectobacterium carotovorum WPP14 | 0.62 | HER17_RS15835 | | DNA-binding protein HU-beta | 0.33 | HER17_RS06085 | | bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN | low | > 75 |
| Marinobacter adhaerens HP15 | 0.62 | HP15_2182 | | histone-like bacterial DNA-binding protein | 0.37 | HP15_1490 | | conserved hypothetical protein | — | — |
| Dickeya dianthicola 67-19 | 0.62 | HGI48_RS05700 | | DNA-binding protein HU-beta | 0.32 | HGI48_RS15590 | | bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN | low | > 71 |
| Parabacteroides merdae CL09T00C40 | 0.62 | HMPREF1078_RS11630 | | HU family DNA-binding protein | 0.66 | HMPREF1078_RS14530 | | 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN | low | > 61 |
| Pseudomonas stutzeri RCH2 | 0.60 | Psest_2284 | | Bacterial nucleoid DNA-binding protein | 0.34 | Psest_1259 | | 23S rRNA m2A2503 methyltransferase | — | — |
| Enterobacter sp. TBS_079 | 0.60 | MPMX20_01031 | | DNA-binding protein HU-beta | 0.34 | MPMX20_03395 | | Dual-specificity RNA methyltransferase RlmN | low | > 85 |
| Pseudomonas putida KT2440 | 0.60 | PP_2303 | | DNA binding regulator, beta subunit B | 0.33 | PP_0850 | | Dual-specificity RNA methyltransferase RlmN | — | — |
| Enterobacter asburiae PDN3 | 0.60 | EX28DRAFT_2530 | | Bacterial nucleoid DNA-binding protein | 0.34 | EX28DRAFT_0126 | | 23S rRNA (adenine(2503)-C(2))-methyltransferase | low | > 76 |
| Klebsiella michiganensis M5al | 0.60 | BWI76_RS06540 | | DNA-binding protein HU-beta | 0.34 | BWI76_RS21095 | | bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN | low | > 92 |
| Escherichia fergusonii Becca | 0.59 | EFB2_03617 | | DNA-binding protein HU-beta | 0.35 | EFB2_01373 | | Dual-specificity RNA methyltransferase RlmN | low | > 86 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.59 | OHPLBJKB_03233 | | DNA-binding protein HU-beta | 0.34 | OHPLBJKB_01192 | | Dual-specificity RNA methyltransferase RlmN | low | > 73 |
| Escherichia coli BW25113 | 0.59 | b0440 | hupB | HU, DNA-binding transcriptional regulator, beta subunit (NCBI) | 0.35 | b2517 | yfgB | predicted enzyme (NCBI) | low | > 76 |
| Acinetobacter radioresistens SK82 | 0.59 | MPMX26_01331 | | DNA-binding protein HU-beta | 0.33 | MPMX26_00426 | | Dual-specificity RNA methyltransferase RlmN | — | — |
| Pseudomonas sp. S08-1 | 0.59 | OH686_03630 | | DNA-binding protein HU-beta | 0.33 | OH686_17515 | | 23S rRNA (adenine(2503)-C(2))-methyltransferase | — | — |
| Escherichia coli BL21 | 0.59 | ECD_00392 | | HU, DNA-binding transcriptional regulator, beta subunit | 0.35 | ECD_02409 | | dual specificity 23S rRNA m(2)A2503, tRNA m(2)A37 methyltransferase, SAM-dependent | 0.91 | 1 |
| Escherichia coli ECRC62 | 0.58 | BNILDI_22665 | hupB | DNA-binding protein HU-beta | 0.35 | BNILDI_12160 | rlmN | bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN | — | — |
| Escherichia coli ECRC102 | 0.58 | NIAGMN_06370 | hupB | DNA-binding protein HU-beta | 0.34 | NIAGMN_19480 | rlmN | bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN | — | — |
| Pseudomonas fluorescens SBW25-INTG | 0.58 | PFLU_RS19155 | | HU family DNA-binding protein | 0.34 | PFLU_RS24815 | | 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN | — | — |
| Pseudomonas fluorescens SBW25 | 0.58 | PFLU_RS19155 | | HU family DNA-binding protein | 0.34 | PFLU_RS24815 | | 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN | — | — |
| Escherichia coli ECOR38 | 0.58 | HEPCGN_06930 | hupB | DNA-binding protein HU-beta | 0.35 | HEPCGN_20830 | rlmN | bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN | low | > 85 |
| Escherichia coli ECRC101 | 0.58 | OKFHMN_08315 | hupB | DNA-binding protein HU-beta | 0.34 | OKFHMN_21710 | rlmN | bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN | — | — |
| Pseudomonas simiae WCS417 | 0.58 | PS417_17220 | | transcriptional regulator HU subunit alpha | 0.34 | PS417_23160 | | 50S rRNA methyltransferase | — | — |
| Escherichia coli ECRC99 | 0.58 | KEDOAH_19650 | hupB | DNA-binding protein HU-beta | 0.34 | KEDOAH_06510 | rlmN | bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN | — | — |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.58 | GFF4356 | | DNA-binding protein HU-beta | 0.35 | GFF2414 | | Ribosomal RNA large subunit methyltransferase N (EC 2.1.1.-) | low | > 78 |
| Escherichia coli Nissle 1917 | 0.58 | ECOLIN_RS02640 | | nucleoid-associated protein HU-beta | 0.35 | ECOLIN_RS14300 | | bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN | low | > 52 |
| Escherichia coli ECRC101 | 0.58 | MCAODC_27540 | hupB | DNA-binding protein HU-beta | 0.34 | MCAODC_12240 | rlmN | bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN | — | — |
| Escherichia coli ECRC98 | 0.58 | JDDGAC_11970 | hupB | DNA-binding protein HU-beta | 0.34 | JDDGAC_25385 | rlmN | bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN | — | — |
| Escherichia coli ECOR27 | 0.58 | NOLOHH_01250 | hupB | DNA-binding protein HU-beta | 0.35 | NOLOHH_13360 | rlmN | bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN | low | > 57 |
| Rahnella sp. WP5 | 0.58 | EX31_RS22260 | | DNA-binding protein HU-beta | 0.32 | EX31_RS20525 | | bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN | low | > 89 |
| Alteromonas macleodii MIT1002 | 0.58 | MIT1002_02756 | | hypothetical protein | 0.33 | MIT1002_02791 | | Dual-specificity RNA methyltransferase RlmN | — | — |
| Shewanella oneidensis MR-1 | 0.58 | SO1797 | | DNA-binding protein, HU family (NCBI ptt file) | 0.33 | SO3315 | | conserved hypothetical protein TIGR00048 (NCBI ptt file) | — | — |
| Shewanella sp. ANA-3 | 0.58 | Shewana3_2658 | | histone family protein DNA-binding protein (RefSeq) | 0.34 | Shewana3_1226 | | hypothetical protein (RefSeq) | — | — |
| Magnetospirillum magneticum AMB-1 | 0.57 | AMB_RS10490 | | HU family DNA-binding protein | 0.33 | AMB_RS05715 | | 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN | — | — |
| Dyella japonica UNC79MFTsu3.2 | 0.57 | ABZR86_RS07315 | | HU family DNA-binding protein | 0.33 | ABZR86_RS05455 | | 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN | — | — |
| Shewanella amazonensis SB2B | 0.57 | Sama_1227 | | HU family DNA-binding protein (RefSeq) | 0.33 | Sama_2368 | | hypothetical protein (RefSeq) | — | — |
| Shewanella loihica PV-4 | 0.57 | Shew_2505 | | histone family protein DNA-binding protein (RefSeq) | 0.33 | Shew_1287 | | hypothetical protein (RefSeq) | — | — |
| Kangiella aquimarina DSM 16071 | 0.56 | B158DRAFT_1039 | | Bacterial nucleoid DNA-binding protein | 0.34 | B158DRAFT_1149 | | 23S rRNA m2A2503 methyltransferase | low | > 40 |
| Serratia liquefaciens MT49 | 0.56 | IAI46_05025 | | DNA-binding protein HU-beta | 0.33 | IAI46_19290 | | bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN | low | > 86 |
| Rhodanobacter denitrificans FW104-10B01 | 0.56 | LRK54_RS16740 | | HU family DNA-binding protein | 0.33 | LRK54_RS00070 | | 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN | low | > 59 |
| Rhodanobacter denitrificans MT42 | 0.56 | LRK55_RS16465 | | HU family DNA-binding protein | 0.33 | LRK55_RS18065 | | 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN | — | — |
| Rhodanobacter sp. FW510-T8 | 0.56 | OKGIIK_08025 | himA | integration host factor subunit alpha | 0.33 | OKGIIK_07140 | rlmN | 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN | — | — |
| Pseudomonas syringae pv. syringae B728a | 0.56 | Psyr_1750 | | bacterial nucleoid protein HU beta subunit | 0.34 | Psyr_1245 | | 23S rRNA m(2)A-2503 methyltransferase | — | — |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.56 | Psyr_1750 | | bacterial nucleoid protein HU beta subunit | 0.34 | Psyr_1245 | | 23S rRNA m(2)A-2503 methyltransferase | — | — |
| Vibrio cholerae E7946 ATCC 55056 | 0.56 | CSW01_09600 | | DNA-binding protein HU-beta | 0.34 | CSW01_03930 | | bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN | low | > 62 |
| Pseudomonas fluorescens FW300-N2C3 | 0.55 | AO356_01735 | | DNA-binding protein HU | 0.34 | AO356_06605 | | 23S rRNA (adenine(2503)-C2)-methyltransferase | — | — |
| Pseudomonas fluorescens FW300-N2E3 | 0.55 | AO353_20190 | | DNA-binding protein HU | 0.34 | AO353_15875 | | 23S rRNA (adenine(2503)-C2)-methyltransferase | — | — |
| Pseudomonas fluorescens GW456-L13 | 0.55 | PfGW456L13_2555 | | DNA-binding protein HU-beta | 0.35 | PfGW456L13_4865 | | Ribosomal RNA large subunit methyltransferase N (EC 2.1.1.-) | — | — |
| Pseudomonas fluorescens FW300-N2E2 | 0.55 | Pf6N2E2_2215 | | DNA-binding protein HU-beta | 0.34 | Pf6N2E2_3181 | | Ribosomal RNA large subunit methyltransferase N (EC 2.1.1.-) | — | — |
| Pseudomonas fluorescens FW300-N1B4 | 0.55 | Pf1N1B4_3948 | | DNA-binding protein HU-beta | 0.34 | Pf1N1B4_857 | | Ribosomal RNA large subunit methyltransferase N (EC 2.1.1.-) | — | — |
| Variovorax sp. SCN45 | 0.55 | GFF6506 | | DNA-binding protein HU-beta | 0.33 | GFF992 | | 23S rRNA (adenine(2503)-C(2))-methyltransferase @ tRNA (adenine(37)-C(2))-methyltransferase (EC 2.1.1.192) | low | > 127 |
| Herbaspirillum seropedicae SmR1 | 0.55 | HSERO_RS12900 | | transcriptional regulator HU subunit alpha | 0.33 | HSERO_RS14810 | | 50S rRNA methyltransferase | — | — |
| Paraburkholderia bryophila 376MFSha3.1 | 0.54 | H281DRAFT_06148 | | DNA-binding protein HU-beta | 0.32 | H281DRAFT_00514 | | 23S rRNA m(2)A-2503 methyltransferase | — | — |
| Paraburkholderia sabiae LMG 24235 | 0.53 | QEN71_RS21970 | | HU family DNA-binding protein | 0.33 | QEN71_RS05965 | | 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN | low | > 153 |
| Burkholderia phytofirmans PsJN | 0.53 | BPHYT_RS09465 | | transcriptional regulator | 0.33 | BPHYT_RS12590 | | dual-specificity RNA methyltransferase RlmN | low | > 109 |
| Dechlorosoma suillum PS | 0.53 | Dsui_2199 | | bacterial nucleoid DNA-binding protein | 0.35 | Dsui_3145 | | 23S rRNA m2A2503 methyltransferase | — | — |
| Paraburkholderia graminis OAS925 | 0.52 | ABIE53_002118 | | DNA-binding protein HU-beta | 0.32 | ABIE53_002744 | | 23S rRNA (adenine2503-C2)-methyltransferase | low | > 113 |
| Castellaniella sp019104865 MT123 | 0.52 | ABCV34_RS06640 | | HU family DNA-binding protein | 0.34 | ABCV34_RS02610 | | 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN | — | — |
| Lysobacter sp. OAE881 | 0.52 | ABIE51_RS14140 | | HU family DNA-binding protein | 0.34 | ABIE51_RS09415 | | 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN | — | — |
| Variovorax sp. OAS795 | 0.52 | ABID97_RS23580 | | HU family DNA-binding protein | 0.33 | ABID97_RS14210 | | 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN | — | — |
| Ralstonia sp. UNC404CL21Col | 0.52 | ABZR87_RS12780 | | HU family DNA-binding protein | 0.34 | ABZR87_RS10900 | | 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN | low | > 80 |
| Sinorhizobium meliloti 1021 | 0.52 | SMc01906 | | histone-like protein | 0.34 | SMc03831 | | hypothetical protein | — | — |
| Sphingomonas koreensis DSMZ 15582 | 0.51 | Ga0059261_0103 | | Bacterial nucleoid DNA-binding protein | 0.31 | Ga0059261_1407 | | 23S rRNA (adenine(2503)-C(2))-methyltransferase | — | — |
| Azospirillum sp. SherDot2 | 0.51 | MPMX19_01544 | | DNA-binding protein HU | 0.35 | MPMX19_02413 | | Dual-specificity RNA methyltransferase RlmN | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.51 | RALBFv3_RS01335 | | HU family DNA-binding protein | 0.33 | RALBFv3_RS15260 | | 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN | — | — |
| Ralstonia solanacearum UW163 | 0.51 | UW163_RS14645 | | HU family DNA-binding protein | 0.33 | UW163_RS12725 | | 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN | — | — |
| Ralstonia solanacearum PSI07 | 0.51 | RPSI07_RS16140 | | HU family DNA-binding protein | 0.33 | RPSI07_RS18115 | | 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN | — | — |
| Ralstonia solanacearum GMI1000 | 0.51 | RS_RS08660 | | HU family DNA-binding protein | 0.33 | RS_RS06070 | | 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN | — | — |
| Desulfovibrio vulgaris Miyazaki F | 0.49 | DvMF_0500 | | histone family protein DNA-binding protein (RefSeq) | 0.33 | DvMF_1431 | | radical SAM enzyme, Cfr family (RefSeq) | low | > 51 |
| Acidovorax sp. GW101-3H11 | 0.49 | Ac3H11_376 | | DNA-binding protein HU-beta | 0.34 | Ac3H11_1791 | | Ribosomal RNA large subunit methyltransferase N (EC 2.1.1.-) | 0.28 | 10 |
| Azospirillum brasilense Sp245 | 0.48 | AZOBR_RS07150 | | transcriptional regulator | 0.36 | AZOBR_RS00800 | | 50S rRNA methyltransferase | — | — |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.47 | GFF3853 | | DNA-binding protein HU-beta | 0.33 | GFF4866 | | Ribosomal RNA large subunit methyltransferase N (EC 2.1.1.-) | low | > 90 |
| Desulfovibrio vulgaris Hildenborough JW710 | 0.47 | DVU1795 | hup-3 | DNA-binding protein HU (TIGR) | 0.32 | DVU2904 | | radical SAM enzyme, Cfr family (TIGR) | — | — |
| Caulobacter crescentus NA1000 | 0.45 | CCNA_02036 | | DNA-binding protein HU | 0.31 | CCNA_00133 | | radical SAM family enzyme | low | > 66 |
| Caulobacter crescentus NA1000 Δfur | 0.45 | CCNA_02036 | | DNA-binding protein HU | 0.31 | CCNA_00133 | | radical SAM family enzyme | low | > 67 |
| Cupriavidus basilensis FW507-4G11 | 0.45 | RR42_RS28955 | | transcriptional regulator | 0.33 | RR42_RS13155 | | 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN | — | — |
| Synechococcus elongatus PCC 7942 | 0.44 | Synpcc7942_2248 | himA | bacterial nucleoid protein Hbs | 0.32 | Synpcc7942_1758 | | hypothetical protein | — | — |
| Agrobacterium fabrum C58 | 0.43 | Atu1262 | | histone-like protein | 0.33 | Atu2673 | | hypothetical protein | — | — |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.42 | A4249_RS06455 | | HU family DNA-binding protein | 0.33 | A4249_RS12865 | | 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN | low | > 48 |
| Bosea sp. OAE506 | 0.41 | ABIE41_RS21840 | | HU family DNA-binding protein | 0.30 | ABIE41_RS04880 | | 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN | — | — |
| Rhizobium sp. OAE497 | 0.41 | ABIE40_RS07105 | | DNA-binding protein HupB | 0.33 | ABIE40_RS18200 | | 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN | low | > 107 |
| Pseudomonas sp. RS175 | 0.41 | PFR28_04473 | | DNA-binding protein HU-beta | 0.34 | PFR28_00294 | | Dual-specificity RNA methyltransferase RlmN | low | > 88 |
| Phaeobacter inhibens DSM 17395 | 0.40 | PGA1_c04840 | | integration host factor subunit beta | 0.33 | PGA1_c36240 | | ribosomal RNA large subunit methyltransferase N | — | — |
| Dinoroseobacter shibae DFL-12 | 0.40 | Dshi_1027 | | integration host factor, beta subunit (RefSeq) | 0.35 | Dshi_3311 | | radical SAM enzyme, Cfr family (RefSeq) | — | — |
| Rhodopseudomonas palustris CGA009 | 0.39 | TX73_000345 | | integration host factor subunit beta | 0.33 | TX73_002060 | | 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN | low | > 86 |
| Bifidobacterium breve UCC2003 | 0.37 | BBR_RS17545 | | integration host factor | 0.24 | BBR_RS16105 | | 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN | — | — |
| Fusobacterium nucleatum SB010 | 0.33 | HUW76_04995 | | HU family DNA-binding protein | 0.30 | HUW76_07445 | | 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN | — | — |
Not shown: 1 genomes with orthologs for BT2830 only; 5 genomes with orthologs for BT4372 only